ISHsal14
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP038631 | ND | Halobacterium salinarum | Halobacterium salinarum DSM 3754 Halobacterium salinarum 91-R6 |
DNA section
IS Length : 1502 bp
Ends
Left end : CAGTTTCGAGGCGGAGCCCCCGGCCTCAAGGAGCGAGGGCTTCCGGCTGGTCGGAAGCGCGAAGCAAGTAGACCGGGGAGGAAGCCGACACTCACGACAC II struct. : Yes
Right end : GGCCAACCGCCGACAGCTGATTCCCGGGAGTCCACATCAAAGTCCCACCCTCAACGAACTGAGGCGCGTAGCGCCGAGGGAGTAGGGTGGGGTAGTTTAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GCCCGCCCCACC | TCAG | AACTGGAGGTGG | TTAC |
DNA sequence
CAGTTTCGAGGCGGAGCCCCCGGCCTCAAGGAGCGAGGGCTTCCGGCTGGTCGGAAGCGCGAAGCAAGTAGACCGGGGAGGAAGCCGACACTCACGACAC
AATCCACAAGCCAATAGCTTCCCGACTCCCGGATCATTAAGTACCGATAGGCAAATATCTGAACTATGGAGGTCAGGCGCACCGCGCCGGTCAAACTCGT
TGTCCCCGACGAGTACCACGACGACCTCCACGAAACCGCCGAGCAATTCATCTACTGCGCGAACGAAGCCAGTGACTACTGCTGGGACAACACCAGCTAC
GAGAATTGCATCACCTCGAACGTGACCGCGAGAAACGCGTTGTACGACCGGCTCCGCGAGGAAACGGACCTCACGGCAAACCTCGTCCAAGAAGCCATTC
GACGTGCCGTTCACGCCGTCGATAGTGGTGTTGATCGCTGGAAAAACGGCAAGCGGACGAACAAACCAGAGTTCACCTCGTGGAGTATGGTCTACGACAA
GCGGAGTGCGACGTTCTACCGGAACAAAATCTCACTGTCCACGGTGGACGGACGCATCGAGTGTGATTTCGAGTTGCCAGCGGATAGTCCAACGCCGTAC
GAAGAGTACGTCTTGTCCGAGGAGTACGAGTTTCGAACGAGTACACTCCAGTACGACCAAGCGACTGACGAGTTCTACTTCCACGTCAAAACGCGAAAGA
TGGACACAGACGGTGAGGCTGTTGAGATTGAGGGTTCGGACGATACCGGGCACCAGACAGTCCTCGGGATCGACCTCGGTGTGAACAGTCTCGCCGTCGC
CAGCACAGCCACGTTCTGGAGTGGTGACGGGTACGATCACTGGATCCGGGAGTTTGAGAAACGTCGGGCGGAGATGCAACAGCGTGGCACACAAGCCGCT
CACAACGCCTGGCTTCGGCTTGGAAAGCGAGAGCGAGCATGGCGGAAACAGTACATCCACATGGTCGCCAACGAGATTGTTGACGAAGCGGTTGACCACG
ATTGCGACGTGATAGTGTTTGAGGAGTTGACGGATATTCGAGAGCGACTCCCTCAAGCTGACTGGCATCACGTGTGGGCATTCCACCGCCTTGTCGAGTA
CGTTGCGTACAAAGCTCCAGAACGGGGTGTGGCGGTTGAACAAGTCGAGCCTGCCCACACGAGCCAACGGTGTTCTCGAACTGATTGTGGGTTCACCCAC
GAAGATAACCGCGACAGCGAACAGTTCCAGTGTCTGAAGTGCGGGTACGAAATCAACGCTGATTACAACGGCGCGAAAAACATCGCGCTCCGATATATGC
GGAAGCGACAGCACCGCCTGCGTTCCTCGCCCACGTCGAGGGGCGCAGACGCACCAGTAGACGTGCGTGTACATGGTGGGACGTTGAACGATGACGGCTA
TCGGCCAACCGCCGACAGCTGATTCCCGGGAGTCCACATCAAAGTCCCACCCTCAACGAACTGAGGCGCGTAGCGCCGAGGGAGTAGGGTGGGGTAGTTT
AC
AATCCACAAGCCAATAGCTTCCCGACTCCCGGATCATTAAGTACCGATAGGCAAATATCTGAACTATGGAGGTCAGGCGCACCGCGCCGGTCAAACTCGT
TGTCCCCGACGAGTACCACGACGACCTCCACGAAACCGCCGAGCAATTCATCTACTGCGCGAACGAAGCCAGTGACTACTGCTGGGACAACACCAGCTAC
GAGAATTGCATCACCTCGAACGTGACCGCGAGAAACGCGTTGTACGACCGGCTCCGCGAGGAAACGGACCTCACGGCAAACCTCGTCCAAGAAGCCATTC
