ISCla1
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_015949 | ND | Caldicellulosiruptor lactoaceticus | Caldicellulosiruptor bescii DSM 6725 Caldicellulosiruptor lactoaceticus 6A Caldicellulosiruptor saccharolyticus DSM 8903 Caldicellulosiruptor kristjanssonii 177R1B |
DNA section
IS Length : 1660 bp
Ends
Left end : CATCCATGCTTAGCAAAAGCACAACCATTGATGAAAATAGACTTAAAAAAGGTTGCAAATAATTGACTTTTTGTTAAACTAAAGTTAACAGGGCAAAGGT
Right end : TGGTTAGTTTATTATTGCCTTTTTTATGGTTGAATGATTGAACATATTATATTTTTAATGTTCAAAATCATTTTTGAATGCAATCTATTTTCGTGCTAAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTATTTTATCATTAAC | TTGTTTTCCAACGTTG | 0 | |
TTATTTTATCATTAAC | TTGTTTTCCAACGTTG | 0 | |
AAATAAGTTCATTAAC | ATTGGTACCTCTATTA | 0 | |
AAAAATTCTTATT | AAC | AAACAGTGCAAGA | 3 |
ACAAATCCACATTAAC | GCTCTTGAAATATACA | 0 | |
TTATTTTATCATTAAC | TGTGCATTCAGAAACT | 0 | |
ACAAATCCACATTAAC | CTCTTGAAATATACAA | 0 | |
TTTTATCATTAAC | GCAGTTGAAGGTTTAC | 0 | |
AAATCCACATTAAC | TATTTGGGATAATA | 0 |
DNA sequence
CATCCATGCTTAGCAAAAGCACAACCATTGATGAAAATAGACTTAAAAAAGGTTGCAAATAATTGACTTTTTGTTAAACTAAAGTTAACAGGGCAAAGGT
TGATTTATTGTTGATGGATATAATACCTCGAACATTAACCTAACCTGATTACCTTTGAGCACAGCCAATTGTCGCCCCATATTATCTTAATATGGGAACA
GCACGGGTGCTAAACTTCCTATCTTCTCAGGTAATCATCCCTGTAATAAATTTAACAGGAGTGAATAATATGCAAGATTTACTTGAAATTTGCTGTGGAT
TGGATGTTCACAAAGAAACTATTGTAGCCTGCTTGCTTAAAGGCTCTGTCAACGATGATAAACCACAAAAAACAATAAGGACATTTTCCACTTTACTGCC
AGGGCTTGAAGAATTAAAAGCTTGGCTTGAATCAGAAAACTGCCGGCATGTTGCTATGGAAAGCACGGGAGTATACTGGCAGCCTGTCTATAATATTTTT
GAAAATGCTTTGGACGGCACTATGGTAGTTATAGTTGCCAATGCAAGACATATGAAAAATGTTCCTGGCAAAAAGACTGATATGAAAGATGCAGAATGGA
TTGCAACTCTTTTGAGGGCAGGACTTTTAAATGGAAGCTTTATTCCACTGCAAACAGTAAGAGAATTAAGAGATCTTACAAGATATCGTAAAAGCATAAT
AGAAGAACTATCATCACAGAAAAACCGCATTGAAAAGTATCTTCAAAGCTGTGGTTTTAGACTTTCAAATTTTCTCACAGATATATTTGGTGTATCTGGA
AGAGCAATAATAAACCACATAGCAGAACACGGCAGTATAACCGCAGAAGAAGTTGAAAGTTATGTAAAAACAAGAGCGCGCAATAAATTACAAGAGATAA
AACTGTCAGTAAATGGCAGGATGAATGGGCATCAGAGGAAATTTTTAAGGCTTTTGCTTAAACATTTAGATGAAACATATGAACATCTTTGTGAAATAGA
AGGAGATATTAATTCTGAACTTGAAAAATTCAAAAGGCAGATTGAGCAATTGGATGGTATACCTGGTATAGATAAAACAGCGGCTGCTGCAATAATTGCT
GAAATTGGCATAGATATGAGTAAATTTAAAACTGCAGAACATATTTGTTCATGGGCAGGATTAAGTCCTGGCAATAATGAAAGTGCAGAAAAAAAAAGTC
CACTCGAGTAACAAAGGGTAATACCTACATCAAGAGGATACTTTGTGAAGTTGCATGGAGTTTAACTCGCATAAGGGATTCATACCTTGCTACGTGGTAT
TGGAAAGTAAAACAGCGCCGTGGAGGAAAGAAAGCAATAGTAGCTCTTGCTAGGAAATTACTGGTTATCATCTATAATATGCTTAAGAATGACACTGACT
ATGATGAAAAAGTTTTTTGTGAAGTTCGAAAGAAACAGGAAACGATTCGTGTTAAACGGCTTATCAATGAGGCCAAAAAGTTGGGTTTAGAAGTTATAAT
GCCTCAATCAGTTAAATTTTGACTAAAATTATAAGATTTCCAGCTGATGCCTTTTAGCATTGGTTAGTTTATTATTGCCTTTTTTATGGTTGAATGATTG
AACATATTATATTTTTAATGTTCAAAATCATTTTTGAATGCAATCTATTTTCGTGCTAAC
TGATTTATTGTTGATGGATATAATACCTCGAACATTAACCTAACCTGATTACCTTTGAGCACAGCCAATTGTCGCCCCATATTATCTTAATATGGGAACA
GCACGGGTGCTAAACTTCCTATCTTCTCAGGTAATCATCCCTGTAATAAATTTAACAGGAGTGAATAATATGCAAGATTTACTTGAAATTTGCTGTGGAT
TGGATGTTCACAAAGAAACTATTGTAGCCTGCTTGCTTAAAGGCTCTGTCAACGATGATAAACCACAAAAAACAATAAGGACATTTTCCACTTTACTGCC
