ISHsal4
- Family IS4
- Group ISH8
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP038633 | ND | Halobacterium salinarum | Halobacterium salinarum DSM 3754 Halobacterium salinarum 91-R6 plasmid pHSAL2 |
DNA section
IS Length : 1403 bp
Ends
IR Length : 19/20
IRL : CATCCGTCTTTAGCTAAGACGAGAACCGCGTGACAGCGACGGCTTATCGA
IRR : CATTCGTCTTTAGCTAAGACTCACACCTCGGTTGCGTAGCGGTAGCGAGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GAGGTCTCCAAT | ATGTGCGTGAAC | 0 | |
AACCTACCACAG | GTCTCGCCCGTC | 0 | |
TATAACCTTTGC | GTCTCGCCCGTC | 0 |
DNA sequence
CATCCGTCTTTAGCTAAGACGAGAACCGCGTGACAGCGACGGCTTATCGAGGCTACTTTTCGAGAGGAATGAGGAGGAGAAGTCTGTGCACAACCCTCGC
TCCTCAACGAGAATCATGCGTCGGCTCACTACACTGTTTCCCTCCGAGTTCCTCGAAGAGCACGCCGAGGAACTCGGCGTGGTTGAGCGAGAGGGCAAGC
TTCAGATTCCCGTCCTCGTGTGGGCGCTCGTGTTCGGCTTCGCCGCAGGCGAGAGCCGAACACTCGCCGGGTTCAGACGCTGCTACAACTCCACAGCTGA
TGAAACGATCTCTCCCGGTGGATTCCATCAGCGGTTGACGCCGACGTTGGCAGAGTATCTCCGCGACCTCGTCGAGCGTGGTCTCGACGAGGTCGCTGTT
CCCAACGCTGTTGACGCTGATATCGACCGATTCAGAGACGTGATGATCGCTGATGGAACGGTGTTGCGGTTGCACGAATTCCTCTCTGATGAGTTCCAAG
CCCGTCACGAGGAGCAGGCTGGAGCGAAGCTCCACCTGCTCCACAACGCCACCGAGCAGACGATTGAACGACTCGACGTGACCGACGAAAAAGCGCACGA
CAGCACGCTGTTCAAGACGGGTTCGTGGCTCCAAGGACGGCTCGTTCTGTTCGATCTAGCGTACTTCAAGTACCGCCGGTTCGCGTTAATCGACGAGAAC
GACGGCTACTTCGTGAGTCGGCTGAAGCAGAACGCGAATCCGGTGATAACGGAGGAATTACGGGAATGGCGCGGGCGCGCCATTCCCTTAGAGGGCAAGC
AGATCCACGATGTGGTCGATGATCTCTCTCGGAAGTACATCGACGTTGAGGTCGAAGCGGAGTTCAAGCGAGGCCAGTACGAAGGAACGCGGTCGCTGGA
CACGAAGCGGTTCCGCGTCGTCGGCGTCCGTGACAAGGACGCCGACGACTACCATCTGTATATCACGAATCTATCGCGAGAGGAGTTCTTCCCGGAGGAT
TTAGCAACGCTGTATCGGTGTCGGTGGGAGGTAGAAACGCTGTTTCGTGAACTGAAGACGCAGTACGAGTTGGACGAGTTCGACACAAGCGACCCGGATA
TCGTGAGAATTCTGCTGTATGCGGCGTTGCTGTCGCTGCTGGTGAGTCGTGAGCTGTTGGATCTGGTGACCGAGCAGGCTGATGACGAGATCGTGTTTCC
GCCAGAACGCTGGGCGGCGACCTTCCGGTCGCACGCCCAGCTCATCCTCCACGAACTCGGTGAGTATCTCGGTTACTCACCACCGCCGTTGCTGGAGCGG
CTGATCGAGGATGCTCAGAAGATTCACCAGCAACGTCCGGTCTTACAGGAGACGCTCGCTACCGCTACGCAACCGAGGTGTGAGTCTTAGCTAAAGACGA
ATG
TCCTCAACGAGAATCATGCGTCGGCTCACTACACTGTTTCCCTCCGAGTTCCTCGAAGAGCACGCCGAGGAACTCGGCGTGGTTGAGCGAGAGGGCAAGC
TTCAGATTCCCGTCCTCGTGTGGGCGCTCGTGTTCGGCTTCGCCGCAGGCGAGAGCCGAACACTCGCCGGGTTCAGACGCTGCTACAACTCCACAGCTGA
TGAAACGATCTCTCCCGGTGGATTCCATCAGCGGTTGACGCCGACGTTGGCAGAGTATCTCCGCGACCTCGTCGAGCGTGGTCTCGACGAGGTCGCTGTT
