ISBvi2

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FMVZ01000022 ND Burkholderia vietnamiensis
Burkholderia vietnamiensis WPB
DNA section
IS Length : 1186 bp

Ends


IR Length : 13/16

IRL : GGCAAAGCTGATCAAGTCCACCGCAGAACTGCTCCGAGCGTTATAGATCG
IRR : GGCTACGCTGAACAAGCAGCTGAATTGGCGGCGTGTTGGCGATGTGGAGG

Insertion site


Left flankDirect repeatRight flankDR Length
ATCCAAAGGTTTAGNNNN4

DNA sequence

GGCAAAGCTGATCAAGTCCACCGCAGAACTGCTCCGAGCGTTATAGATCGGGGTGGATAAGGAAGGCAGAACAGGATGAAGCAGCAGACGTTGGCGATGG
CAGCTGATGAAGGTGCGGGTTTCGAGACACACCGCAAGCGAACACGGCGCGATGAGTTTCTCGATACGATGAATGCAATTCTGCCGTGGACTGAGTTGTG
CGCGGTGGTCGAGCCGCATTACCCGAAGCGCGGCAATGGCCGCCCGCCGATTGGTCTGGAGCGCATGCTGCGAATCCATTTCATCCAGCACTGGTTCAAC
CTGGCCGATTTCGCGTGTGAAGAGGCGCTTTACGATAGTGCCAGCCTGCGTCGCTTTGCGAGAATTGATCTGGGCTGCGAGGCGGCACCAGATGCCACCA
CGCTGCTCAAATTTCGTCGTCTTCTCGAAACCCACAAACTGGGCGAGAAGCTGTTTGCCGAAGTCGGCCGGGTGCTGCAGGCGAGCGGCATGAAACTCAA
GAGCGGCACGATCGTGGACGCCACGATCATCGGTGCGCCGAGTTCGACGAAGAATGAGCAGAAGTCGCGCGACCCCGAGATGCATCAGACGCGCAAAGGC
AAGCAATGGTACTTTGGCGCGAAGCTGCATATCGGCGTGGACAGCCAGAGCGGCCTGGCGCACAGCGCAGTGCTCACGCCGGCCAACGTGCATGACAAGC
ATCCGCTGCCACAATTGCTGCACGGACAGGAGCGGCGGGTCTACGGTGACAGCGCATACGCCAGCCAGAAAGCGCTGATCCACAGCAAAGCGCCGAAGGC
GCGCGACTTCACGAATCAGCGCACCCGTCGCGCGGGTGAAGTCGATGAGGTGCAGCGCGGCAAGAACCGCCACAAGTCGAGGATCCGTGCACGCGTGGAG
CATGTGTTCGCGGTGGTCAAACGACTGTGGGGCTTCACGAAGGTGCGCTACCGCGGGTTGGCGAAGAATGCGAACCGGGCCTTCGTCGCTTTGGCGCTCG
CCAACGTGTACCTGTCGCGCACGCGATTGATGGCGCAGTTGCGCCCGTAATGGGCGAAAGGCGGGCAAAACGCCCGCGTGCAATGCCCGCAAGGGCCAAA
AGCAAAGGAGTGACGGTCGGCTTCACGACCTGAACACCTCCACATCGCCAACACGCCGCCAATTCAGCTGCTTGTTCAGCGTAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
975 bp324 aa761050+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKQQTLAMAADEGAGFETHRKRTRRDEFLDTMNAILPWTELCAVVEPHYPKRGNGRPPIGLERMLRIHFIQHWFNLADFACEEALYDSASLRRFARIDLG
CEAAPDATTLLKFRRLLETHKLGEKLFAEVGRVLQASGMKLKSGTIVDATIIGAPSSTKNEQKSRDPEMHQTRKGKQWYFGAKLHIGVDSQSGLAHSAVL
TPANVHDKHPLPQLLHGQERRVYGDSAYASQKALIHSKAPKARDFTNQRTRRAGEVDEVQRGKNRHKSRIRARVEHVFAVVKRLWGFTKVRYRGLAKNAN
RAFVALALANVYLSRTRLMAQLRP

 

Blast result :
Comments
ISBvi2 is 89% aa similar to IS881.
References
1] ISfinder submission (2018)
2] Varghese,N. and Submissions,S. (2016) Diret GenBank submission.