ISHsal12
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP038631 | ND | Halobacterium salinarum | Halobacterium salinarum DSM 3754 Halobacterium salinarum 91-R6 |
DNA section
IS Length : 1414 bp
Ends
Left end : TGACACCCACCTAATTCAGCGAGGGAGTCCCCGCCGTTCACGGCAGGCGGGAACCGCGTAAGCTCTGTGCCGCAACCGCAGTACAGTAGCATGGTAACTG II struct. : Yes
Right end : GGGACGCTGAACGGAAACGGCGACTACTCGCCTTCCACAGTATAGTGGACAGACCGGGAGTCAACCGACAAACCTCGCCGTTCACGGCGAGGTAGGTGAT II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CGTCGCCCCTGG | CGGAAGAACAAC | TGAT |
DNA sequence
TGACACCCACCTAATTCAGCGAGGGAGTCCCCGCCGTTCACGGCAGGCGGGAACCGCGTAAGCTCTGTGCCGCAACCGCAGTACAGTAGCATGGTAACTG
CCTGAAATTTATATAATATTGACCCCACATGTGGTATGTAGATGGAGCTTCAGCGTACTGCTGTCGTTAAGCTCTCCGTCCCCAACGAGCGCCAAGACGA
CCTGAAACGGACAATGGATACGTTTCGGGACGCTTCCCAGAGGTTTGCTGATCGGGGATGGCAGGGTGACGACAGTGGCTACGTGATAACGTCGCGCTCT
CGTCTTCAACCACTTGTCTACGACGACATACGGGAAGACACCGGTTTACACTCGGATTTGACTGTGGCCGCCGTCAACCATGCGTCAGACGCTCTCTCCG
GGTGCGTAGACCGGATGAAGGAAGGTGAACGAACCTCGAAACCGGTGTTCACCTCGAATACGACCGTCTACAACACAAACGCGATTACGTACTTTGACGG
CTACTGTTCGTTGGCCGCATACGGAAGTGGTCGTGTTCACGCCGAGTATGTCTACCCGGACGACTCTCTGCAAGCTGAATACATGGAGGGTGACGAGTGG
ACAAAGCAGGGCGCGAAGCTCCGCTACGACTGTCAGTCAGATACCTACTACCTACACGTTTCCGTCAAGCAGGAACGTGAAGATTCGTCGGAAGGAGCCG
AGAGCCGAACAGTTCTCGGCGTGGACCGGAACGTGGACGGGTATCTGGCAGTCACAAGCACAGGCGCGTTCATCGGGAACGCGGACTTGCTGAACCACAA
ACGTCGCGAGTACGAACGTCGCCGCAACCGCCTACAACAGACAGGCACACGGAACGCACATCTTACAATTCAGTCCATCGGGGATACTTTTGCCAACTGG
TCTGAAGACTTCTTGCACCAGGCGTCAAAGCGGTTGGTGAAAGAAGCCGCCTCACAGGACTGTTCGGTAATCGTATTCGAGGACCTGAAACGGATACGAG
ACCGGATTTCTGGCGCCTCAAAGTTCCAACAATGGGCGTTCCGCGAGTTGAAACGCCAAGCCGAATACAAAGCTCGTGCGCATGGAATCGCCGTCGAGTC
AGTCCACCCGGCCTACACCAGCCAGCGGTGCAGTCACACCAATTGTGGCTTCACCCACGAGGACAACCGCGACGGCGACGAGTTTGCCTGTCAGAAATGC
GGCAAGGAGCTACACAGCGACTACAATGCGGCACGAAACATAGCACATCGGTATGTCCAGAATCGGCTCAAGTCTGGTTCTGGACGGGCGACCAATCACC
TCGCCCTGAAGTCGGGGACGCTGAACGGAAACGGCGACTACTCGCCTTCCACAGTATAGTGGACAGACCGGGAGTCAACCGACAAACCTCGCCGTTCACG
GCGAGGTAGGTGAT
CCTGAAATTTATATAATATTGACCCCACATGTGGTATGTAGATGGAGCTTCAGCGTACTGCTGTCGTTAAGCTCTCCGTCCCCAACGAGCGCCAAGACGA
CCTGAAACGGACAATGGATACGTTTCGGGACGCTTCCCAGAGGTTTGCTGATCGGGGATGGCAGGGTGACGACAGTGGCTACGTGATAACGTCGCGCTCT
CGTCTTCAACCACTTGTCTACGACGACATACGGGAAGACACCGGTTTACACTCGGATTTGACTGTGGCCGCCGTCAACCATGCGTCAGACGCTCTCTCCG
GGTGCGTAGACCGGATGAAGGAAGGTGAACGAACCTCGAAACCGGTGTTCACCTCGAATACGACCGTCTACAACACAAACGCGATTACGTACTTTGACGG
