ISPye59
- Family IS110
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CP024422 | ND | Paracoccus yeei | Paracoccus yeei Paracoccus yeei TT13 |
DNA section
IS Length : 1154 bp
Ends
Left end : TGTCTTATGAGATTTGAGGCTCCTGAGGCAAAAGGGAGCCGCTGCCCAGCACCGCAAACTGCGGGGCAGCGGCGGGGGTGGCGCCGTGCGGAGCTTGGTC
Right end : CGCCATTACCGCCATCATGCGGCGCATCATCATCCTTGCAAACACCTTGCTGCGCGAGAGGCGAGATTGGCTGCCTGACCGCCCTTGACCAAGACGGATA
Comments : Insertion within another IS (IS3 family) enabled precisely defining ends and DRs.
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| gatggcggag | CT | CGACCGCCGA | 2 |
DNA sequence
TGTCTTATGAGATTTGAGGCTCCTGAGGCAAAAGGGAGCCGCTGCCCAGCACCGCAAACTGCGGGGCAGCGGCGGGGGTGGCGCCGTGCGGAGCTTGGTC
TTGAAGGACCGCGGTCGAGTTTGACGAGCCCCCGTCTTTTCTAACGACCTGAACGGATACGTGGGCTGCGGGCCCGAACGACAAGCATAGGTAGGAAGAA
AAGATGGCCAAGGATACCATCGGCATTGACGTGTCGAAAGACCGTCTTGACGCATTCTGGCATTCCCGGACGGAGGCGTGCTGCCTGCCCAATACGCCTG
AAGGTTTCGGGCAATTGTGCGCCTGGCTGGGAAAGGAGGAAGACGTTCTCATCGTCTTCGAGGCGACCGGCGCCTATCACCGGGGGCTTGAGCGGCATCT
GGGTCTGGCGGGGCTGCCTTTCATCAAAGTCAATCCAAAGCAGGCGCGGCGCTTTGCGCAAGCAATCGGACGATTGGCAAAGACTGATAGCGTCGACGCC
AGAATGCTGGCGCGCATGGGCGTTGTGCTTGACCTGACGCCTCAAGTCGTTGAAGGCGAAGATGTTCATGATCTCAGAGAGTTGCTGACTGCCCGCCGCG
CTTTGATCAAAGATCAGGTGACCGCGAAGACGCGGCTTGCTACTGCACTGAACCCGCTCGTGCGAGAACAGCTTGGTCGCCGCATTGAGGACATTGGTGC
CGATATCCAAGCGCTTGATGAGGTCATCGCGCAGATCGCCAGGCAGCGAGGCACCCTTGAAGAGCGCATCCGCCGTTTGATGACCATTCCGGGGATTGGT
CGTCTGACCGCGACCACCATGCTGATCGACATGCCGGAACTTGGGCACCTCGAGGGCAAGAAGATCACCGCTCTCGCCGGACTTGCGCCCATGACGCAGC
AATCTGGAAAGTGGCAGGGCAAGGAGCGGATCACCGGCGGTCGGTCATCAATTCGGCGCGCGATCTACATGCCCGCACTTGTCGCCATTCGTTTCAACCG
GGACCTCCACGACAAGTATCAGCAGCTGCTAAAGGCCGGCAAAGCGAAGAAAGTCGCCATTACCGCCATCATGCGGCGCATCATCATCCTTGCAAACACC
TTGCTGCGCGAGAGGCGAGATTGGCTGCCTGACCGCCCTTGACCAAGACGGATA
TTGAAGGACCGCGGTCGAGTTTGACGAGCCCCCGTCTTTTCTAACGACCTGAACGGATACGTGGGCTGCGGGCCCGAACGACAAGCATAGGTAGGAAGAA
AAGATGGCCAAGGATACCATCGGCATTGACGTGTCGAAAGACCGTCTTGACGCATTCTGGCATTCCCGGACGGAGGCGTGCTGCCTGCCCAATACGCCTG
AAGGTTTCGGGCAATTGTGCGCCTGGCTGGGAAAGGAGGAAGACGTTCTCATCGTCTTCGAGGCGACCGGCGCCTATCACCGGGGGCTTGAGCGGCATCT
GGGTCTGGCGGGGCTGCCTTTCATCAAAGTCAATCCAAAGCAGGCGCGGCGCTTTGCGCAAGCAATCGGACGATTGGCAAAGACTGATAGCGTCGACGCC
AGAATGCTGGCGCGCATGGGCGTTGTGCTTGACCTGACGCCTCAAGTCGTTGAAGGCGAAGATGTTCATGATCTCAGAGAGTTGCTGACTGCCCGCCGCG
CTTTGATCAAAGATCAGGTGACCGCGAAGACGCGGCTTGCTACTGCACTGAACCCGCTCGTGCGAGAACAGCTTGGTCGCCGCATTGAGGACATTGGTGC
CGATATCCAAGCGCTTGATGAGGTCATCGCGCAGATCGCCAGGCAGCGAGGCACCCTTGAAGAGCGCATCCGCCGTTTGATGACCATTCCGGGGATTGGT
CGTCTGACCGCGACCACCATGCTGATCGACATGCCGGAACTTGGGCACCTCGAGGGCAAGAAGATCACCGCTCTCGCCGGACTTGCGCCCATGACGCAGC
AATCTGGAAAGTGGCAGGGCAAGGAGCGGATCACCGGCGGTCGGTCATCAATTCGGCGCGCGATCTACATGCCCGCACTTGTCGCCATTCGTTTCAACCG
GGACCTCCACGACAAGTATCAGCAGCTGCTAAAGGCCGGCAAAGCGAAGAAAGTCGCCATTACCGCCATCATGCGGCGCATCATCATCCTTGCAAACACC
TTGCTGCGCGAGAGGCGAGATTGGCTGCCTGACCGCCCTTGACCAAGACGGATA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 939 bp | 312 aa | 204 | 1142 | + | No |
Chemistry : DEDD
ORF sequence :
MAKDTIGIDVSKDRLDAFWHSRTEACCLPNTPEGFGQLCAWLGKEEDVLIVFEATGAYHRGLERHLGLAGLPFIKVNPKQARRFAQAIGRLAKTDSVDAR
MLARMGVVLDLTPQVVEGEDVHDLRELLTARRALIKDQVTAKTRLATALNPLVREQLGRRIEDIGADIQALDEVIAQIARQRGTLEERIRRLMTIPGIGR
LTATTMLIDMPELGHLEGKKITALAGLAPMTQQSGKWQGKERITGGRSSIRRAIYMPALVAIRFNRDLHDKYQQLLKAGKAKKVAITAIMRRIIILANTL
LRERRDWLPDRP
MLARMGVVLDLTPQVVEGEDVHDLRELLTARRALIKDQVTAKTRLATALNPLVREQLGRRIEDIGADIQALDEVIAQIARQRGTLEERIRRLMTIPGIGR
LTATTMLIDMPELGHLEGKKITALAGLAPMTQQSGKWQGKERITGGRSSIRRAIYMPALVAIRFNRDLHDKYQQLLKAGKAKKVAITAIMRRIIILANTL
LRERRDWLPDRP
Blast result :
Comments
ISPye59 is 61% aa similar to ISHne5.
ISPye59 was identified by in silico sequence analysis of Paracoccus yeei strain TT13 (there are 3 copies present in the genome, all inserted in the same position within another IS from the IS3 family).
ISPye59 was identified by in silico sequence analysis of Paracoccus yeei strain TT13 (there are 3 copies present in the genome, all inserted in the same position within another IS from the IS3 family).
References