ISCbe5
- Family ISNCY
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001393 | ND | Caldicellulosiruptor bescii | Caldicellulosiruptor bescii DSM 6725 |
DNA section
IS Length : 1087 bp
Ends
IR Length : 9/12
IRL : GAGGTTGTTGAATAAAAGAAATAACCATATAAAGTAAACATAGTAACAAA
IRR : GAGGTTCTTATACTTTACACAAAATTATTTATAGTCTCTTCATAAGCGGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TATTTGATAACCTATAAC | CTTCTTGGTAAGAAT | 0 |
DNA sequence
GAGGTTGTTGAATAAAAGAAATAACCATATAAAGTAAACATAGTAACAAATGAAAAAAAACCTTGTATTATAATTTAATTTAAGAGAAAACCACAACAAA
ACACAAGGGGGAAAAGATACATATGAATATTAAAGCACAAAATAAGAAATTTTTAAAGCTACTTTTTGTAGTGAAAAAGGTTGCTGAAGCTCTGTCAAGG
AGAATAAAGCACAATAGAAGAGGACGCTCAAGGAAATTTAATTTGTTTCAAATAATAGCTTGTCTGGTTTACAAAGTTAAGAAGGGGATAAAAAGTTTCA
GAGAATTAGAATATCGAATAAATCAAGACATAGAGTTTAAAAGAGCAATAGGTATAGAAGAAAGTCCAAACTATTCATATTTTGCAAAGTTGTTAAGAAA
AATAGAAGAAAAATACATGCAAGATATAAGAGAGATACTAATAGCTGAAATAGAACCTGATATTAGTATAGCGATAGTAGATTCTACGCCGCTGAGAAGT
GCCAAAAATGATTCAGAAGCAAAAATAGATATACATATTACAATAGGATTTTTCAGGGGATACAAATTACATCTTTTGTGTGCAGGTAAAGAAGAAGTAA
TACCACTTTTCTGGATTTTAACAGGGGCAAATGAACATGACTCAAGACAAGAAGAGCTTTTGTATAGGGCATGGGGCTTTGGCTGTGAGATTGTATTAGC
AGATGCAGGATACGACTGTAGCAGATGGTTTAATATAGCAAATGAGCTTAAAGTTAAGTTTGTTGCTGGGATAAACAAAAGAAATATGAAAGACAAAAAC
AATGTGAGCAATAGTTTTAGAAGCAAGAATATAAGATTTTTAGAAACTGAAGAAGGTAAGAAGCTATACAGGCACAGAACAAAGATTGAAAGGTTATTTA
GCAAATTAAAAGGTGAATATAATCTTGAGAATGTGAGGCTCAAGGGATTTAGAAATTATAAAAGGTATATTGATTGGATACTAATTACTTTTCTATTTGA
ACAACCTCTCAGAAAGTTAGAAGGCAAGAAGTTTTCTTCCGCTTATGAAGAGACTATAAATAATTTTGTGTAAAGTATAAGAACCTC
ACACAAGGGGGAAAAGATACATATGAATATTAAAGCACAAAATAAGAAATTTTTAAAGCTACTTTTTGTAGTGAAAAAGGTTGCTGAAGCTCTGTCAAGG
AGAATAAAGCACAATAGAAGAGGACGCTCAAGGAAATTTAATTTGTTTCAAATAATAGCTTGTCTGGTTTACAAAGTTAAGAAGGGGATAAAAAGTTTCA
GAGAATTAGAATATCGAATAAATCAAGACATAGAGTTTAAAAGAGCAATAGGTATAGAAGAAAGTCCAAACTATTCATATTTTGCAAAGTTGTTAAGAAA
AATAGAAGAAAAATACATGCAAGATATAAGAGAGATACTAATAGCTGAAATAGAACCTGATATTAGTATAGCGATAGTAGATTCTACGCCGCTGAGAAGT
GCCAAAAATGATTCAGAAGCAAAAATAGATATACATATTACAATAGGATTTTTCAGGGGATACAAATTACATCTTTTGTGTGCAGGTAAAGAAGAAGTAA
TACCACTTTTCTGGATTTTAACAGGGGCAAATGAACATGACTCAAGACAAGAAGAGCTTTTGTATAGGGCATGGGGCTTTGGCTGTGAGATTGTATTAGC
AGATGCAGGATACGACTGTAGCAGATGGTTTAATATAGCAAATGAGCTTAAAGTTAAGTTTGTTGCTGGGATAAACAAAAGAAATATGAAAGACAAAAAC
AATGTGAGCAATAGTTTTAGAAGCAAGAATATAAGATTTTTAGAAACTGAAGAAGGTAAGAAGCTATACAGGCACAGAACAAAGATTGAAAGGTTATTTA
GCAAATTAAAAGGTGAATATAATCTTGAGAATGTGAGGCTCAAGGGATTTAGAAATTATAAAAGGTATATTGATTGGATACTAATTACTTTTCTATTTGA
ACAACCTCTCAGAAAGTTAGAAGGCAAGAAGTTTTCTTCCGCTTATGAAGAGACTATAAATAATTTTGTGTAAAGTATAAGAACCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
951 bp | 316 aa | 123 | 1073 | + | No |
Chemistry : Unknow
ORF sequence :
MNIKAQNKKFLKLLFVVKKVAEALSRRIKHNRRGRSRKFNLFQIIACLVYKVKKGIKSFRELEYRINQDIEFKRAIGIEESPNYSYFAKLLRKIEEKYMQ
DIREILIAEIEPDISIAIVDSTPLRSAKNDSEAKIDIHITIGFFRGYKLHLLCAGKEEVIPLFWILTGANEHDSRQEELLYRAWGFGCEIVLADAGYDCS
RWFNIANELKVKFVAGINKRNMKDKNNVSNSFRSKNIRFLETEEGKKLYRHRTKIERLFSKLKGEYNLENVRLKGFRNYKRYIDWILITFLFEQPLRKLE
GKKFSSAYEETINNFV
DIREILIAEIEPDISIAIVDSTPLRSAKNDSEAKIDIHITIGFFRGYKLHLLCAGKEEVIPLFWILTGANEHDSRQEELLYRAWGFGCEIVLADAGYDCS
RWFNIANELKVKFVAGINKRNMKDKNNVSNSFRSKNIRFLETEEGKKLYRHRTKIERLFSKLKGEYNLENVRLKGFRNYKRYIDWILITFLFEQPLRKLE
GKKFSSAYEETINNFV
Blast result :
Comments
ISCbe5 is 76% aa similar to ISCsa7.
References
1] ISfinder submission (2018)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Meincke,L., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ovchinnikova,G., Kataeva,I. and Adams,M.W.W. (2009) Direct GenBank submission.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Meincke,L., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ovchinnikova,G., Kataeva,I. and Adams,M.W.W. (2009) Direct GenBank submission.