ISHsal8
- Family IS5
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CP038633 | ND | Halobacterium salinarum | Halobacterium salinarum DSM 3754 Halobacterium salinarum 91-R6 plasmid pHSAL2 |
DNA section
IS Length : 1069 bp
Ends
IR Length : 22/26
IRL : GAGCGTGTCATAGAAAGCGTCACGTACGAAGCTGCAGGGTGCGGAAAGTG
IRR : GAGCGTGTCATAGAAACCATCTCATAGCTTGAGTTTCTCGCGGCCAGGGT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CCTCGGTAATCA | CTAACAGTACTA | 0 |
DNA sequence
GAGCGTGTCATAGAAAGCGTCACGTACGAAGCTGCAGGGTGCGGAAAGTGTGTCCAGCACAACCGCGACCCTGCAAGATGTAGCATCGGTAGACGACTTC
TTGAATGCGGCGGCTACCGAGACAGTACCGCTATTCGAACACCTTGAGTTCGCGTTTCTCCTGGAGTACGACGTGTTCGCCCCCGCTCGCCGGGGGCGAA
CACGAGTCCATCAACCACCAGATCTCTTTCGGGGCTTTCTCCACTGCTACTACGAGAACGTCTACGGCACACGCCCGGTGACACGAGAACTCCAGCACAG
CCTCGTCTGGTACTACTGCGGACTCGACAAACCGCCATCCAGAGACACGGTTGACCGCTTTCTCACCGACCTCGAACACGTTATTGACGATGTCTTCGAC
AGGCTCGTCGAGCAGGCCGCCGCCCGCGGCCTGCTCGACTCCACCTACTCGATCGATTCGACCCACATCGAAGCGATCCAGTACAACGACGCAGCATCTT
GGAACTACGATCCAACAGCTGAGGAGTACTACTACGGCTTCGGCTGTACGATTGTCTCAACCGGCTCAAAGATCCCGATAGCAGCGGAGTTCACACAAGC
TAAACAAGCGGATCAGGAGACGGCGATGCGCGTCACGCGTGACGCGCTTGCCGTTGACGCACCAATCTGGATGCTTGGAGACAGCGCGTACGACATTCTC
GACTGGCACGACCACCTGCTGGCCGCAGGGGTCGTGCCAGTCGTTCCGTACAACCCGCGAAACACTGACGACCCGAAAGATATCGAGTACAGGGTCGAAG
ACCGCATCGAAGAACACAGCCAGGACGTTCAGCTGAAGCAATCTATTCTAGACGAGACGTACAACCACCGGACAGGAGTCGAACGAACTAACGACGCGGT
CAAGGACTGCGGCCTCGGGCACGTCCGCGCCCGAGGCCGCGTCCATGCACGAACAGAAGTGTTCCTTGCACTGTGTCTCCGACTCGTCGTTGCAATCACC
AACTTTGAGCGGGGTGATGACCCTGGCCGCGAGAAACTCAAGCTATGAGATGGTTTCTATGACACGCTC
TTGAATGCGGCGGCTACCGAGACAGTACCGCTATTCGAACACCTTGAGTTCGCGTTTCTCCTGGAGTACGACGTGTTCGCCCCCGCTCGCCGGGGGCGAA
CACGAGTCCATCAACCACCAGATCTCTTTCGGGGCTTTCTCCACTGCTACTACGAGAACGTCTACGGCACACGCCCGGTGACACGAGAACTCCAGCACAG
CCTCGTCTGGTACTACTGCGGACTCGACAAACCGCCATCCAGAGACACGGTTGACCGCTTTCTCACCGACCTCGAACACGTTATTGACGATGTCTTCGAC
AGGCTCGTCGAGCAGGCCGCCGCCCGCGGCCTGCTCGACTCCACCTACTCGATCGATTCGACCCACATCGAAGCGATCCAGTACAACGACGCAGCATCTT
GGAACTACGATCCAACAGCTGAGGAGTACTACTACGGCTTCGGCTGTACGATTGTCTCAACCGGCTCAAAGATCCCGATAGCAGCGGAGTTCACACAAGC
TAAACAAGCGGATCAGGAGACGGCGATGCGCGTCACGCGTGACGCGCTTGCCGTTGACGCACCAATCTGGATGCTTGGAGACAGCGCGTACGACATTCTC
GACTGGCACGACCACCTGCTGGCCGCAGGGGTCGTGCCAGTCGTTCCGTACAACCCGCGAAACACTGACGACCCGAAAGATATCGAGTACAGGGTCGAAG
ACCGCATCGAAGAACACAGCCAGGACGTTCAGCTGAAGCAATCTATTCTAGACGAGACGTACAACCACCGGACAGGAGTCGAACGAACTAACGACGCGGT
CAAGGACTGCGGCCTCGGGCACGTCCGCGCCCGAGGCCGCGTCCATGCACGAACAGAAGTGTTCCTTGCACTGTGTCTCCGACTCGTCGTTGCAATCACC
AACTTTGAGCGGGGTGATGACCCTGGCCGCGAGAAACTCAAGCTATGAGATGGTTTCTATGACACGCTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 999 bp | 332 aa | 50 | 1048 | + | No |
Chemistry : DDE
ORF sequence :
MSSTTATLQDVASVDDFLNAAATETVPLFEHLEFAFLLEYDVFAPARRGRTRVHQPPDLFRGFLHCYYENVYGTRPVTRELQHSLVWYYCGLDKPPSRDT
VDRFLTDLEHVIDDVFDRLVEQAAARGLLDSTYSIDSTHIEAIQYNDAASWNYDPTAEEYYYGFGCTIVSTGSKIPIAAEFTQAKQADQETAMRVTRDAL
AVDAPIWMLGDSAYDILDWHDHLLAAGVVPVVPYNPRNTDDPKDIEYRVEDRIEEHSQDVQLKQSILDETYNHRTGVERTNDAVKDCGLGHVRARGRVHA
RTEVFLALCLRLVVAITNFERGDDPGREKLKL
VDRFLTDLEHVIDDVFDRLVEQAAARGLLDSTYSIDSTHIEAIQYNDAASWNYDPTAEEYYYGFGCTIVSTGSKIPIAAEFTQAKQADQETAMRVTRDAL
AVDAPIWMLGDSAYDILDWHDHLLAAGVVPVVPYNPRNTDDPKDIEYRVEDRIEEHSQDVQLKQSILDETYNHRTGVERTNDAVKDCGLGHVRARGRVHA
RTEVFLALCLRLVVAITNFERGDDPGREKLKL
Blast result :
Comments
ISHsal8 is 96% aa similar to ISNpe15.
References
1] Pfeiffer F., Marchfelder A., Habermann BH., Dyall-Smith M. (2018) Direct submission.
2] Pfeiffer F, Marchfelder A, Habermann B, Dyall-Smith ML. (2019) Microbiol Resour Announc. 11;8(28).
2] Pfeiffer F, Marchfelder A, Habermann B, Dyall-Smith ML. (2019) Microbiol Resour Announc. 11;8(28).