ISBusp6
- Family IS1634
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| JH603161 | ND | Burkholderia sp. | Burkholderia sp. Ch1-1 |
DNA section
IS Length : 1948 bp
Ends
IR Length : 59/63
IRL : CTTACATTCCGCAGGTCGAGGACACAATTTGGCGTGAATTTCGTTGCCAG
IRR : CTTACATTCCGCACGTCGAGGACACAATTTGGCGCGAATTTCGTCGCTAG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TCAGCGAGGCGACTG | GCTTGA | CGCTTATTTGGAGGTA | 6 |
DNA sequence
CTTACATTCCGCAGGTCGAGGACACAATTTGGCGTGAATTTCGTTGCCAGTCGGGCGGGCGAATGCCCATCCAGGGCCGCCGGGTAGCCTGAGCAACTGG
CGCTGCAAACCCGTGACTGGTACGAGACAGCATCAACTGGCCTTGAACATTTAGGAGTCCTCCTATAATATAGCGGAAGAATGTCCGGTCCACAAGACCG
TTCTCCGCCCAAGGCTCGCTTCATCCTGCACAGCGAGCGACTGGGACCTTTACCCCTCGTCAATCAATTCATCGATCGCATCGGCCTGGAGTCCTTGCTC
GATCGCCACGTTCCATCAGACGCGCGCTGTGCGGTGCCTCACGCCCGGGCCCTTGGCGTGCTGCTGCGCTCGATCATCGTCGAGCGCGAGCCGATTTACC
GCCAGCAGGAGACGGTCCACGGCTTTGCGAGCGGGATGTTTGGCATTGGTTCTGAGGAGATGAATCACCTCAGCGATGATCGGCTTGGCCGTGCGCTGGA
TCACCTGTTTGACGCCGACCGCGCGGCCTTGCTCACCGAGGTGGCACTCGCCGTTGCAGAGCGCTTCGGCGTGAACTTCGACGAGTGTCACAACGACAGT
ACGACGATCAGCTTCCATGGCAGCTATCGTGGCGCCTCAGGCCGCAAGATCCGCGGCCGCACGGCACCGGTGATCACCTATGGCCATTCGAAGGCCAAGC
GGCCCGATATGAAGCAGCTGCTGTTCATCCTCACCATGACCGCCGACGGCAACATTCCCGTCGCGTTTCGCTGTACCGACGGCAATGCGAGTGACTCGCG
CACCCACATCGAGACCTGGAATACATTGCGCGCCGTGGCGGGGCGCAGCGACTTTCTTTACGTTGCCGATTCAAAACTTTGTTCCCGTGAGAACATGGAC
CATATCGATCGCGCGGGCGGACGGTTCGTCACCGTGTTGCCCCGCAATCGCCTGGAAGACGCCGAGTTCCGCCAGTGGATCCAGACCAACACCCCTGACT
GGACCTGTGTGTGGGACCGGCCCAATGCGCGCCACAGTGACGGGCCGCGCGACTGCTGGTATGTCTTTCGTGCGCCGCTGCTGTCGGCCGAAGCCTGGCC
CGTAGTATGGGTGTGGAGTCCGTTGCTGACGCTGCGCCAGGAGGCCCGGCGACGCAGGAACATCGCCGCGGCCATTGAAGAGTTCCAGCAGTTACGCGCG
CGGCTGGCAGGCTCGAAGACGCGGCTGCGTGGCGCTGCCGAGATTGACCTGCAGATCAAGGCGATTCTCGAGAAGCACCACGTCGCCCGCTATCTGAAGG
TCCGGCGTACCGTGCGCGAAGAACACGAGTACCGGCAGACGCGGCGCGGTCGCCCGGGACCCGAGACTGCTTACCGCAAGATCACCAGGCGGCGCTTTGA
CATCGAGTGGACGACCGACGAACAGACCATCGCTTACGATCACCGCAGCGATGGAATGTATCCTCTGGTCACAAACGATCGCAGTCTGTCACCGGCCCAG