GACGTGCCGTTCACGCCGTCGATAGTGGTGTTGATCGCTGGAAAAACGGCAAGCGGACGAACAAACCAGAGTTCACCTCGTGGAGTATGGTCTACGACAA
GCGGAGTGCGACGTTCTACCGGAACAAAATCTCACTGTCCACGGTGGACGGACGCATCGAGTGTGATTTCGAGTTGCCAGCGGATAGTCCAACGCCGTAC
GAAGAGTACGTCTTGTCCGAGGAGTACGAGTTTCGAACGAGTACACTCCAGTACGACCAAGCGACTGACGAGTTCTACTTCCACGTCAAAACGCGAAAGA
TGGACACAGACGGTGAGGCTGTTGAGATTGAGGGTTCGGACGATACCGGGCACCAGACAGTCCTCGGGATCGACCTCGGTGTGAACAGTCTCGCCGTCGC
CAGCACAGCCACGTTCTGGAGTGGTGACGGGTACGATCACTGGATCCGGGAGTTTGAGAAACGTCGGGCGGAGATGCAACAGCGTGGCACACAAGCCGCT
CACAACGCCTGGCTTCGGCTTGGAAAGCGAGAGCGAGCATGGCGGAAACAGTACATCCACATGGTCGCCAACGAGATTGTTGACGAAGCGGTTGACCACG
ATTGCGACGTGATAGTGTTTGAGGAGTTGACGGATATTCGAGAGCGACTCCCTCAAGCTGACTGGCATCACGTGTGGGCATTCCACCGCCTTGTCGAGTA
CGTTGCGTACAAAGCTCCAGAACGGGGTGTGGCGGTTGAACAAGTCGAGCCTGCCCACACGAGCCAACGGTGTTCTCGAACTGATTGTGGGTTCACCCAC
GAAGATAACCGCGACAGCGAACAGTTCCAGTGTCTGAAGTGCGGGTACGAAATCAACGCTGATTACAACGGCGCGAAAAACATCGCGCTCCGATATATGC
GGAAGCGACAGCACCGCCTGCGTTCCTCGCCCACGTCGAGGGGCGCAGACGCACCAGTAGACGTGCGTGTACATGGTGGGACGTTGAACGATGACGGCTA
TCGGCCAACCGCCGACAGCTGATTCCCGGGAGTCCACATCAAAGTCCCACCCTCAACGAACTGAGGCGCGTAGCGCCGAGGGAGTAGGGTGGGGTAGTTT
AC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1257 bp | 418 aa | 166 | 1422 | + | No |
AG : TnpB
ORF sequence :
MEVRRTAPVKLVVPDEYHDDLHETAEQFIYCANEASDYCWDNTSYENCITSNVTARNALYDRLREETDLTANLVQEAIRRAVHAVDSGVDRWKNGKRTNK
PEFTSWSMVYDKRSATFYRNKISLSTVDGRIECDFELPADSPTPYEEYVLSEEYEFRTSTLQYDQATDEFYFHVKTRKMDTDGEAVEIEGSDDTGHQTVL
GIDLGVNSLAVASTATFWSGDGYDHWIREFEKRRAEMQQRGTQAAHNAWLRLGKRERAWRKQYIHMVANEIVDEAVDHDCDVIVFEELTDIRERLPQADW
HHVWAFHRLVEYVAYKAPERGVAVEQVEPAHTSQRCSRTDCGFTHEDNRDSEQFQCLKCGYEINADYNGAKNIALRYMRKRQHRLRSSPTSRGADAPVDV
RVHGGTLNDDGYRPTADS
PEFTSWSMVYDKRSATFYRNKISLSTVDGRIECDFELPADSPTPYEEYVLSEEYEFRTSTLQYDQATDEFYFHVKTRKMDTDGEAVEIEGSDDTGHQTVL
GIDLGVNSLAVASTATFWSGDGYDHWIREFEKRRAEMQQRGTQAAHNAWLRLGKRERAWRKQYIHMVANEIVDEAVDHDCDVIVFEELTDIRERLPQADW
HHVWAFHRLVEYVAYKAPERGVAVEQVEPAHTSQRCSRTDCGFTHEDNRDSEQFQCLKCGYEINADYNGAKNIALRYMRKRQHRLRSSPTSRGADAPVDV
RVHGGTLNDDGYRPTADS
Blast result :
Comments
ISHsal14 is 82% (TnpB) aa similar to ISNaoc8.
References
1] Pfeiffer F., Marchfelder A., Habermann BH., Dyall-Smith M. (2018) Direct submission.
2] Pfeiffer F, Marchfelder A, Habermann B, Dyall-Smith ML. (2019) Microbiol Resour Announc. 11;8(28).
2] Pfeiffer F, Marchfelder A, Habermann B, Dyall-Smith ML. (2019) Microbiol Resour Announc. 11;8(28).