AGGGCTTGAAGAATTAAAAGCTTGGCTTGAATCAGAAAACTGCCGGCATGTTGCTATGGAAAGCACGGGAGTATACTGGCAGCCTGTCTATAATATTTTT
GAAAATGCTTTGGACGGCACTATGGTAGTTATAGTTGCCAATGCAAGACATATGAAAAATGTTCCTGGCAAAAAGACTGATATGAAAGATGCAGAATGGA
TTGCAACTCTTTTGAGGGCAGGACTTTTAAATGGAAGCTTTATTCCACTGCAAACAGTAAGAGAATTAAGAGATCTTACAAGATATCGTAAAAGCATAAT
AGAAGAACTATCATCACAGAAAAACCGCATTGAAAAGTATCTTCAAAGCTGTGGTTTTAGACTTTCAAATTTTCTCACAGATATATTTGGTGTATCTGGA
AGAGCAATAATAAACCACATAGCAGAACACGGCAGTATAACCGCAGAAGAAGTTGAAAGTTATGTAAAAACAAGAGCGCGCAATAAATTACAAGAGATAA
AACTGTCAGTAAATGGCAGGATGAATGGGCATCAGAGGAAATTTTTAAGGCTTTTGCTTAAACATTTAGATGAAACATATGAACATCTTTGTGAAATAGA
AGGAGATATTAATTCTGAACTTGAAAAATTCAAAAGGCAGATTGAGCAATTGGATGGTATACCTGGTATAGATAAAACAGCGGCTGCTGCAATAATTGCT
GAAATTGGCATAGATATGAGTAAATTTAAAACTGCAGAACATATTTGTTCATGGGCAGGATTAAGTCCTGGCAATAATGAAAGTGCAGAAAAAAAAAGTC
CACTCGAGTAACAAAGGGTAATACCTACATCAAGAGGATACTTTGTGAAGTTGCATGGAGTTTAACTCGCATAAGGGATTCATACCTTGCTACGTGGTAT
TGGAAAGTAAAACAGCGCCGTGGAGGAAAGAAAGCAATAGTAGCTCTTGCTAGGAAATTACTGGTTATCATCTATAATATGCTTAAGAATGACACTGACT
ATGATGAAAAAGTTTTTTGTGAAGTTCGAAAGAAACAGGAAACGATTCGTGTTAAACGGCTTATCAATGAGGCCAAAAAGTTGGGTTTAGAAGTTATAAT
GCCTCAATCAGTTAAATTTTGACTAAAATTATAAGATTTCCAGCTGATGCCTTTTAGCATTGGTTAGTTTATTATTGCCTTTTTTATGGTTGAATGATTG
AACATATTATATTTTTAATGTTCAAAATCATTTTTGAATGCAATCTATTTTCGTGCTAAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1253 bp | 417 aa | 270 | 1522 | + | Yes |
Chemistry : DEDD
ORF sequence :
MQDLLEICCGLDVHKETIVACLLKGSVNDDKPQKTIRTFSTLLPGLEELKAWLESENCRHVAMESTGVYWQPVYNIFENALDGTMVVIVANARHMKNVPG
KKTDMKDAEWIATLLRAGLLNGSFIPLQTVRELRDLTRYRKSIIEELSSQKNRIEKYLQSCGFRLSNFLTDIFGVSGRAIINHIAEHGSITAEEVESYVK
TRARNKLQEIKLSVNGRMNGHQRKFLRLLLKHLDETYEHLCEIEGDINSELEKFKRQIEQLDGIPGIDKTAAAAIIAEIGIDMSKFKTAEHICSWAGLSP
GNNESAEKKKSTRVTKGNTYIKRILCEVAWSLTRIRDSYLATWYWKVKQRRGGKKAIVALARKLLVIIYNMLKNDTDYDEKVFCEVRKKQETIRVKRLIN
EAKKLGLEVIMPQSVKF
KKTDMKDAEWIATLLRAGLLNGSFIPLQTVRELRDLTRYRKSIIEELSSQKNRIEKYLQSCGFRLSNFLTDIFGVSGRAIINHIAEHGSITAEEVESYVK
TRARNKLQEIKLSVNGRMNGHQRKFLRLLLKHLDETYEHLCEIEGDINSELEKFKRQIEQLDGIPGIDKTAAAAIIAEIGIDMSKFKTAEHICSWAGLSP
GNNESAEKKKSTRVTKGNTYIKRILCEVAWSLTRIRDSYLATWYWKVKQRRGGKKAIVALARKLLVIIYNMLKNDTDYDEKVFCEVRKKQETIRVKRLIN
EAKKLGLEVIMPQSVKF
Blast result :
Comments
ISCla1 is 97% aa similar to ISCsa3.
All the copies of the transposase include a potential frameshift (GAAAAAAAAAG) and are reconstructed in silico by possible -1 frameshift. Sequencing error or real frameshift ?
All the copies of the transposase include a potential frameshift (GAAAAAAAAAG) and are reconstructed in silico by possible -1 frameshift. Sequencing error or real frameshift ?
References
1] ISfinder submission (2018)
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Davenport,K., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I., Blumer-Schuette,S.E., Kelly,R.M. and Woyke,T. (2011) Direct GenBank submission.
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Davenport,K., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I., Blumer-Schuette,S.E., Kelly,R.M. and Woyke,T. (2011) Direct GenBank submission.