GTGCTGGAAGCCCACAAGGGTCAGCCGATGATCGAGAAGCGCTTCGAACAGGTCAAGACCGTACATGAGATCGCACCGGTGTTCCTGAAGGATGAGGGCC
GCATCGAGGCTTTCTTCACGCTGTACTTCCTCGCTCTGCTCGTGCAGGCGCTCATTGAACGCGAACTGCGCCTTGCCATGAAGCGCGAGAATATCGACGA
ACTGCCTCTTTATCCCGAGCAGCGTCAGTGCGCACGCCCCACGACCGAACAGATCCTGCGCCTGTTCAGCCTCGCCGAACGTCACCGGCTGATCGATGGT
GCACACACTGTGCAGGTCTTCGACGTTCCCCTCACGGAATTGCAGCGTCAGCTGCTCAGGCTACTCGGCGTCCCGGAAGACGTCTTTCGCCCGCCGGACT
AGCGACGAAATTCGCGCCAAATTGTGTCCTCGACGTGCGGAATGTAAG
CGCTGCAAACCCGTGACTGGTACGAGACAGCATCAACTGGCCTTGAACATTTAGGAGTCCTCCTATAATATAGCGGAAGAATGTCCGGTCCACAAGACCG
TTCTCCGCCCAAGGCTCGCTTCATCCTGCACAGCGAGCGACTGGGACCTTTACCCCTCGTCAATCAATTCATCGATCGCATCGGCCTGGAGTCCTTGCTC
GATCGCCACGTTCCATCAGACGCGCGCTGTGCGGTGCCTCACGCCCGGGCCCTTGGCGTGCTGCTGCGCTCGATCATCGTCGAGCGCGAGCCGATTTACC
GCCAGCAGGAGACGGTCCACGGCTTTGCGAGCGGGATGTTTGGCATTGGTTCTGAGGAGATGAATCACCTCAGCGATGATCGGCTTGGCCGTGCGCTGGA
TCACCTGTTTGACGCCGACCGCGCGGCCTTGCTCACCGAGGTGGCACTCGCCGTTGCAGAGCGCTTCGGCGTGAACTTCGACGAGTGTCACAACGACAGT
ACGACGATCAGCTTCCATGGCAGCTATCGTGGCGCCTCAGGCCGCAAGATCCGCGGCCGCACGGCACCGGTGATCACCTATGGCCATTCGAAGGCCAAGC
GGCCCGATATGAAGCAGCTGCTGTTCATCCTCACCATGACCGCCGACGGCAACATTCCCGTCGCGTTTCGCTGTACCGACGGCAATGCGAGTGACTCGCG
CACCCACATCGAGACCTGGAATACATTGCGCGCCGTGGCGGGGCGCAGCGACTTTCTTTACGTTGCCGATTCAAAACTTTGTTCCCGTGAGAACATGGAC
CATATCGATCGCGCGGGCGGACGGTTCGTCACCGTGTTGCCCCGCAATCGCCTGGAAGACGCCGAGTTCCGCCAGTGGATCCAGACCAACACCCCTGACT
GGACCTGTGTGTGGGACCGGCCCAATGCGCGCCACAGTGACGGGCCGCGCGACTGCTGGTATGTCTTTCGTGCGCCGCTGCTGTCGGCCGAAGCCTGGCC
CGTAGTATGGGTGTGGAGTCCGTTGCTGACGCTGCGCCAGGAGGCCCGGCGACGCAGGAACATCGCCGCGGCCATTGAAGAGTTCCAGCAGTTACGCGCG
CGGCTGGCAGGCTCGAAGACGCGGCTGCGTGGCGCTGCCGAGATTGACCTGCAGATCAAGGCGATTCTCGAGAAGCACCACGTCGCCCGCTATCTGAAGG
TCCGGCGTACCGTGCGCGAAGAACACGAGTACCGGCAGACGCGGCGCGGTCGCCCGGGACCCGAGACTGCTTACCGCAAGATCACCAGGCGGCGCTTTGA
CATCGAGTGGACGACCGACGAACAGACCATCGCTTACGATCACCGCAGCGATGGAATGTATCCTCTGGTCACAAACGATCGCAGTCTGTCACCGGCCCAG
GTGCTGGAAGCCCACAAGGGTCAGCCGATGATCGAGAAGCGCTTCGAACAGGTCAAGACCGTACATGAGATCGCACCGGTGTTCCTGAAGGATGAGGGCC
