ISDra1

  • Family IS4
  • Group IS10
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AE000513 ND Deinococcus radiodurans
Deinococcus radiodurans
Deinococcus radiodurans plasmid pMP1
Deinococcus radiodurans plasmid pCP1
DNA section
IS Length : 1207 bp

Ends


IR Length : 23/27

IRL : CTCAGTAGGTGACAACTTCGGTTCGACGTTGTCCCAGACGGCAAAAACCA
IRR : CTCAGTAGGTGACAACTTCACTTTCAGCCGCTCCTGGCGGGCAAAAAGCC

Insertion site


Left flankDirect repeatRight flankDR Length
TCCGCAAGTAAGCCCACTCATACCCGAAT9
CGTTTCACTTCGGCCTGATACTCGGTGAT9

DNA sequence

CTCAGTAGGTGACAACTTCGGTTCGACGTTGTCCCAGACGGCAAAAACCAACAGTCGGCCCCATCAAGCTTGATGGGGCCGACTGTTCGCGGTTTCCTGA
GAGTGTGAAATCAACAGAGGGGAGCTGCCCAGCAGGCTACCGCACTCACCGGGCACTTCAAAACGCATGCCAGTCACCTCCGCATCGATACACTCCAGCG
CCTCATTGACGTCCTCCTGGCGATGATTGCCGCGAGGAGCGTCAATCATCACGACCTGAGTGCCCATATGCCGGGGATGAGTACCCCGCAGGGCAAGAAG
AGACGAGCAGACCGCACCTTCCGGGATGAGCAGCTGGACAGGGGCTTTTTCATCGCTCTGCTTGTCGTCCATCTTCCACCGGGGAAGGTTTTGCTAAGTC
TGGACCGCACCAATTGGGAGCACGGGGAAACGCCCATCAACTTTCTGGTGCTTGGAGCCGTGGTTCACGGCTTCACCCTGCCGCTCATCTGGGTGCCTCT
CGACCAGTCTGGGAACAGTCACACCTACGCTCGAATGTGGCTGGTGTTGAAGCTCCTTCGGGCCTGGCCAGCGAAACGCTGGCTGGGTCTGGTGGCCGAT
CGGGAGTTCATCGGCGCGGAATGGTTCCGCTTTCTTCGTCGTCAGGGCATCAAGAGGGCAATTCGTATCCGACAGACCGACATGCTAGACGACATGAAGG
GGAAAGAGTGGTTTGAGCACGTCCAGCACGGTCATTTTCACGAGATTGGCGAAAAGGTGTTCGTGTTCGGGGAGTTGATGCGGGTGGTCGCAACGAGGTC
ACCCACAGGTGACCTCGTCATCATCGCCACAGATTTCAGTGCTCGGAAGACCTGGAGGCTCTACAAACAGCGCTGGTCGATTGAGTGCACCTTCAGCAGT
TTCAAAAAGCGAGGCTTTGACTTAGAGCGAACCGGAATGACGGAAAGGAGCCGTCTACAGCGACTCTTCGGACTGGTGACATTGGCTTGGATGTTCTGTT
TGCGCCTGGGGGTCTGGCTGAGCCAGACCTGGCCCATCCCCGTTCTGAAGCATGGTCGGAGAGCGGTCAGTCTGGTGCGGCACGGTGCTCAGCATCTCGT
GGATGCCCTCCGGTGGAAACCCCAACAGTTCATGGCGATCCTGGAGGTGTTCATCCAGGCTTTTTGCCCGCCAGGAGCGGCTGAAAGTGAAGTTGTCACC
TACTGAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
984 bp327 aa2241207+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MIAARSVNHHDLSAHMPGMSTPQGKKRRADRTFRDEQLDRGFFIALLVVHLPPGKVLLSLDRTNWEHGETPINFLVLGAVVHGFTLPLIWVPLDQSGNSH
TYARMWLVLKLLRAWPAKRWLGLVADREFIGAEWFRFLRRQGIKRAIRIRQTDMLDDMKGKEWFEHVQHGHFHEIGEKVFVFGELMRVVATRSPTGDLVI
IATDFSARKTWRLYKQRWSIECTFSSFKKRGFDLERTGMTERSRLQRLFGLVTLAWMFCLRLGVWLSQTWPIPVLKHGRRAVSLVRHGAQHLVDALRWKP
QQFMAILEVFIQAFCPPGAAESEVVTY

 

Blast result :
Comments
There are 11 copies of ISDra1 in Deinococcus radiodurans genome. Note that codon stop is in IRR.
References
1] White,O., Eisen,J.A., Heidelberg,J.F., Hickey,E.K., Peterson,J.D., Dodson,R.J., Haft,D.H., Gwinn,M.L., Nelson,W.C., Richardson,D.L., Moffat,K.S., Qin,H., Jiang,L., Pamphile,W., Crosby,M., Shen,M., Vamathevan,J.J., Lam,P., McDonald,L., Utterback,T., Zalewski,C., Makarova,K.S., Aravind,L., Daly,M.J., Minton,K.W., Fleischmann,R.D., Ketchum,K.A., Nelson,K.E., Salzberg,S., Smith,H.O., Venter,J.C. and Fraser,C.M. (1999) GenBank Direct Submission