ISHsal3
- Family IS4
- Group ISH8
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP038631 | ND | Halobacterium salinarum | Halobacterium salinarum DSM 3754 Halobacterium salinarum 91-R6 |
DNA section
IS Length : 1403 bp
Ends
IR Length : 17/18
IRL : CATCCGTCTTTAGCTAAGACGAGAACCGCGTGACAGCGACGGCTTATCGA
IRR : CATCCGTCTTTAGTTAAGCTTCACACCTCGGTTGTGTAGCGGTAACGAGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCCCGCCTGAAT | ACCCTCTATACG | 0 |
DNA sequence
CATCCGTCTTTAGCTAAGACGAGAACCGCGTGACAGCGACGGCTTATCGAGGCTACTTTTCGAGAGGAATGAGGAGGAGAAGTCTGTGCACAACCCTCGC
TCCTCAACGAGAATCATGCGTCGGCTCACTACACTGTTTCCCTCTGAGTTCCTCGAAGAACACGCCGAGGAACTCGGCGTGGTCGAACGTGACCGCAAGC
TCCAGATCCCTGCCTTCGTTTGGGCGTTCGTGTTCGGCTTCGCCGCAGGCGAACGCCGAACACTCGCCGGGTTTAGACGCTGTTACAACTCTACTGCCGA
TGAAACGATCTCTCCGGGTGGATTCTATCAGCGGTTGACACCGACGCTTGCGGAGTACCTCCGCGACCTCGTCGAGGCCGCGCTCGACGAGGTCGCTGTT
CCTAACGCTGTTGACGCTGATCTCGACCGATTTAGAGACGTGATGATCGCTGATGGAACGGTGTTGCGGTTACACGAATTTCTCTCAGATCAGTTCGAAG
CCCGCCACGAGGAGCAGGCTGGAGCGAACCTCCACCTGCTCCACAATGCCACCGAGCAGACGATTGAACGGCTCGATACTGCTAACGAGAAAACGCACGA
CAGCACCTTGTTCAACACGGGGCCGTGGCTTGAGAATCGCCTCGTGTTGTTCGATCTCGCGTACTTCAAGTACCGCCGGTTTGCGCTGATCGACGAGAAC
GGCGGCTCCTTCGTGAGTCGGCTGAAGCAGAACGCGAATCCGCTGATTACGGGGGAGTTACGGGAATGGCGCGGTCGCGCCATTCCCTTAGAGGGCAAGC
AGCTCAGAGCTGTTCTCGACGATCTCGATCGGACGTACATCGATGTAGAAGTCGAAGTCGAATTCAAACGAGGGCCGTACAATGGGATGCGGTCACTAGA
TACGAAGCGATTTCGCGTCGTCGGCGTCCGCGACGAGGACGCCGACGACTACCACCTGTACATGACGAATTTAGCGAGGAAGGAGTTCTTTCCGGCGGAT
TTAGCGGAGATCTATCGCTGTCGGTGGGAAGTTGAGTTGCTGTTCCGGGAGCTGAAGACGCAGTACGAATTGGACGAGTTCGACACGAGTGACGAACACG
TGGTGAGGATCTTATTGTACGCAGCGCTGCTGTCGCTGCTTGTGAGCCGTGATCTGTTGGATTTAGTCACCGAGCAGGCGGATGATGAGCTTGTGTTTCC
GACGGAGCGCTGGGCGGCGACCTTTCGGTCGCACGCCCAGCTCATTCTCCACGAACTCGGTGAGTTCCTCGGCTATTCACCACCGCCGCTGCTCGACCGG
CTGATCGAAGACGCTCAAAAGATCCACAAGCAACGACCAATCTTACAAGAGACGCTCGTTACCGCTACACAACCGAGGTGTGAAGCTTAACTAAAGACGG
ATG
TCCTCAACGAGAATCATGCGTCGGCTCACTACACTGTTTCCCTCTGAGTTCCTCGAAGAACACGCCGAGGAACTCGGCGTGGTCGAACGTGACCGCAAGC
TCCAGATCCCTGCCTTCGTTTGGGCGTTCGTGTTCGGCTTCGCCGCAGGCGAACGCCGAACACTCGCCGGGTTTAGACGCTGTTACAACTCTACTGCCGA
TGAAACGATCTCTCCGGGTGGATTCTATCAGCGGTTGACACCGACGCTTGCGGAGTACCTCCGCGACCTCGTCGAGGCCGCGCTCGACGAGGTCGCTGTT
