ISBvi2
- Family IS5
- Group IS5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
FMVZ01000022 | ND | Burkholderia vietnamiensis | Burkholderia vietnamiensis WPB |
DNA section
IS Length : 1186 bp
Ends
IR Length : 13/16
IRL : GGCAAAGCTGATCAAGTCCACCGCAGAACTGCTCCGAGCGTTATAGATCG
IRR : GGCTACGCTGAACAAGCAGCTGAATTGGCGGCGTGTTGGCGATGTGGAGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATCCAAAGGT | TTAG | NNNN | 4 |
DNA sequence
GGCAAAGCTGATCAAGTCCACCGCAGAACTGCTCCGAGCGTTATAGATCGGGGTGGATAAGGAAGGCAGAACAGGATGAAGCAGCAGACGTTGGCGATGG
CAGCTGATGAAGGTGCGGGTTTCGAGACACACCGCAAGCGAACACGGCGCGATGAGTTTCTCGATACGATGAATGCAATTCTGCCGTGGACTGAGTTGTG
CGCGGTGGTCGAGCCGCATTACCCGAAGCGCGGCAATGGCCGCCCGCCGATTGGTCTGGAGCGCATGCTGCGAATCCATTTCATCCAGCACTGGTTCAAC
CTGGCCGATTTCGCGTGTGAAGAGGCGCTTTACGATAGTGCCAGCCTGCGTCGCTTTGCGAGAATTGATCTGGGCTGCGAGGCGGCACCAGATGCCACCA
CGCTGCTCAAATTTCGTCGTCTTCTCGAAACCCACAAACTGGGCGAGAAGCTGTTTGCCGAAGTCGGCCGGGTGCTGCAGGCGAGCGGCATGAAACTCAA
GAGCGGCACGATCGTGGACGCCACGATCATCGGTGCGCCGAGTTCGACGAAGAATGAGCAGAAGTCGCGCGACCCCGAGATGCATCAGACGCGCAAAGGC
AAGCAATGGTACTTTGGCGCGAAGCTGCATATCGGCGTGGACAGCCAGAGCGGCCTGGCGCACAGCGCAGTGCTCACGCCGGCCAACGTGCATGACAAGC
ATCCGCTGCCACAATTGCTGCACGGACAGGAGCGGCGGGTCTACGGTGACAGCGCATACGCCAGCCAGAAAGCGCTGATCCACAGCAAAGCGCCGAAGGC
GCGCGACTTCACGAATCAGCGCACCCGTCGCGCGGGTGAAGTCGATGAGGTGCAGCGCGGCAAGAACCGCCACAAGTCGAGGATCCGTGCACGCGTGGAG
CATGTGTTCGCGGTGGTCAAACGACTGTGGGGCTTCACGAAGGTGCGCTACCGCGGGTTGGCGAAGAATGCGAACCGGGCCTTCGTCGCTTTGGCGCTCG
CCAACGTGTACCTGTCGCGCACGCGATTGATGGCGCAGTTGCGCCCGTAATGGGCGAAAGGCGGGCAAAACGCCCGCGTGCAATGCCCGCAAGGGCCAAA
AGCAAAGGAGTGACGGTCGGCTTCACGACCTGAACACCTCCACATCGCCAACACGCCGCCAATTCAGCTGCTTGTTCAGCGTAGCC
CAGCTGATGAAGGTGCGGGTTTCGAGACACACCGCAAGCGAACACGGCGCGATGAGTTTCTCGATACGATGAATGCAATTCTGCCGTGGACTGAGTTGTG
CGCGGTGGTCGAGCCGCATTACCCGAAGCGCGGCAATGGCCGCCCGCCGATTGGTCTGGAGCGCATGCTGCGAATCCATTTCATCCAGCACTGGTTCAAC
CTGGCCGATTTCGCGTGTGAAGAGGCGCTTTACGATAGTGCCAGCCTGCGTCGCTTTGCGAGAATTGATCTGGGCTGCGAGGCGGCACCAGATGCCACCA
CGCTGCTCAAATTTCGTCGTCTTCTCGAAACCCACAAACTGGGCGAGAAGCTGTTTGCCGAAGTCGGCCGGGTGCTGCAGGCGAGCGGCATGAAACTCAA
GAGCGGCACGATCGTGGACGCCACGATCATCGGTGCGCCGAGTTCGACGAAGAATGAGCAGAAGTCGCGCGACCCCGAGATGCATCAGACGCGCAAAGGC
AAGCAATGGTACTTTGGCGCGAAGCTGCATATCGGCGTGGACAGCCAGAGCGGCCTGGCGCACAGCGCAGTGCTCACGCCGGCCAACGTGCATGACAAGC
ATCCGCTGCCACAATTGCTGCACGGACAGGAGCGGCGGGTCTACGGTGACAGCGCATACGCCAGCCAGAAAGCGCTGATCCACAGCAAAGCGCCGAAGGC
GCGCGACTTCACGAATCAGCGCACCCGTCGCGCGGGTGAAGTCGATGAGGTGCAGCGCGGCAAGAACCGCCACAAGTCGAGGATCCGTGCACGCGTGGAG
CATGTGTTCGCGGTGGTCAAACGACTGTGGGGCTTCACGAAGGTGCGCTACCGCGGGTTGGCGAAGAATGCGAACCGGGCCTTCGTCGCTTTGGCGCTCG
CCAACGTGTACCTGTCGCGCACGCGATTGATGGCGCAGTTGCGCCCGTAATGGGCGAAAGGCGGGCAAAACGCCCGCGTGCAATGCCCGCAAGGGCCAAA
AGCAAAGGAGTGACGGTCGGCTTCACGACCTGAACACCTCCACATCGCCAACACGCCGCCAATTCAGCTGCTTGTTCAGCGTAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
975 bp | 324 aa | 76 | 1050 | + | No |
Chemistry : DDE
ORF sequence :
MKQQTLAMAADEGAGFETHRKRTRRDEFLDTMNAILPWTELCAVVEPHYPKRGNGRPPIGLERMLRIHFIQHWFNLADFACEEALYDSASLRRFARIDLG
CEAAPDATTLLKFRRLLETHKLGEKLFAEVGRVLQASGMKLKSGTIVDATIIGAPSSTKNEQKSRDPEMHQTRKGKQWYFGAKLHIGVDSQSGLAHSAVL
TPANVHDKHPLPQLLHGQERRVYGDSAYASQKALIHSKAPKARDFTNQRTRRAGEVDEVQRGKNRHKSRIRARVEHVFAVVKRLWGFTKVRYRGLAKNAN
RAFVALALANVYLSRTRLMAQLRP
CEAAPDATTLLKFRRLLETHKLGEKLFAEVGRVLQASGMKLKSGTIVDATIIGAPSSTKNEQKSRDPEMHQTRKGKQWYFGAKLHIGVDSQSGLAHSAVL
TPANVHDKHPLPQLLHGQERRVYGDSAYASQKALIHSKAPKARDFTNQRTRRAGEVDEVQRGKNRHKSRIRARVEHVFAVVKRLWGFTKVRYRGLAKNAN
RAFVALALANVYLSRTRLMAQLRP
Blast result :
Comments
ISBvi2 is 89% aa similar to IS881.
References
1] ISfinder submission (2018)
2] Varghese,N. and Submissions,S. (2016) Diret GenBank submission.
2] Varghese,N. and Submissions,S. (2016) Diret GenBank submission.