ISCla1

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_015949 ND Caldicellulosiruptor lactoaceticus
Caldicellulosiruptor bescii DSM 6725
Caldicellulosiruptor lactoaceticus 6A
Caldicellulosiruptor saccharolyticus DSM 8903
Caldicellulosiruptor kristjanssonii 177R1B
DNA section
IS Length : 1660 bp

Ends


Left end : CATCCATGCTTAGCAAAAGCACAACCATTGATGAAAATAGACTTAAAAAAGGTTGCAAATAATTGACTTTTTGTTAAACTAAAGTTAACAGGGCAAAGGT
Right end : TGGTTAGTTTATTATTGCCTTTTTTATGGTTGAATGATTGAACATATTATATTTTTAATGTTCAAAATCATTTTTGAATGCAATCTATTTTCGTGCTAAC

Insertion site


Left flankDirect repeatRight flankDR Length
TTATTTTATCATTAACTTGTTTTCCAACGTTG0
TTATTTTATCATTAACTTGTTTTCCAACGTTG0
AAATAAGTTCATTAACATTGGTACCTCTATTA0
AAAAATTCTTATTAACAAACAGTGCAAGA3
ACAAATCCACATTAACGCTCTTGAAATATACA0
TTATTTTATCATTAACTGTGCATTCAGAAACT0
ACAAATCCACATTAACCTCTTGAAATATACAA0
TTTTATCATTAACGCAGTTGAAGGTTTAC0
AAATCCACATTAACTATTTGGGATAATA0

DNA sequence

CATCCATGCTTAGCAAAAGCACAACCATTGATGAAAATAGACTTAAAAAAGGTTGCAAATAATTGACTTTTTGTTAAACTAAAGTTAACAGGGCAAAGGT
TGATTTATTGTTGATGGATATAATACCTCGAACATTAACCTAACCTGATTACCTTTGAGCACAGCCAATTGTCGCCCCATATTATCTTAATATGGGAACA
GCACGGGTGCTAAACTTCCTATCTTCTCAGGTAATCATCCCTGTAATAAATTTAACAGGAGTGAATAATATGCAAGATTTACTTGAAATTTGCTGTGGAT
TGGATGTTCACAAAGAAACTATTGTAGCCTGCTTGCTTAAAGGCTCTGTCAACGATGATAAACCACAAAAAACAATAAGGACATTTTCCACTTTACTGCC
AGGGCTTGAAGAATTAAAAGCTTGGCTTGAATCAGAAAACTGCCGGCATGTTGCTATGGAAAGCACGGGAGTATACTGGCAGCCTGTCTATAATATTTTT
GAAAATGCTTTGGACGGCACTATGGTAGTTATAGTTGCCAATGCAAGACATATGAAAAATGTTCCTGGCAAAAAGACTGATATGAAAGATGCAGAATGGA
TTGCAACTCTTTTGAGGGCAGGACTTTTAAATGGAAGCTTTATTCCACTGCAAACAGTAAGAGAATTAAGAGATCTTACAAGATATCGTAAAAGCATAAT
AGAAGAACTATCATCACAGAAAAACCGCATTGAAAAGTATCTTCAAAGCTGTGGTTTTAGACTTTCAAATTTTCTCACAGATATATTTGGTGTATCTGGA
AGAGCAATAATAAACCACATAGCAGAACACGGCAGTATAACCGCAGAAGAAGTTGAAAGTTATGTAAAAACAAGAGCGCGCAATAAATTACAAGAGATAA
AACTGTCAGTAAATGGCAGGATGAATGGGCATCAGAGGAAATTTTTAAGGCTTTTGCTTAAACATTTAGATGAAACATATGAACATCTTTGTGAAATAGA
AGGAGATATTAATTCTGAACTTGAAAAATTCAAAAGGCAGATTGAGCAATTGGATGGTATACCTGGTATAGATAAAACAGCGGCTGCTGCAATAATTGCT
GAAATTGGCATAGATATGAGTAAATTTAAAACTGCAGAACATATTTGTTCATGGGCAGGATTAAGTCCTGGCAATAATGAAAGTGCAGAAAAAAAAAGTC
CACTCGAGTAACAAAGGGTAATACCTACATCAAGAGGATACTTTGTGAAGTTGCATGGAGTTTAACTCGCATAAGGGATTCATACCTTGCTACGTGGTAT
TGGAAAGTAAAACAGCGCCGTGGAGGAAAGAAAGCAATAGTAGCTCTTGCTAGGAAATTACTGGTTATCATCTATAATATGCTTAAGAATGACACTGACT
ATGATGAAAAAGTTTTTTGTGAAGTTCGAAAGAAACAGGAAACGATTCGTGTTAAACGGCTTATCAATGAGGCCAAAAAGTTGGGTTTAGAAGTTATAAT
GCCTCAATCAGTTAAATTTTGACTAAAATTATAAGATTTCCAGCTGATGCCTTTTAGCATTGGTTAGTTTATTATTGCCTTTTTTATGGTTGAATGATTG
AACATATTATATTTTTAATGTTCAAAATCATTTTTGAATGCAATCTATTTTCGTGCTAAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1253 bp417 aa2701522+Yes
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MQDLLEICCGLDVHKETIVACLLKGSVNDDKPQKTIRTFSTLLPGLEELKAWLESENCRHVAMESTGVYWQPVYNIFENALDGTMVVIVANARHMKNVPG
KKTDMKDAEWIATLLRAGLLNGSFIPLQTVRELRDLTRYRKSIIEELSSQKNRIEKYLQSCGFRLSNFLTDIFGVSGRAIINHIAEHGSITAEEVESYVK
TRARNKLQEIKLSVNGRMNGHQRKFLRLLLKHLDETYEHLCEIEGDINSELEKFKRQIEQLDGIPGIDKTAAAAIIAEIGIDMSKFKTAEHICSWAGLSP
GNNESAEKKKSTRVTKGNTYIKRILCEVAWSLTRIRDSYLATWYWKVKQRRGGKKAIVALARKLLVIIYNMLKNDTDYDEKVFCEVRKKQETIRVKRLIN
EAKKLGLEVIMPQSVKF

 

Blast result :
Comments
ISCla1 is 97% aa similar to ISCsa3.
All the copies of the transposase include a potential frameshift (GAAAAAAAAAG) and are reconstructed in silico by possible -1 frameshift. Sequencing error or real frameshift ?
References
1] ISfinder submission (2018)
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Davenport,K., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I., Blumer-Schuette,S.E., Kelly,R.M. and Woyke,T. (2011) Direct GenBank submission.