ISDra1
- Family IS4
- Group IS10
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AE000513 | ND | Deinococcus radiodurans | Deinococcus radiodurans Deinococcus radiodurans plasmid pMP1 Deinococcus radiodurans plasmid pCP1 |
DNA section
IS Length : 1207 bp
Ends
IR Length : 23/27
IRL : CTCAGTAGGTGACAACTTCGGTTCGACGTTGTCCCAGACGGCAAAAACCA
IRR : CTCAGTAGGTGACAACTTCACTTTCAGCCGCTCCTGGCGGGCAAAAAGCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCCGCAAGTA | AGCCCACTC | ATACCCGAAT | 9 |
CGTTTCACTT | CGGCCTGAT | ACTCGGTGAT | 9 |
DNA sequence
CTCAGTAGGTGACAACTTCGGTTCGACGTTGTCCCAGACGGCAAAAACCAACAGTCGGCCCCATCAAGCTTGATGGGGCCGACTGTTCGCGGTTTCCTGA
GAGTGTGAAATCAACAGAGGGGAGCTGCCCAGCAGGCTACCGCACTCACCGGGCACTTCAAAACGCATGCCAGTCACCTCCGCATCGATACACTCCAGCG
CCTCATTGACGTCCTCCTGGCGATGATTGCCGCGAGGAGCGTCAATCATCACGACCTGAGTGCCCATATGCCGGGGATGAGTACCCCGCAGGGCAAGAAG
AGACGAGCAGACCGCACCTTCCGGGATGAGCAGCTGGACAGGGGCTTTTTCATCGCTCTGCTTGTCGTCCATCTTCCACCGGGGAAGGTTTTGCTAAGTC
TGGACCGCACCAATTGGGAGCACGGGGAAACGCCCATCAACTTTCTGGTGCTTGGAGCCGTGGTTCACGGCTTCACCCTGCCGCTCATCTGGGTGCCTCT
CGACCAGTCTGGGAACAGTCACACCTACGCTCGAATGTGGCTGGTGTTGAAGCTCCTTCGGGCCTGGCCAGCGAAACGCTGGCTGGGTCTGGTGGCCGAT
CGGGAGTTCATCGGCGCGGAATGGTTCCGCTTTCTTCGTCGTCAGGGCATCAAGAGGGCAATTCGTATCCGACAGACCGACATGCTAGACGACATGAAGG
GGAAAGAGTGGTTTGAGCACGTCCAGCACGGTCATTTTCACGAGATTGGCGAAAAGGTGTTCGTGTTCGGGGAGTTGATGCGGGTGGTCGCAACGAGGTC
ACCCACAGGTGACCTCGTCATCATCGCCACAGATTTCAGTGCTCGGAAGACCTGGAGGCTCTACAAACAGCGCTGGTCGATTGAGTGCACCTTCAGCAGT
TTCAAAAAGCGAGGCTTTGACTTAGAGCGAACCGGAATGACGGAAAGGAGCCGTCTACAGCGACTCTTCGGACTGGTGACATTGGCTTGGATGTTCTGTT
TGCGCCTGGGGGTCTGGCTGAGCCAGACCTGGCCCATCCCCGTTCTGAAGCATGGTCGGAGAGCGGTCAGTCTGGTGCGGCACGGTGCTCAGCATCTCGT
GGATGCCCTCCGGTGGAAACCCCAACAGTTCATGGCGATCCTGGAGGTGTTCATCCAGGCTTTTTGCCCGCCAGGAGCGGCTGAAAGTGAAGTTGTCACC
TACTGAG
GAGTGTGAAATCAACAGAGGGGAGCTGCCCAGCAGGCTACCGCACTCACCGGGCACTTCAAAACGCATGCCAGTCACCTCCGCATCGATACACTCCAGCG
CCTCATTGACGTCCTCCTGGCGATGATTGCCGCGAGGAGCGTCAATCATCACGACCTGAGTGCCCATATGCCGGGGATGAGTACCCCGCAGGGCAAGAAG
AGACGAGCAGACCGCACCTTCCGGGATGAGCAGCTGGACAGGGGCTTTTTCATCGCTCTGCTTGTCGTCCATCTTCCACCGGGGAAGGTTTTGCTAAGTC
