ISHsal13
- Family IS200/IS605
- Group IS605
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP038631 | ND | Halobacterium salinarum | Halobacterium salinarum DSM 3754 Halobacterium salinarum 91-R6 |
DNA section
IS Length : 1701 bp
Ends
Left end : AGCGGTAGCGAGGCGAAAGCCCACCCGTTCACGGGTGGGATGAAGCCGACAACTGGGAATCTTTCCACGCTCGTAGGCACGGCTGGGGTTGAATGTCTGC II struct. : Yes
Right end : TCATCGTCCACCGTGACGACGAACCTGCGAACCTCTCCGTATCCGTGGGTTCAACCCCCAGTGGGGGAACCCCACGGCTTTAGCCGTGGGAGGATGTCAG II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GTTTTCAGCACG | TTAC | TGGATGTAGCTC | TCAG |
DNA sequence
AGCGGTAGCGAGGCGAAAGCCCACCCGTTCACGGGTGGGATGAAGCCGACAACTGGGAATCTTTCCACGCTCGTAGGCACGGCTGGGGTTGAATGTCTGC
GTAACATCTTTCGGTGAGTGACTTCTACATAGTGACGATGCCTCGTGGGTTCGACAGGGAACGTACCAACGTCCACAAACTCCAGTACCACTTCATCTGG
TGCCCGAAGTACCGCAAATCGGTGCTTGAAGGCGAGGTACGTGACCGTCTCGAAGAACTCATCGAGGAGAAAGCCGACGAACTCGGGTTGGAGATACTGG
AGTTGGCAATTCGCCCCGACCACGTACACCTGTTCATCACAGGCGACCCGACCCTTGCCCCGAACAAGATAATGCAACAGGTCAAGGGCTACTCCTCGCG
CCACCTCCGAGACGAGTTCGACTTCGGCTTGCCGTCGCTGTGGACGCGCTCGTACTTCGTCTCAAGTGCGGGCGACGTATCCAGCGAAGTCATTGAGGAG
TACATCGACGCCCAAGCAGGTGAGTAGTCATGCAACGGAACGTCTCAACCACGGTGCGGGTCAAACTCCACTCGCTGACCAACAAGAAAGCTGACCTGCT
CGCCCGTGAGTACGAGGCGTTCCAGACTGAGGTTCACGGCGGAGACGCCAACCTCTACTCCGCGACCGACCAGCAGGCGTCGAAGGTGCAACGACAGAAA
GACCCGAACCCCGACACCGAACAGCCCGTCGTTCTCCGCAACGACGTGTTGGACGTGTCCTACGACGAGGACACCGTTCTCTCGTCGTGGTGGGTCAAAG
TCCCCGTCTACGACCCCGAACGGGGACGAGGAAACTCCATCTGGTGCCCTGCCCACGTTCCGCACAAAGACGAACAACTCGTCCGCAAGGGTGATATTCG
GGACAGCGAACTGGTGCGCCGTGACGGTGACTGGTACGTCCATCTCGTCGTGAAGCGGTCTGTGACCGTCCAAGACGAGTACGACGACGTGCTGGCTATC
GATATGGGCACACGGTGGGTCGCTACCTGCGCGTTCCTCTCCGACCGCAAAACCACCTTCTACGGCGAGGACGTGCGCCGTATCCGCGAACACTACAAGC
AACTCCGCAAGTCCATCGGGAAATCGAAACCCCGACAGGGACAACAGGTGGTCGAGCGTATCGGTGACGCTGAAACGCGGAAGGTGGACGACCGCCTCCA
CAAAATTGCTCGGCACATCGTGGAGGATGCCGAGGAACGGAACGCAGTCATCGTCGTGGGCGACCTCGGCGGAATTCGCAAGGACAACGACAAGGGACGG
TACGTCAACGACAAGACCCACAAGATGCCGTTCGCCCGCCTGCTCAACTACATCGAATACAAAGCCCACGACGCAGGCATCGACGTGCAGTTGGTCGAAG
AATACGACACGTCGCAGACGTGCAACCGCTGTGCTTGCGAGGGTGTCCGTGAGACGCAGGGACGCTTCGAGTGCCCCGAGTGCGGGTTGGACGACAACGC
GGACAAGAACGGTGCGCTCAACATCGGCAAACGAGCCTTGGGCAAGTTCGAAAGACCGCTGTCCGAGGCGGGGGTCGTACTGGCACGGCCCGAAACGCAG
GTCATCGTCCACCGTGACGACGAACCTGCGAACCTCTCCGTATCCGTGGGTTCAACCCCCAGTGGGGGAACCCCACGGCTTTAGCCGTGGGAGGATGTCA
G
GTAACATCTTTCGGTGAGTGACTTCTACATAGTGACGATGCCTCGTGGGTTCGACAGGGAACGTACCAACGTCCACAAACTCCAGTACCACTTCATCTGG
TGCCCGAAGTACCGCAAATCGGTGCTTGAAGGCGAGGTACGTGACCGTCTCGAAGAACTCATCGAGGAGAAAGCCGACGAACTCGGGTTGGAGATACTGG
AGTTGGCAATTCGCCCCGACCACGTACACCTGTTCATCACAGGCGACCCGACCCTTGCCCCGAACAAGATAATGCAACAGGTCAAGGGCTACTCCTCGCG
CCACCTCCGAGACGAGTTCGACTTCGGCTTGCCGTCGCTGTGGACGCGCTCGTACTTCGTCTCAAGTGCGGGCGACGTATCCAGCGAAGTCATTGAGGAG