GCATCGAGGCTTTCTTCACGCTGTACTTCCTCGCTCTGCTCGTGCAGGCGCTCATTGAACGCGAACTGCGCCTTGCCATGAAGCGCGAGAATATCGACGA
ACTGCCTCTTTATCCCGAGCAGCGTCAGTGCGCACGCCCCACGACCGAACAGATCCTGCGCCTGTTCAGCCTCGCCGAACGTCACCGGCTGATCGATGGT
GCACACACTGTGCAGGTCTTCGACGTTCCCCTCACGGAATTGCAGCGTCAGCTGCTCAGGCTACTCGGCGTCCCGGAAGACGTCTTTCGCCCGCCGGACT
AGCGACGAAATTCGCGCCAAATTGTGTCCTCGACGTGCGGAATGTAAG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1722 bp | 573 aa | 181 | 1902 | + | No |
Chemistry : DDE
ORF sequence :
MSGPQDRSPPKARFILHSERLGPLPLVNQFIDRIGLESLLDRHVPSDARCAVPHARALGVLLRSIIVEREPIYRQQETVHGFASGMFGIGSEEMNHLSDD
RLGRALDHLFDADRAALLTEVALAVAERFGVNFDECHNDSTTISFHGSYRGASGRKIRGRTAPVITYGHSKAKRPDMKQLLFILTMTADGNIPVAFRCTD
GNASDSRTHIETWNTLRAVAGRSDFLYVADSKLCSRENMDHIDRAGGRFVTVLPRNRLEDAEFRQWIQTNTPDWTCVWDRPNARHSDGPRDCWYVFRAPL
LSAEAWPVVWVWSPLLTLRQEARRRRNIAAAIEEFQQLRARLAGSKTRLRGAAEIDLQIKAILEKHHVARYLKVRRTVREEHEYRQTRRGRPGPETAYRK
ITRRRFDIEWTTDEQTIAYDHRSDGMYPLVTNDRSLSPAQVLEAHKGQPMIEKRFEQVKTVHEIAPVFLKDEGRIEAFFTLYFLALLVQALIERELRLAM
KRENIDELPLYPEQRQCARPTTEQILRLFSLAERHRLIDGAHTVQVFDVPLTELQRQLLRLLGVPEDVFRPPD
RLGRALDHLFDADRAALLTEVALAVAERFGVNFDECHNDSTTISFHGSYRGASGRKIRGRTAPVITYGHSKAKRPDMKQLLFILTMTADGNIPVAFRCTD
GNASDSRTHIETWNTLRAVAGRSDFLYVADSKLCSRENMDHIDRAGGRFVTVLPRNRLEDAEFRQWIQTNTPDWTCVWDRPNARHSDGPRDCWYVFRAPL
LSAEAWPVVWVWSPLLTLRQEARRRRNIAAAIEEFQQLRARLAGSKTRLRGAAEIDLQIKAILEKHHVARYLKVRRTVREEHEYRQTRRGRPGPETAYRK
ITRRRFDIEWTTDEQTIAYDHRSDGMYPLVTNDRSLSPAQVLEAHKGQPMIEKRFEQVKTVHEIAPVFLKDEGRIEAFFTLYFLALLVQALIERELRLAM
KRENIDELPLYPEQRQCARPTTEQILRLFSLAERHRLIDGAHTVQVFDVPLTELQRQLLRLLGVPEDVFRPPD
Blast result :
Comments
ISbusp6 is 42% aa similar to ISMae10.
References
1] ISfinder annotation (2018)
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Bradfield,C., Sheety,A., Cheng,S., Chain,P., Denef,V., Hickey,W. and Woyke,T. (2011) Direct GenBank submission.
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Bradfield,C., Sheety,A., Cheng,S., Chain,P., Denef,V., Hickey,W. and Woyke,T. (2011) Direct GenBank submission.