ISHsal6
- Family IS5
- Group ISH1
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CP038632 | ND | Halobacterium salinarum | Halobacterium salinarum DSM 3754 Halobacterium salinarum 91-R6 plasmid pHSAL1 |
DNA section
IS Length : 979 bp
Ends
IR Length : 30/40
IRL : GGGTGTGTTTAGACGCCCGGAACCGGGTTGCTTAGCGACTCACGGACTAG
IRR : GGGCGTGTTTAGACGCTCACAATCGTGCGGTTTAGCGGCTGAGCGCGGCT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GCTCAGCGATGA | AATTGATC | TTGACCTCGGCG | 8 |
DNA sequence
GGGTGTGTTTAGACGCCCGGAACCGGGTTGCTTAGCGACTCACGGACTAGTGTTGCCTTCCTAGTAGCTGTCGCTAAATGTCCAACTTACTAGGAAGTGA
AGCGGGTAGGTTCGGTTGTGCCAACGAAGCTAGCCCGCTTCACTAGTCGCGTTGTTTCGCTCGCTCAAAAAGCCGTCGTCGGAACCCCGAAACCCGCGTT
ACGACGCGGTGAAGACGGCTACGCGGACTGGGTGATCGTCTCGATTCACGGCCTCAAAACGTATCTTGATCTTCCGTACCGGCGGCTGCTGGACGTGCTG
TACGAGATGCCGCAAATCAGTCGAATTCTCGGCCTAGAACCGACTGAACTGCCCGATTATTCCACCGTCTGTTCGCGGATGCAGGAGCTGAAAATGTCGA
TCTGGCGGCGACTTTTGCAGCTGTCGGCGGAGCTCCACGATACCGGCGAGATTCAGGCGATCGACGCAACCGGATTCGATCGGCGCGGAGCGAGTCGTCG
TTACGCTAAACGGACGAATTACACGTTCAGCGCGGTCAAAACGACGGTTCTCGTTGACTGCGATACGAGTACAATTCTAGATATACACTGTTCGATGAAA
CGACCACACGATACGCAGATCGGCGAACAGGTGCTCACACGAAATCTTGACCGAATCGAAACGATCACCGCCGACAAAGGCTACGACTGGGACGAATTAC
GCGGAAATCTAAGGGAAGCGGGCGTGAGACCAGTGATCAAACATCGTGAATTTTCGTCGCTGGACGCCGCTCACAACGCCAGACTCGACGACGAAACCTA
CCACCGCAGATCCGTCGTCGAGTCAGTTATTCGCACGCTGAAACGCCGCTTCGGCGATACGCTGCGAGCGCGAACCTGGTTCGGGCAATTCCGTGAACTC
GCGCTCAAAGCTGCTGTCAAAAATATCGAAGCCGCGCTCAGCCGCTAAACCGCACGATTGTGAGCGTCTAAACACGCCC
AGCGGGTAGGTTCGGTTGTGCCAACGAAGCTAGCCCGCTTCACTAGTCGCGTTGTTTCGCTCGCTCAAAAAGCCGTCGTCGGAACCCCGAAACCCGCGTT
ACGACGCGGTGAAGACGGCTACGCGGACTGGGTGATCGTCTCGATTCACGGCCTCAAAACGTATCTTGATCTTCCGTACCGGCGGCTGCTGGACGTGCTG
TACGAGATGCCGCAAATCAGTCGAATTCTCGGCCTAGAACCGACTGAACTGCCCGATTATTCCACCGTCTGTTCGCGGATGCAGGAGCTGAAAATGTCGA
TCTGGCGGCGACTTTTGCAGCTGTCGGCGGAGCTCCACGATACCGGCGAGATTCAGGCGATCGACGCAACCGGATTCGATCGGCGCGGAGCGAGTCGTCG
TTACGCTAAACGGACGAATTACACGTTCAGCGCGGTCAAAACGACGGTTCTCGTTGACTGCGATACGAGTACAATTCTAGATATACACTGTTCGATGAAA
CGACCACACGATACGCAGATCGGCGAACAGGTGCTCACACGAAATCTTGACCGAATCGAAACGATCACCGCCGACAAAGGCTACGACTGGGACGAATTAC
GCGGAAATCTAAGGGAAGCGGGCGTGAGACCAGTGATCAAACATCGTGAATTTTCGTCGCTGGACGCCGCTCACAACGCCAGACTCGACGACGAAACCTA
CCACCGCAGATCCGTCGTCGAGTCAGTTATTCGCACGCTGAAACGCCGCTTCGGCGATACGCTGCGAGCGCGAACCTGGTTCGGGCAATTCCGTGAACTC
GCGCTCAAAGCTGCTGTCAAAAATATCGAAGCCGCGCTCAGCCGCTAAACCGCACGATTGTGAGCGTCTAAACACGCCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 831 bp | 276 aa | 118 | 948 | + | No |
Chemistry : DDE
ORF sequence :
MPTKLARFTSRVVSLAQKAVVGTPKPALRRGEDGYADWVIVSIHGLKTYLDLPYRRLLDVLYEMPQISRILGLEPTELPDYSTVCSRMQELKMSIWRRLL
QLSAELHDTGEIQAIDATGFDRRGASRRYAKRTNYTFSAVKTTVLVDCDTSTILDIHCSMKRPHDTQIGEQVLTRNLDRIETITADKGYDWDELRGNLRE
AGVRPVIKHREFSSLDAAHNARLDDETYHRRSVVESVIRTLKRRFGDTLRARTWFGQFRELALKAAVKNIEAALSR
QLSAELHDTGEIQAIDATGFDRRGASRRYAKRTNYTFSAVKTTVLVDCDTSTILDIHCSMKRPHDTQIGEQVLTRNLDRIETITADKGYDWDELRGNLRE
AGVRPVIKHREFSSLDAAHNARLDDETYHRRSVVESVIRTLKRRFGDTLRARTWFGQFRELALKAAVKNIEAALSR
Blast result :
Comments
ISHsal6 is 79% aa similar to ISHtu1.
References
1] Pfeiffer F., Marchfelder A., Habermann BH., Dyall-Smith M. (2018) Direct submission.
2] Pfeiffer F, Marchfelder A, Habermann B, Dyall-Smith ML. (2019) Microbiol Resour Announc. 11;8(28).
2] Pfeiffer F, Marchfelder A, Habermann B, Dyall-Smith ML. (2019) Microbiol Resour Announc. 11;8(28).