ISDra2

  • Family IS200/IS605
  • Group IS605
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AE000513 ND Deinococcus radiodurans
Deinococcus radiodurans
DNA section
IS Length : 1737 bp

Ends


Left end : GCTTGAGGGGCGCACACTCGTGACTTCAGTCATGAGTTAGCCCCTCTCGCCCTGAAAAGGGCGATGAAAAGCGGAAGCCTCTAGCTTTTCCAGATGACAT II struct. : Yes
Right end : TCAGACACCTTAAACGCTCATGGAGGCTATGTCAGACCTGCTTCGGCGGGCAATGGTCTGCGAAGTGAGAATCACGCGACTTTAGTCGTGTGAGGTTCAA II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CTGTTCGTGCTTGATAAAACTAGGATCAA

DNA sequence

GCTTGAGGGGCGCACACTCGTGACTTCAGTCATGAGTTAGCCCCTCTCGCCCTGAAAAGGGCGATGAAAAGCGGAAGCCTCTAGCTTTTCCAGATGACAT
ATGTTATTCTTCCCCTTGAGATGAAGAAAGGCCGGGGTTACGTCTATCAGCTTGAATACCACCTCATCTGGTGCGTGAAATACCGTCATCAGGTGTTGGT
GGGTGAGGTTGCTGATGGACTGAAAGACATCCTGCGTGACATTGCCGCTCAGAACGGGCTGGAAGTCATCACGATGGAAGTCATGCCTGACCACGTTCAC
CTCCTGCTAAGCGCAACCCCACAGCAAGCCATCCCCGACTTCGTGAAGGCGCTGAAAGGCGCTTCCGCACGTCGGATGTTCGTGGCCTACCCGCAGTTGA
AAGAAAAGCTGTGGGGCGGCAATCTCTGGAACCCGTCGTATTGCATCCTGACTGTTTCTGAAAACACCCGCGCTCAGATTCAGAAATACATAGAGAGCCA
GCATGATAAGGAATAAGGCTTTCGTGGTCAGGCTGTACCCAAATGCGGCTCAGACTGAACTGATTAACCGCACGCTGGGTAGCGCAAGGTTCGTCTACAA
CCACTTCCTTGCCCGTCGCATTGCGGCCTACAAGGAAAGCGGGAAGGGACTGACCTACGGGCAAACGAGTAGCGAACTGACCCTTCTGAAGCAGGCTGAA
GAAACCTCCTGGCTCTCGGAAGTAGATAAGTTTGCTTTGCAGAACTCGCTGAAAAACCTTGAGACCGCGTACAAGAACTTCTTTCGGACTGTGAAGCAGT
CCGGTAAAAAGGTAGGATTCCCACGTTTCAGAAAGAAGCGCACGGGAGAGTCCTACCGGACTCAATTCACCAACAACAACATCCAAATTGGGGAAGGTAG
GCTCAAACTTCCTAAGCTGGGATGGGTGAAAACCAAGGGCCAGCAGGATATTCAAGGGAAGATTCTGAATGTCACTGTGCGCCGTATTCACGAAGGCCAT
TACGAAGCGTCCGTTCTCTGTGAAGTCGAGATTCCCTACCTGCCTGCGGCTCCCAAGTTTGCAGCGGGTGTGGATGTCGGCATCAAGGATTTTGCCATCG
TGACCGATGGCGTGAGGTTTAAGCATGAACAGAATCCGAAATATTACCGCTCCACCCTGAAAAGACTTCGTAAAGCTCAGCAAACCCTGTCCAGACGGAA
GAAGGGCAGCGCACGTTACGGGAAAGCGAAAACCAAGCTGGCTCGGATTCACAAGCGCATTGTCAATAAGCGTCAGGATTTCCTTCACAAGCTCACCACC
TCCCTGGTGCGTGAGTACGAAATCATCGGAACCGAACACCTTAAACCCGACAACATGCGGAAAAATCGCCGCCTTGCACTGAGCATCAGTGATGCGGGCT
GGGGTGAGTTCATCCGGCAGTTGGAATACAAGGCAGCGTGGTACGGGCGACTGGTATCTAAAGTCAGCCCCTACTTTCCATCTAGCCAGTTGTGTCATGA
CTGCGGATTCAAGAATCCCGAAGTGAAGAATCTTGCCGTCCGTACATGGACTTGCCCGAACTGTGGGGAAACCCATGACCGAGACGAGAACGCTGCGCTG
AACATTCGGCGTGAAGCGTTGGTGGCTGCGGGAATCTCAGACACCTTAAACGCTCATGGAGGCTATGTCAGACCTGCTTCGGCGGGCAATGGTCTGCGAA
GTGAGAATCACGCGACTTTAGTCGTGTGAGGTTCAA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
423 bp140 aa94516+No
ORF function : Transposase
Chemistry : Y1

ORF sequence :

MTYVILPLEMKKGRGYVYQLEYHLIWCVKYRHQVLVGEVADGLKDILRDIAAQNGLEVITMEVMPDHVHLLLSATPQQAIPDFVKALKGASARRMFVAYP
QLKEKLWGGNLWNPSYCILTVSENTRAQIQKYIESQHDKE

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1227 bp408 aa5031729+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MIRNKAFVVRLYPNAAQTELINRTLGSARFVYNHFLARRIAAYKESGKGLTYGQTSSELTLLKQAEETSWLSEVDKFALQNSLKNLETAYKNFFRTVKQS
GKKVGFPRFRKKRTGESYRTQFTNNNIQIGEGRLKLPKLGWVKTKGQQDIQGKILNVTVRRIHEGHYEASVLCEVEIPYLPAAPKFAAGVDVGIKDFAIV
TDGVRFKHEQNPKYYRSTLKRLRKAQQTLSRRKKGSARYGKAKTKLARIHKRIVNKRQDFLHKLTTSLVREYEIIGTEHLKPDNMRKNRRLALSISDAGW
GEFIRQLEYKAAWYGRLVSKVSPYFPSSQLCHDCGFKNPEVKNLAVRTWTCPNCGETHDRDENAALNIRREALVAAGISDTLNAHGGYVRPASAGNGLRS
ENHATLVV

 

Blast result :
Comments
There are 8 copies of ISDra2 in Deinococcus radiodurans genome.
References
1] White,O., Eisen,J.A., Heidelberg,J.F., Hickey,E.K., Peterson,J.D., Dodson,R.J., Haft,D.H., Gwinn,M.L., Nelson,W.C., Richardson,D.L., Moffat,K.S., Qin,H., Jiang,L., Pamphile,W., Crosby,M., Shen,M., Vamathevan,J.J., Lam,P., McDonald,L., Utterback,T., Zalewski,C., Makarova,K.S., Aravind,L., Daly,M.J., Minton,K.W., Fleischmann,R.D., Ketchum,K.A., Nelson,K.E., Salzberg,S., Smith,H.O., Venter,J.C. and Fraser,C.M. (1999) GenBank Direct Submission