CCTAACGCTGTTGACGCTGATCTCGACCGATTTAGAGACGTGATGATCGCTGATGGAACGGTGTTGCGGTTACACGAATTTCTCTCAGATCAGTTCGAAG
CCCGCCACGAGGAGCAGGCTGGAGCGAACCTCCACCTGCTCCACAATGCCACCGAGCAGACGATTGAACGGCTCGATACTGCTAACGAGAAAACGCACGA
CAGCACCTTGTTCAACACGGGGCCGTGGCTTGAGAATCGCCTCGTGTTGTTCGATCTCGCGTACTTCAAGTACCGCCGGTTTGCGCTGATCGACGAGAAC
GGCGGCTCCTTCGTGAGTCGGCTGAAGCAGAACGCGAATCCGCTGATTACGGGGGAGTTACGGGAATGGCGCGGTCGCGCCATTCCCTTAGAGGGCAAGC
AGCTCAGAGCTGTTCTCGACGATCTCGATCGGACGTACATCGATGTAGAAGTCGAAGTCGAATTCAAACGAGGGCCGTACAATGGGATGCGGTCACTAGA
TACGAAGCGATTTCGCGTCGTCGGCGTCCGCGACGAGGACGCCGACGACTACCACCTGTACATGACGAATTTAGCGAGGAAGGAGTTCTTTCCGGCGGAT
TTAGCGGAGATCTATCGCTGTCGGTGGGAAGTTGAGTTGCTGTTCCGGGAGCTGAAGACGCAGTACGAATTGGACGAGTTCGACACGAGTGACGAACACG
TGGTGAGGATCTTATTGTACGCAGCGCTGCTGTCGCTGCTTGTGAGCCGTGATCTGTTGGATTTAGTCACCGAGCAGGCGGATGATGAGCTTGTGTTTCC
GACGGAGCGCTGGGCGGCGACCTTTCGGTCGCACGCCCAGCTCATTCTCCACGAACTCGGTGAGTTCCTCGGCTATTCACCACCGCCGCTGCTCGACCGG
CTGATCGAAGACGCTCAAAAGATCCACAAGCAACGACCAATCTTACAAGAGACGCTCGTTACCGCTACACAACCGAGGTGTGAAGCTTAACTAAAGACGG
ATG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1275 bp | 424 aa | 116 | 1390 | + | No |
Chemistry : DDE
ORF sequence :
MRRLTTLFPSEFLEEHAEELGVVERDRKLQIPAFVWAFVFGFAAGERRTLAGFRRCYNSTADETISPGGFYQRLTPTLAEYLRDLVEAALDEVAVPNAVD
ADLDRFRDVMIADGTVLRLHEFLSDQFEARHEEQAGANLHLLHNATEQTIERLDTANEKTHDSTLFNTGPWLENRLVLFDLAYFKYRRFALIDENGGSFV
SRLKQNANPLITGELREWRGRAIPLEGKQLRAVLDDLDRTYIDVEVEVEFKRGPYNGMRSLDTKRFRVVGVRDEDADDYHLYMTNLARKEFFPADLAEIY
RCRWEVELLFRELKTQYELDEFDTSDEHVVRILLYAALLSLLVSRDLLDLVTEQADDELVFPTERWAATFRSHAQLILHELGEFLGYSPPPLLDRLIEDA
QKIHKQRPILQETLVTATQPRCEA
ADLDRFRDVMIADGTVLRLHEFLSDQFEARHEEQAGANLHLLHNATEQTIERLDTANEKTHDSTLFNTGPWLENRLVLFDLAYFKYRRFALIDENGGSFV
SRLKQNANPLITGELREWRGRAIPLEGKQLRAVLDDLDRTYIDVEVEVEFKRGPYNGMRSLDTKRFRVVGVRDEDADDYHLYMTNLARKEFFPADLAEIY
RCRWEVELLFRELKTQYELDEFDTSDEHVVRILLYAALLSLLVSRDLLDLVTEQADDELVFPTERWAATFRSHAQLILHELGEFLGYSPPPLLDRLIEDA
QKIHKQRPILQETLVTATQPRCEA
Blast result :
Comments
ISHsal3 is 97% aa similar to ISH8A.
References
1] Pfeiffer F., Marchfelder A., Habermann BH., Dyall-Smith M. (2018) Direct submission.
2] Pfeiffer F, Marchfelder A, Habermann B, Dyall-Smith ML. (2019) Microbiol Resour Announc. 11;8(28).
2] Pfeiffer F, Marchfelder A, Habermann B, Dyall-Smith ML. (2019) Microbiol Resour Announc. 11;8(28).