ISDra2
- Family IS200/IS605
- Group IS605
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AE000513 | ND | Deinococcus radiodurans | Deinococcus radiodurans |
DNA section
IS Length : 1737 bp
Ends
Left end : GCTTGAGGGGCGCACACTCGTGACTTCAGTCATGAGTTAGCCCCTCTCGCCCTGAAAAGGGCGATGAAAAGCGGAAGCCTCTAGCTTTTCCAGATGACAT II struct. : Yes
Right end : TCAGACACCTTAAACGCTCATGGAGGCTATGTCAGACCTGCTTCGGCGGGCAATGGTCTGCGAAGTGAGAATCACGCGACTTTAGTCGTGTGAGGTTCAA II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CTGTTCGTGC | TTGAT | AAAACTAGGA | TCAA |
DNA sequence
GCTTGAGGGGCGCACACTCGTGACTTCAGTCATGAGTTAGCCCCTCTCGCCCTGAAAAGGGCGATGAAAAGCGGAAGCCTCTAGCTTTTCCAGATGACAT
ATGTTATTCTTCCCCTTGAGATGAAGAAAGGCCGGGGTTACGTCTATCAGCTTGAATACCACCTCATCTGGTGCGTGAAATACCGTCATCAGGTGTTGGT
GGGTGAGGTTGCTGATGGACTGAAAGACATCCTGCGTGACATTGCCGCTCAGAACGGGCTGGAAGTCATCACGATGGAAGTCATGCCTGACCACGTTCAC
CTCCTGCTAAGCGCAACCCCACAGCAAGCCATCCCCGACTTCGTGAAGGCGCTGAAAGGCGCTTCCGCACGTCGGATGTTCGTGGCCTACCCGCAGTTGA
AAGAAAAGCTGTGGGGCGGCAATCTCTGGAACCCGTCGTATTGCATCCTGACTGTTTCTGAAAACACCCGCGCTCAGATTCAGAAATACATAGAGAGCCA
GCATGATAAGGAATAAGGCTTTCGTGGTCAGGCTGTACCCAAATGCGGCTCAGACTGAACTGATTAACCGCACGCTGGGTAGCGCAAGGTTCGTCTACAA
CCACTTCCTTGCCCGTCGCATTGCGGCCTACAAGGAAAGCGGGAAGGGACTGACCTACGGGCAAACGAGTAGCGAACTGACCCTTCTGAAGCAGGCTGAA
GAAACCTCCTGGCTCTCGGAAGTAGATAAGTTTGCTTTGCAGAACTCGCTGAAAAACCTTGAGACCGCGTACAAGAACTTCTTTCGGACTGTGAAGCAGT
CCGGTAAAAAGGTAGGATTCCCACGTTTCAGAAAGAAGCGCACGGGAGAGTCCTACCGGACTCAATTCACCAACAACAACATCCAAATTGGGGAAGGTAG
GCTCAAACTTCCTAAGCTGGGATGGGTGAAAACCAAGGGCCAGCAGGATATTCAAGGGAAGATTCTGAATGTCACTGTGCGCCGTATTCACGAAGGCCAT
TACGAAGCGTCCGTTCTCTGTGAAGTCGAGATTCCCTACCTGCCTGCGGCTCCCAAGTTTGCAGCGGGTGTGGATGTCGGCATCAAGGATTTTGCCATCG
TGACCGATGGCGTGAGGTTTAAGCATGAACAGAATCCGAAATATTACCGCTCCACCCTGAAAAGACTTCGTAAAGCTCAGCAAACCCTGTCCAGACGGAA
GAAGGGCAGCGCACGTTACGGGAAAGCGAAAACCAAGCTGGCTCGGATTCACAAGCGCATTGTCAATAAGCGTCAGGATTTCCTTCACAAGCTCACCACC