TGGACCGCACCAATTGGGAGCACGGGGAAACGCCCATCAACTTTCTGGTGCTTGGAGCCGTGGTTCACGGCTTCACCCTGCCGCTCATCTGGGTGCCTCT
CGACCAGTCTGGGAACAGTCACACCTACGCTCGAATGTGGCTGGTGTTGAAGCTCCTTCGGGCCTGGCCAGCGAAACGCTGGCTGGGTCTGGTGGCCGAT
CGGGAGTTCATCGGCGCGGAATGGTTCCGCTTTCTTCGTCGTCAGGGCATCAAGAGGGCAATTCGTATCCGACAGACCGACATGCTAGACGACATGAAGG
GGAAAGAGTGGTTTGAGCACGTCCAGCACGGTCATTTTCACGAGATTGGCGAAAAGGTGTTCGTGTTCGGGGAGTTGATGCGGGTGGTCGCAACGAGGTC
ACCCACAGGTGACCTCGTCATCATCGCCACAGATTTCAGTGCTCGGAAGACCTGGAGGCTCTACAAACAGCGCTGGTCGATTGAGTGCACCTTCAGCAGT
TTCAAAAAGCGAGGCTTTGACTTAGAGCGAACCGGAATGACGGAAAGGAGCCGTCTACAGCGACTCTTCGGACTGGTGACATTGGCTTGGATGTTCTGTT
TGCGCCTGGGGGTCTGGCTGAGCCAGACCTGGCCCATCCCCGTTCTGAAGCATGGTCGGAGAGCGGTCAGTCTGGTGCGGCACGGTGCTCAGCATCTCGT
GGATGCCCTCCGGTGGAAACCCCAACAGTTCATGGCGATCCTGGAGGTGTTCATCCAGGCTTTTTGCCCGCCAGGAGCGGCTGAAAGTGAAGTTGTCACC
TACTGAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
984 bp | 327 aa | 224 | 1207 | + | No |
Chemistry : DDE
ORF sequence :
MIAARSVNHHDLSAHMPGMSTPQGKKRRADRTFRDEQLDRGFFIALLVVHLPPGKVLLSLDRTNWEHGETPINFLVLGAVVHGFTLPLIWVPLDQSGNSH
TYARMWLVLKLLRAWPAKRWLGLVADREFIGAEWFRFLRRQGIKRAIRIRQTDMLDDMKGKEWFEHVQHGHFHEIGEKVFVFGELMRVVATRSPTGDLVI
IATDFSARKTWRLYKQRWSIECTFSSFKKRGFDLERTGMTERSRLQRLFGLVTLAWMFCLRLGVWLSQTWPIPVLKHGRRAVSLVRHGAQHLVDALRWKP
QQFMAILEVFIQAFCPPGAAESEVVTY
TYARMWLVLKLLRAWPAKRWLGLVADREFIGAEWFRFLRRQGIKRAIRIRQTDMLDDMKGKEWFEHVQHGHFHEIGEKVFVFGELMRVVATRSPTGDLVI
IATDFSARKTWRLYKQRWSIECTFSSFKKRGFDLERTGMTERSRLQRLFGLVTLAWMFCLRLGVWLSQTWPIPVLKHGRRAVSLVRHGAQHLVDALRWKP
QQFMAILEVFIQAFCPPGAAESEVVTY
Blast result :
Comments
There are 11 copies of ISDra1 in Deinococcus radiodurans genome. Note that codon stop is in IRR.
References
1] White,O., Eisen,J.A., Heidelberg,J.F., Hickey,E.K., Peterson,J.D., Dodson,R.J., Haft,D.H., Gwinn,M.L., Nelson,W.C., Richardson,D.L., Moffat,K.S., Qin,H., Jiang,L., Pamphile,W., Crosby,M., Shen,M., Vamathevan,J.J., Lam,P., McDonald,L., Utterback,T., Zalewski,C., Makarova,K.S., Aravind,L., Daly,M.J., Minton,K.W., Fleischmann,R.D., Ketchum,K.A., Nelson,K.E., Salzberg,S., Smith,H.O., Venter,J.C. and Fraser,C.M. (1999) GenBank Direct Submission