ISHsal14

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP038631 ND Halobacterium salinarum
Halobacterium salinarum DSM 3754
Halobacterium salinarum 91-R6
DNA section
IS Length : 1502 bp

Ends


Left end : CAGTTTCGAGGCGGAGCCCCCGGCCTCAAGGAGCGAGGGCTTCCGGCTGGTCGGAAGCGCGAAGCAAGTAGACCGGGGAGGAAGCCGACACTCACGACAC II struct. : Yes
Right end : GGCCAACCGCCGACAGCTGATTCCCGGGAGTCCACATCAAAGTCCCACCCTCAACGAACTGAGGCGCGTAGCGCCGAGGGAGTAGGGTGGGGTAGTTTAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
GCCCGCCCCACCTCAGAACTGGAGGTGGTTAC

DNA sequence

CAGTTTCGAGGCGGAGCCCCCGGCCTCAAGGAGCGAGGGCTTCCGGCTGGTCGGAAGCGCGAAGCAAGTAGACCGGGGAGGAAGCCGACACTCACGACAC
AATCCACAAGCCAATAGCTTCCCGACTCCCGGATCATTAAGTACCGATAGGCAAATATCTGAACTATGGAGGTCAGGCGCACCGCGCCGGTCAAACTCGT
TGTCCCCGACGAGTACCACGACGACCTCCACGAAACCGCCGAGCAATTCATCTACTGCGCGAACGAAGCCAGTGACTACTGCTGGGACAACACCAGCTAC
GAGAATTGCATCACCTCGAACGTGACCGCGAGAAACGCGTTGTACGACCGGCTCCGCGAGGAAACGGACCTCACGGCAAACCTCGTCCAAGAAGCCATTC
GACGTGCCGTTCACGCCGTCGATAGTGGTGTTGATCGCTGGAAAAACGGCAAGCGGACGAACAAACCAGAGTTCACCTCGTGGAGTATGGTCTACGACAA
GCGGAGTGCGACGTTCTACCGGAACAAAATCTCACTGTCCACGGTGGACGGACGCATCGAGTGTGATTTCGAGTTGCCAGCGGATAGTCCAACGCCGTAC
GAAGAGTACGTCTTGTCCGAGGAGTACGAGTTTCGAACGAGTACACTCCAGTACGACCAAGCGACTGACGAGTTCTACTTCCACGTCAAAACGCGAAAGA
TGGACACAGACGGTGAGGCTGTTGAGATTGAGGGTTCGGACGATACCGGGCACCAGACAGTCCTCGGGATCGACCTCGGTGTGAACAGTCTCGCCGTCGC
CAGCACAGCCACGTTCTGGAGTGGTGACGGGTACGATCACTGGATCCGGGAGTTTGAGAAACGTCGGGCGGAGATGCAACAGCGTGGCACACAAGCCGCT
CACAACGCCTGGCTTCGGCTTGGAAAGCGAGAGCGAGCATGGCGGAAACAGTACATCCACATGGTCGCCAACGAGATTGTTGACGAAGCGGTTGACCACG
ATTGCGACGTGATAGTGTTTGAGGAGTTGACGGATATTCGAGAGCGACTCCCTCAAGCTGACTGGCATCACGTGTGGGCATTCCACCGCCTTGTCGAGTA
CGTTGCGTACAAAGCTCCAGAACGGGGTGTGGCGGTTGAACAAGTCGAGCCTGCCCACACGAGCCAACGGTGTTCTCGAACTGATTGTGGGTTCACCCAC
GAAGATAACCGCGACAGCGAACAGTTCCAGTGTCTGAAGTGCGGGTACGAAATCAACGCTGATTACAACGGCGCGAAAAACATCGCGCTCCGATATATGC
GGAAGCGACAGCACCGCCTGCGTTCCTCGCCCACGTCGAGGGGCGCAGACGCACCAGTAGACGTGCGTGTACATGGTGGGACGTTGAACGATGACGGCTA
TCGGCCAACCGCCGACAGCTGATTCCCGGGAGTCCACATCAAAGTCCCACCCTCAACGAACTGAGGCGCGTAGCGCCGAGGGAGTAGGGTGGGGTAGTTT
AC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1257 bp418 aa1661422+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MEVRRTAPVKLVVPDEYHDDLHETAEQFIYCANEASDYCWDNTSYENCITSNVTARNALYDRLREETDLTANLVQEAIRRAVHAVDSGVDRWKNGKRTNK
PEFTSWSMVYDKRSATFYRNKISLSTVDGRIECDFELPADSPTPYEEYVLSEEYEFRTSTLQYDQATDEFYFHVKTRKMDTDGEAVEIEGSDDTGHQTVL
GIDLGVNSLAVASTATFWSGDGYDHWIREFEKRRAEMQQRGTQAAHNAWLRLGKRERAWRKQYIHMVANEIVDEAVDHDCDVIVFEELTDIRERLPQADW
HHVWAFHRLVEYVAYKAPERGVAVEQVEPAHTSQRCSRTDCGFTHEDNRDSEQFQCLKCGYEINADYNGAKNIALRYMRKRQHRLRSSPTSRGADAPVDV
RVHGGTLNDDGYRPTADS

 

Blast result :
Comments
ISHsal14 is 82% (TnpB) aa similar to ISNaoc8.
References
1] Pfeiffer F., Marchfelder A., Habermann BH., Dyall-Smith M. (2018) Direct submission.
2] Pfeiffer F, Marchfelder A, Habermann B, Dyall-Smith ML. (2019) Microbiol Resour Announc. 11;8(28).