TCCCTGGTGCGTGAGTACGAAATCATCGGAACCGAACACCTTAAACCCGACAACATGCGGAAAAATCGCCGCCTTGCACTGAGCATCAGTGATGCGGGCT
GGGGTGAGTTCATCCGGCAGTTGGAATACAAGGCAGCGTGGTACGGGCGACTGGTATCTAAAGTCAGCCCCTACTTTCCATCTAGCCAGTTGTGTCATGA
CTGCGGATTCAAGAATCCCGAAGTGAAGAATCTTGCCGTCCGTACATGGACTTGCCCGAACTGTGGGGAAACCCATGACCGAGACGAGAACGCTGCGCTG
AACATTCGGCGTGAAGCGTTGGTGGCTGCGGGAATCTCAGACACCTTAAACGCTCATGGAGGCTATGTCAGACCTGCTTCGGCGGGCAATGGTCTGCGAA
GTGAGAATCACGCGACTTTAGTCGTGTGAGGTTCAA
ATGTTATTCTTCCCCTTGAGATGAAGAAAGGCCGGGGTTACGTCTATCAGCTTGAATACCACCTCATCTGGTGCGTGAAATACCGTCATCAGGTGTTGGT
GGGTGAGGTTGCTGATGGACTGAAAGACATCCTGCGTGACATTGCCGCTCAGAACGGGCTGGAAGTCATCACGATGGAAGTCATGCCTGACCACGTTCAC
CTCCTGCTAAGCGCAACCCCACAGCAAGCCATCCCCGACTTCGTGAAGGCGCTGAAAGGCGCTTCCGCACGTCGGATGTTCGTGGCCTACCCGCAGTTGA
AAGAAAAGCTGTGGGGCGGCAATCTCTGGAACCCGTCGTATTGCATCCTGACTGTTTCTGAAAACACCCGCGCTCAGATTCAGAAATACATAGAGAGCCA
GCATGATAAGGAATAAGGCTTTCGTGGTCAGGCTGTACCCAAATGCGGCTCAGACTGAACTGATTAACCGCACGCTGGGTAGCGCAAGGTTCGTCTACAA
CCACTTCCTTGCCCGTCGCATTGCGGCCTACAAGGAAAGCGGGAAGGGACTGACCTACGGGCAAACGAGTAGCGAACTGACCCTTCTGAAGCAGGCTGAA
GAAACCTCCTGGCTCTCGGAAGTAGATAAGTTTGCTTTGCAGAACTCGCTGAAAAACCTTGAGACCGCGTACAAGAACTTCTTTCGGACTGTGAAGCAGT
CCGGTAAAAAGGTAGGATTCCCACGTTTCAGAAAGAAGCGCACGGGAGAGTCCTACCGGACTCAATTCACCAACAACAACATCCAAATTGGGGAAGGTAG
GCTCAAACTTCCTAAGCTGGGATGGGTGAAAACCAAGGGCCAGCAGGATATTCAAGGGAAGATTCTGAATGTCACTGTGCGCCGTATTCACGAAGGCCAT
TACGAAGCGTCCGTTCTCTGTGAAGTCGAGATTCCCTACCTGCCTGCGGCTCCCAAGTTTGCAGCGGGTGTGGATGTCGGCATCAAGGATTTTGCCATCG
TGACCGATGGCGTGAGGTTTAAGCATGAACAGAATCCGAAATATTACCGCTCCACCCTGAAAAGACTTCGTAAAGCTCAGCAAACCCTGTCCAGACGGAA
GAAGGGCAGCGCACGTTACGGGAAAGCGAAAACCAAGCTGGCTCGGATTCACAAGCGCATTGTCAATAAGCGTCAGGATTTCCTTCACAAGCTCACCACC
TCCCTGGTGCGTGAGTACGAAATCATCGGAACCGAACACCTTAAACCCGACAACATGCGGAAAAATCGCCGCCTTGCACTGAGCATCAGTGATGCGGGCT
GGGGTGAGTTCATCCGGCAGTTGGAATACAAGGCAGCGTGGTACGGGCGACTGGTATCTAAAGTCAGCCCCTACTTTCCATCTAGCCAGTTGTGTCATGA
