ISCbe5

  • Family ISNCY
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001393 ND Caldicellulosiruptor bescii
Caldicellulosiruptor bescii DSM 6725
DNA section
IS Length : 1087 bp

Ends


IR Length : 9/12

IRL : GAGGTTGTTGAATAAAAGAAATAACCATATAAAGTAAACATAGTAACAAA
IRR : GAGGTTCTTATACTTTACACAAAATTATTTATAGTCTCTTCATAAGCGGA

Insertion site


Left flankDirect repeatRight flankDR Length
TATTTGATAACCTATAACCTTCTTGGTAAGAAT0

DNA sequence

GAGGTTGTTGAATAAAAGAAATAACCATATAAAGTAAACATAGTAACAAATGAAAAAAAACCTTGTATTATAATTTAATTTAAGAGAAAACCACAACAAA
ACACAAGGGGGAAAAGATACATATGAATATTAAAGCACAAAATAAGAAATTTTTAAAGCTACTTTTTGTAGTGAAAAAGGTTGCTGAAGCTCTGTCAAGG
AGAATAAAGCACAATAGAAGAGGACGCTCAAGGAAATTTAATTTGTTTCAAATAATAGCTTGTCTGGTTTACAAAGTTAAGAAGGGGATAAAAAGTTTCA
GAGAATTAGAATATCGAATAAATCAAGACATAGAGTTTAAAAGAGCAATAGGTATAGAAGAAAGTCCAAACTATTCATATTTTGCAAAGTTGTTAAGAAA
AATAGAAGAAAAATACATGCAAGATATAAGAGAGATACTAATAGCTGAAATAGAACCTGATATTAGTATAGCGATAGTAGATTCTACGCCGCTGAGAAGT
GCCAAAAATGATTCAGAAGCAAAAATAGATATACATATTACAATAGGATTTTTCAGGGGATACAAATTACATCTTTTGTGTGCAGGTAAAGAAGAAGTAA
TACCACTTTTCTGGATTTTAACAGGGGCAAATGAACATGACTCAAGACAAGAAGAGCTTTTGTATAGGGCATGGGGCTTTGGCTGTGAGATTGTATTAGC
AGATGCAGGATACGACTGTAGCAGATGGTTTAATATAGCAAATGAGCTTAAAGTTAAGTTTGTTGCTGGGATAAACAAAAGAAATATGAAAGACAAAAAC
AATGTGAGCAATAGTTTTAGAAGCAAGAATATAAGATTTTTAGAAACTGAAGAAGGTAAGAAGCTATACAGGCACAGAACAAAGATTGAAAGGTTATTTA
GCAAATTAAAAGGTGAATATAATCTTGAGAATGTGAGGCTCAAGGGATTTAGAAATTATAAAAGGTATATTGATTGGATACTAATTACTTTTCTATTTGA
ACAACCTCTCAGAAAGTTAGAAGGCAAGAAGTTTTCTTCCGCTTATGAAGAGACTATAAATAATTTTGTGTAAAGTATAAGAACCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
951 bp316 aa1231073+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MNIKAQNKKFLKLLFVVKKVAEALSRRIKHNRRGRSRKFNLFQIIACLVYKVKKGIKSFRELEYRINQDIEFKRAIGIEESPNYSYFAKLLRKIEEKYMQ
DIREILIAEIEPDISIAIVDSTPLRSAKNDSEAKIDIHITIGFFRGYKLHLLCAGKEEVIPLFWILTGANEHDSRQEELLYRAWGFGCEIVLADAGYDCS
RWFNIANELKVKFVAGINKRNMKDKNNVSNSFRSKNIRFLETEEGKKLYRHRTKIERLFSKLKGEYNLENVRLKGFRNYKRYIDWILITFLFEQPLRKLE
GKKFSSAYEETINNFV

 

Blast result :
Comments
ISCbe5 is 76% aa similar to ISCsa7.
References
1] ISfinder submission (2018)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Meincke,L., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ovchinnikova,G., Kataeva,I. and Adams,M.W.W. (2009) Direct GenBank submission.