ISHsal4

  • Family IS4
  • Group ISH8
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP038633 ND Halobacterium salinarum
Halobacterium salinarum DSM 3754
Halobacterium salinarum 91-R6 plasmid pHSAL2
DNA section
IS Length : 1403 bp

Ends


IR Length : 19/20

IRL : CATCCGTCTTTAGCTAAGACGAGAACCGCGTGACAGCGACGGCTTATCGA
IRR : CATTCGTCTTTAGCTAAGACTCACACCTCGGTTGCGTAGCGGTAGCGAGC

Insertion site


Left flankDirect repeatRight flankDR Length
GAGGTCTCCAATATGTGCGTGAAC0
AACCTACCACAGGTCTCGCCCGTC0
TATAACCTTTGCGTCTCGCCCGTC0

DNA sequence

CATCCGTCTTTAGCTAAGACGAGAACCGCGTGACAGCGACGGCTTATCGAGGCTACTTTTCGAGAGGAATGAGGAGGAGAAGTCTGTGCACAACCCTCGC
TCCTCAACGAGAATCATGCGTCGGCTCACTACACTGTTTCCCTCCGAGTTCCTCGAAGAGCACGCCGAGGAACTCGGCGTGGTTGAGCGAGAGGGCAAGC
TTCAGATTCCCGTCCTCGTGTGGGCGCTCGTGTTCGGCTTCGCCGCAGGCGAGAGCCGAACACTCGCCGGGTTCAGACGCTGCTACAACTCCACAGCTGA
TGAAACGATCTCTCCCGGTGGATTCCATCAGCGGTTGACGCCGACGTTGGCAGAGTATCTCCGCGACCTCGTCGAGCGTGGTCTCGACGAGGTCGCTGTT
CCCAACGCTGTTGACGCTGATATCGACCGATTCAGAGACGTGATGATCGCTGATGGAACGGTGTTGCGGTTGCACGAATTCCTCTCTGATGAGTTCCAAG
CCCGTCACGAGGAGCAGGCTGGAGCGAAGCTCCACCTGCTCCACAACGCCACCGAGCAGACGATTGAACGACTCGACGTGACCGACGAAAAAGCGCACGA
CAGCACGCTGTTCAAGACGGGTTCGTGGCTCCAAGGACGGCTCGTTCTGTTCGATCTAGCGTACTTCAAGTACCGCCGGTTCGCGTTAATCGACGAGAAC
GACGGCTACTTCGTGAGTCGGCTGAAGCAGAACGCGAATCCGGTGATAACGGAGGAATTACGGGAATGGCGCGGGCGCGCCATTCCCTTAGAGGGCAAGC
AGATCCACGATGTGGTCGATGATCTCTCTCGGAAGTACATCGACGTTGAGGTCGAAGCGGAGTTCAAGCGAGGCCAGTACGAAGGAACGCGGTCGCTGGA
CACGAAGCGGTTCCGCGTCGTCGGCGTCCGTGACAAGGACGCCGACGACTACCATCTGTATATCACGAATCTATCGCGAGAGGAGTTCTTCCCGGAGGAT
TTAGCAACGCTGTATCGGTGTCGGTGGGAGGTAGAAACGCTGTTTCGTGAACTGAAGACGCAGTACGAGTTGGACGAGTTCGACACAAGCGACCCGGATA
TCGTGAGAATTCTGCTGTATGCGGCGTTGCTGTCGCTGCTGGTGAGTCGTGAGCTGTTGGATCTGGTGACCGAGCAGGCTGATGACGAGATCGTGTTTCC
GCCAGAACGCTGGGCGGCGACCTTCCGGTCGCACGCCCAGCTCATCCTCCACGAACTCGGTGAGTATCTCGGTTACTCACCACCGCCGTTGCTGGAGCGG
CTGATCGAGGATGCTCAGAAGATTCACCAGCAACGTCCGGTCTTACAGGAGACGCTCGCTACCGCTACGCAACCGAGGTGTGAGTCTTAGCTAAAGACGA
ATG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1275 bp424 aa1161390+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRRLTTLFPSEFLEEHAEELGVVEREGKLQIPVLVWALVFGFAAGESRTLAGFRRCYNSTADETISPGGFHQRLTPTLAEYLRDLVERGLDEVAVPNAVD
ADIDRFRDVMIADGTVLRLHEFLSDEFQARHEEQAGAKLHLLHNATEQTIERLDVTDEKAHDSTLFKTGSWLQGRLVLFDLAYFKYRRFALIDENDGYFV
SRLKQNANPVITEELREWRGRAIPLEGKQIHDVVDDLSRKYIDVEVEAEFKRGQYEGTRSLDTKRFRVVGVRDKDADDYHLYITNLSREEFFPEDLATLY
RCRWEVETLFRELKTQYELDEFDTSDPDIVRILLYAALLSLLVSRELLDLVTEQADDEIVFPPERWAATFRSHAQLILHELGEYLGYSPPPLLERLIEDA
QKIHQQRPVLQETLATATQPRCES

 

Blast result :
Comments
ISHsal4 is 98% aa similar to ISH8C.
References
1] Pfeiffer F., Marchfelder A., Habermann BH., Dyall-Smith M. (2018) Direct GenBank submission.
2] Pfeiffer F, Marchfelder A, Habermann B, Dyall-Smith ML. (2019) Microbiol Resour Announc. 11;8(28).