CTGCGGATTCAAGAATCCCGAAGTGAAGAATCTTGCCGTCCGTACATGGACTTGCCCGAACTGTGGGGAAACCCATGACCGAGACGAGAACGCTGCGCTG
AACATTCGGCGTGAAGCGTTGGTGGCTGCGGGAATCTCAGACACCTTAAACGCTCATGGAGGCTATGTCAGACCTGCTTCGGCGGGCAATGGTCTGCGAA
GTGAGAATCACGCGACTTTAGTCGTGTGAGGTTCAA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
423 bp | 140 aa | 94 | 516 | + | No |
Chemistry : Y1
ORF sequence :
MTYVILPLEMKKGRGYVYQLEYHLIWCVKYRHQVLVGEVADGLKDILRDIAAQNGLEVITMEVMPDHVHLLLSATPQQAIPDFVKALKGASARRMFVAYP
QLKEKLWGGNLWNPSYCILTVSENTRAQIQKYIESQHDKE
QLKEKLWGGNLWNPSYCILTVSENTRAQIQKYIESQHDKE
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1227 bp | 408 aa | 503 | 1729 | + | No |
AG : TnpB
ORF sequence :
MIRNKAFVVRLYPNAAQTELINRTLGSARFVYNHFLARRIAAYKESGKGLTYGQTSSELTLLKQAEETSWLSEVDKFALQNSLKNLETAYKNFFRTVKQS
GKKVGFPRFRKKRTGESYRTQFTNNNIQIGEGRLKLPKLGWVKTKGQQDIQGKILNVTVRRIHEGHYEASVLCEVEIPYLPAAPKFAAGVDVGIKDFAIV
TDGVRFKHEQNPKYYRSTLKRLRKAQQTLSRRKKGSARYGKAKTKLARIHKRIVNKRQDFLHKLTTSLVREYEIIGTEHLKPDNMRKNRRLALSISDAGW
GEFIRQLEYKAAWYGRLVSKVSPYFPSSQLCHDCGFKNPEVKNLAVRTWTCPNCGETHDRDENAALNIRREALVAAGISDTLNAHGGYVRPASAGNGLRS
ENHATLVV
GKKVGFPRFRKKRTGESYRTQFTNNNIQIGEGRLKLPKLGWVKTKGQQDIQGKILNVTVRRIHEGHYEASVLCEVEIPYLPAAPKFAAGVDVGIKDFAIV
TDGVRFKHEQNPKYYRSTLKRLRKAQQTLSRRKKGSARYGKAKTKLARIHKRIVNKRQDFLHKLTTSLVREYEIIGTEHLKPDNMRKNRRLALSISDAGW
GEFIRQLEYKAAWYGRLVSKVSPYFPSSQLCHDCGFKNPEVKNLAVRTWTCPNCGETHDRDENAALNIRREALVAAGISDTLNAHGGYVRPASAGNGLRS
ENHATLVV
Blast result :
Comments
There are 8 copies of ISDra2 in Deinococcus radiodurans genome.
References
1] White,O., Eisen,J.A., Heidelberg,J.F., Hickey,E.K., Peterson,J.D., Dodson,R.J., Haft,D.H., Gwinn,M.L., Nelson,W.C., Richardson,D.L., Moffat,K.S., Qin,H., Jiang,L., Pamphile,W., Crosby,M., Shen,M., Vamathevan,J.J., Lam,P., McDonald,L., Utterback,T., Zalewski,C., Makarova,K.S., Aravind,L., Daly,M.J., Minton,K.W., Fleischmann,R.D., Ketchum,K.A., Nelson,K.E., Salzberg,S., Smith,H.O., Venter,J.C. and Fraser,C.M. (1999) GenBank Direct Submission