TACATCGACGCCCAAGCAGGTGAGTAGTCATGCAACGGAACGTCTCAACCACGGTGCGGGTCAAACTCCACTCGCTGACCAACAAGAAAGCTGACCTGCT
CGCCCGTGAGTACGAGGCGTTCCAGACTGAGGTTCACGGCGGAGACGCCAACCTCTACTCCGCGACCGACCAGCAGGCGTCGAAGGTGCAACGACAGAAA
GACCCGAACCCCGACACCGAACAGCCCGTCGTTCTCCGCAACGACGTGTTGGACGTGTCCTACGACGAGGACACCGTTCTCTCGTCGTGGTGGGTCAAAG
TCCCCGTCTACGACCCCGAACGGGGACGAGGAAACTCCATCTGGTGCCCTGCCCACGTTCCGCACAAAGACGAACAACTCGTCCGCAAGGGTGATATTCG
GGACAGCGAACTGGTGCGCCGTGACGGTGACTGGTACGTCCATCTCGTCGTGAAGCGGTCTGTGACCGTCCAAGACGAGTACGACGACGTGCTGGCTATC
GATATGGGCACACGGTGGGTCGCTACCTGCGCGTTCCTCTCCGACCGCAAAACCACCTTCTACGGCGAGGACGTGCGCCGTATCCGCGAACACTACAAGC
AACTCCGCAAGTCCATCGGGAAATCGAAACCCCGACAGGGACAACAGGTGGTCGAGCGTATCGGTGACGCTGAAACGCGGAAGGTGGACGACCGCCTCCA
CAAAATTGCTCGGCACATCGTGGAGGATGCCGAGGAACGGAACGCAGTCATCGTCGTGGGCGACCTCGGCGGAATTCGCAAGGACAACGACAAGGGACGG
TACGTCAACGACAAGACCCACAAGATGCCGTTCGCCCGCCTGCTCAACTACATCGAATACAAAGCCCACGACGCAGGCATCGACGTGCAGTTGGTCGAAG
AATACGACACGTCGCAGACGTGCAACCGCTGTGCTTGCGAGGGTGTCCGTGAGACGCAGGGACGCTTCGAGTGCCCCGAGTGCGGGTTGGACGACAACGC
GGACAAGAACGGTGCGCTCAACATCGGCAAACGAGCCTTGGGCAAGTTCGAAAGACCGCTGTCCGAGGCGGGGGTCGTACTGGCACGGCCCGAAACGCAG
GTCATCGTCCACCGTGACGACGAACCTGCGAACCTCTCCGTATCCGTGGGTTCAACCCCCAGTGGGGGAACCCCACGGCTTTAGCCGTGGGAGGATGTCA
G
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
390 bp | 129 aa | 138 | 527 | + | No |
Chemistry : Y1
ORF sequence :
MPRGFDRERTNVHKLQYHFIWCPKYRKSVLEGEVRDRLEELIEEKADELGLEILELAIRPDHVHLFITGDPTLAPNKIMQQVKGYSSRHLRDEFDFGLPS
LWTRSYFVSSAGDVSSEVIEEYIDAQAGE
LWTRSYFVSSAGDVSSEVIEEYIDAQAGE
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1155 bp | 384 aa | 530 | 1684 | + | No |
AG : TnpB
ORF sequence :
MQRNVSTTVRVKLHSLTNKKADLLAREYEAFQTEVHGGDANLYSATDQQASKVQRQKDPNPDTEQPVVLRNDVLDVSYDEDTVLSSWWVKVPVYDPERGR
GNSIWCPAHVPHKDEQLVRKGDIRDSELVRRDGDWYVHLVVKRSVTVQDEYDDVLAIDMGTRWVATCAFLSDRKTTFYGEDVRRIREHYKQLRKSIGKSK
PRQGQQVVERIGDAETRKVDDRLHKIARHIVEDAEERNAVIVVGDLGGIRKDNDKGRYVNDKTHKMPFARLLNYIEYKAHDAGIDVQLVEEYDTSQTCNR
CACEGVRETQGRFECPECGLDDNADKNGALNIGKRALGKFERPLSEAGVVLARPETQVIVHRDDEPANLSVSVGSTPSGGTPRL
GNSIWCPAHVPHKDEQLVRKGDIRDSELVRRDGDWYVHLVVKRSVTVQDEYDDVLAIDMGTRWVATCAFLSDRKTTFYGEDVRRIREHYKQLRKSIGKSK
PRQGQQVVERIGDAETRKVDDRLHKIARHIVEDAEERNAVIVVGDLGGIRKDNDKGRYVNDKTHKMPFARLLNYIEYKAHDAGIDVQLVEEYDTSQTCNR
CACEGVRETQGRFECPECGLDDNADKNGALNIGKRALGKFERPLSEAGVVLARPETQVIVHRDDEPANLSVSVGSTPSGGTPRL
Blast result :
Comments
ISHsal13 is 100% (transposase) and 97% (TnpB) aa similar to ISHhu3.
In the genome, this element is interrupted by a copy of ISHsal5.
In the genome, this element is interrupted by a copy of ISHsal5.
References
1] Pfeiffer F., Marchfelder A., Habermann BH., Dyall-Smith M. (2018) Direct submission.
2] Pfeiffer F, Marchfelder A, Habermann B, Dyall-Smith ML. (2019) Microbiol Resour Announc. 11;8(28).
2] Pfeiffer F, Marchfelder A, Habermann B, Dyall-Smith ML. (2019) Microbiol Resour Announc. 11;8(28).