CCCAACGCTGTTGACGCTGATATCGACCGATTCAGAGACGTGATGATCGCTGATGGAACGGTGTTGCGGTTGCACGAATTCCTCTCTGATGAGTTCCAAG
CCCGTCACGAGGAGCAGGCTGGAGCGAAGCTCCACCTGCTCCACAACGCCACCGAGCAGACGATTGAACGACTCGACGTGACCGACGAAAAAGCGCACGA
CAGCACGCTGTTCAAGACGGGTTCGTGGCTCCAAGGACGGCTCGTTCTGTTCGATCTAGCGTACTTCAAGTACCGCCGGTTCGCGTTAATCGACGAGAAC
GACGGCTACTTCGTGAGTCGGCTGAAGCAGAACGCGAATCCGGTGATAACGGAGGAATTACGGGAATGGCGCGGGCGCGCCATTCCCTTAGAGGGCAAGC
AGATCCACGATGTGGTCGATGATCTCTCTCGGAAGTACATCGACGTTGAGGTCGAAGCGGAGTTCAAGCGAGGCCAGTACGAAGGAACGCGGTCGCTGGA
CACGAAGCGGTTCCGCGTCGTCGGCGTCCGTGACAAGGACGCCGACGACTACCATCTGTATATCACGAATCTATCGCGAGAGGAGTTCTTCCCGGAGGAT
TTAGCAACGCTGTATCGGTGTCGGTGGGAGGTAGAAACGCTGTTTCGTGAACTGAAGACGCAGTACGAGTTGGACGAGTTCGACACAAGCGACCCGGATA
TCGTGAGAATTCTGCTGTATGCGGCGTTGCTGTCGCTGCTGGTGAGTCGTGAGCTGTTGGATCTGGTGACCGAGCAGGCTGATGACGAGATCGTGTTTCC
GCCAGAACGCTGGGCGGCGACCTTCCGGTCGCACGCCCAGCTCATCCTCCACGAACTCGGTGAGTATCTCGGTTACTCACCACCGCCGTTGCTGGAGCGG
CTGATCGAGGATGCTCAGAAGATTCACCAGCAACGTCCGGTCTTACAGGAGACGCTCGCTACCGCTACGCAACCGAGGTGTGAGTCTTAGCTAAAGACGA
ATG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1275 bp | 424 aa | 116 | 1390 | + | No |
Chemistry : DDE
ORF sequence :
MRRLTTLFPSEFLEEHAEELGVVEREGKLQIPVLVWALVFGFAAGESRTLAGFRRCYNSTADETISPGGFHQRLTPTLAEYLRDLVERGLDEVAVPNAVD
ADIDRFRDVMIADGTVLRLHEFLSDEFQARHEEQAGAKLHLLHNATEQTIERLDVTDEKAHDSTLFKTGSWLQGRLVLFDLAYFKYRRFALIDENDGYFV
SRLKQNANPVITEELREWRGRAIPLEGKQIHDVVDDLSRKYIDVEVEAEFKRGQYEGTRSLDTKRFRVVGVRDKDADDYHLYITNLSREEFFPEDLATLY
RCRWEVETLFRELKTQYELDEFDTSDPDIVRILLYAALLSLLVSRELLDLVTEQADDEIVFPPERWAATFRSHAQLILHELGEYLGYSPPPLLERLIEDA
QKIHQQRPVLQETLATATQPRCES
ADIDRFRDVMIADGTVLRLHEFLSDEFQARHEEQAGAKLHLLHNATEQTIERLDVTDEKAHDSTLFKTGSWLQGRLVLFDLAYFKYRRFALIDENDGYFV
SRLKQNANPVITEELREWRGRAIPLEGKQIHDVVDDLSRKYIDVEVEAEFKRGQYEGTRSLDTKRFRVVGVRDKDADDYHLYITNLSREEFFPEDLATLY
RCRWEVETLFRELKTQYELDEFDTSDPDIVRILLYAALLSLLVSRELLDLVTEQADDEIVFPPERWAATFRSHAQLILHELGEYLGYSPPPLLERLIEDA
QKIHQQRPVLQETLATATQPRCES
Blast result :
Comments
ISHsal4 is 98% aa similar to ISH8C.
References
1] Pfeiffer F., Marchfelder A., Habermann BH., Dyall-Smith M. (2018) Direct GenBank submission.
2] Pfeiffer F, Marchfelder A, Habermann B, Dyall-Smith ML. (2019) Microbiol Resour Announc. 11;8(28).
2] Pfeiffer F, Marchfelder A, Habermann B, Dyall-Smith ML. (2019) Microbiol Resour Announc. 11;8(28).