CTACTGTTCGTTGGCCGCATACGGAAGTGGTCGTGTTCACGCCGAGTATGTCTACCCGGACGACTCTCTGCAAGCTGAATACATGGAGGGTGACGAGTGG
ACAAAGCAGGGCGCGAAGCTCCGCTACGACTGTCAGTCAGATACCTACTACCTACACGTTTCCGTCAAGCAGGAACGTGAAGATTCGTCGGAAGGAGCCG
AGAGCCGAACAGTTCTCGGCGTGGACCGGAACGTGGACGGGTATCTGGCAGTCACAAGCACAGGCGCGTTCATCGGGAACGCGGACTTGCTGAACCACAA
ACGTCGCGAGTACGAACGTCGCCGCAACCGCCTACAACAGACAGGCACACGGAACGCACATCTTACAATTCAGTCCATCGGGGATACTTTTGCCAACTGG
TCTGAAGACTTCTTGCACCAGGCGTCAAAGCGGTTGGTGAAAGAAGCCGCCTCACAGGACTGTTCGGTAATCGTATTCGAGGACCTGAAACGGATACGAG
ACCGGATTTCTGGCGCCTCAAAGTTCCAACAATGGGCGTTCCGCGAGTTGAAACGCCAAGCCGAATACAAAGCTCGTGCGCATGGAATCGCCGTCGAGTC
AGTCCACCCGGCCTACACCAGCCAGCGGTGCAGTCACACCAATTGTGGCTTCACCCACGAGGACAACCGCGACGGCGACGAGTTTGCCTGTCAGAAATGC
GGCAAGGAGCTACACAGCGACTACAATGCGGCACGAAACATAGCACATCGGTATGTCCAGAATCGGCTCAAGTCTGGTTCTGGACGGGCGACCAATCACC
TCGCCCTGAAGTCGGGGACGCTGAACGGAAACGGCGACTACTCGCCTTCCACAGTATAGTGGACAGACCGGGAGTCAACCGACAAACCTCGCCGTTCACG
GCGAGGTAGGTGAT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1218 bp | 405 aa | 142 | 1359 | + | No |
AG : TnpB
ORF sequence :
MELQRTAVVKLSVPNERQDDLKRTMDTFRDASQRFADRGWQGDDSGYVITSRSRLQPLVYDDIREDTGLHSDLTVAAVNHASDALSGCVDRMKEGERTSK
PVFTSNTTVYNTNAITYFDGYCSLAAYGSGRVHAEYVYPDDSLQAEYMEGDEWTKQGAKLRYDCQSDTYYLHVSVKQEREDSSEGAESRTVLGVDRNVDG
YLAVTSTGAFIGNADLLNHKRREYERRRNRLQQTGTRNAHLTIQSIGDTFANWSEDFLHQASKRLVKEAASQDCSVIVFEDLKRIRDRISGASKFQQWAF
RELKRQAEYKARAHGIAVESVHPAYTSQRCSHTNCGFTHEDNRDGDEFACQKCGKELHSDYNAARNIAHRYVQNRLKSGSGRATNHLALKSGTLNGNGDY
SPSTV
PVFTSNTTVYNTNAITYFDGYCSLAAYGSGRVHAEYVYPDDSLQAEYMEGDEWTKQGAKLRYDCQSDTYYLHVSVKQEREDSSEGAESRTVLGVDRNVDG
YLAVTSTGAFIGNADLLNHKRREYERRRNRLQQTGTRNAHLTIQSIGDTFANWSEDFLHQASKRLVKEAASQDCSVIVFEDLKRIRDRISGASKFQQWAF
RELKRQAEYKARAHGIAVESVHPAYTSQRCSHTNCGFTHEDNRDGDEFACQKCGKELHSDYNAARNIAHRYVQNRLKSGSGRATNHLALKSGTLNGNGDY
SPSTV
Blast result :
Comments
ISHsal2 is 74% (TnpB) aa similar to ISNph9.
The cleavage site on the left end seems to not correspond to the guide sequence near the secondary structure.
The cleavage site on the left end seems to not correspond to the guide sequence near the secondary structure.
References
1] Pfeiffer F., Marchfelder A., Habermann BH., Dyall-Smith M. (2018) Direct submission.
2] Pfeiffer F, Marchfelder A, Habermann B, Dyall-Smith ML. (2019) Microbiol Resour Announc. 11;8(28).
2] Pfeiffer F, Marchfelder A, Habermann B, Dyall-Smith ML. (2019) Microbiol Resour Announc. 11;8(28).