ISPye58

  • Family IS5
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP024422 ND Paracoccus yeei
Paracoccus yeei
Paracoccus yeei TT13
DNA section
IS Length : 1366 bp

Ends


IR Length : 18/24

IRL : CAGGCTGCTGAAGAAGTCCGCCCTCGACGCGGTTTGAGGAACATGATTCA
IRR : CAGGTCGCTGAATTAGTCGCCGTGCCGGAACGTTTTTCCGTTGGATGGAC

Insertion site


Left flankDirect repeatRight flankDR Length
gatgacgcccTTAA/Gggaagcagtg4

DNA sequence

CAGGCTGCTGAAGAAGTCCGCCCTCGACGCGGTTTGAGGAACATGATTCACCCTCGGGACGACAACGGCGGGGGTGACGATGCGCGGGACGGACGAGACG
AGCGGGTCGCTGTTCAGCTATGTCGATCTTGAGGCGCGGATCCCGGCACGGCATCCGCTGCGCAAGATCCGGCAGGTGGTGAACGAGGCGCTGGCCAGCC
TCGATCCCGAGTTCGAGTCGCTTTACACCGACTTCGGCCGTCCCTCGATCCCGCCGGAACGGCTGATCCGGGCGAGCTTGATCCAGATCCTGTTCTCGGT
CCGCTCCGAGCGGCAGTTGATGGAGCAGATGCAGTATAACCTGCTGTTCCGCTGGTTCGTGGGGCTGGGCGTCGACGATCCCGTCTGGGTATCGACGGTG
TTCACCAAGAACCGCGATCGGCTGCTGACGACGGAGATGTCGCGCAAGGTGATGGCCGCGATCCTGGCGCATCGTGAGGTCGCGCCGTTGTTGTCCGACG
ACCACTTCTCGGTGGATGGGACGCTGGTCAAGGCCTGGGCTTCGATGAAGAGCTTTCAGGCCAGGACGGGGGACACTCCGCCCGAGGACGACGGCTCGGG
TGATCCGCCCGGACCTGAGGGCACCCCCGAAGACCAGCCTGAACCGACCCAAGCCGAGTCAGCCCCGATGCTCCGCCACACCCGCCAGCACCGCAACGTC
GAGGTCGATTTCCGGGGCGAAAAGCGCTCGAACGCCACCCATGCGTCGACCACCGACCCGGACGCCCGGCTCTACAATAAGTCTCCCGGAACCGGCGCGA
TGCTGTGCTTCATCGGGCATGCGCTGATGGAGAACCGCAGCGGCCTGATCGTCCAGGGCGACCTGACCCGGGCCGACGGCCGTGCCGAACGGCGTGCCGC
GCTGGACATGATCCACCGCCATTCCCCCGGATCGGCCCGGCGGCTGACGCTTGGGGCAGACAAGGGATATGACGCGGCCGGGTTTGTCACCGACCTGCGG
CTCGCCTGCGTGACCCCGCATGTCGCCCGGAAGTCGCGACATTCAGCGATCGACGGCCGCACCACCCGGCATGAGAGCCATGCCCTGTCCCAGAAACACC
GCAAGCGCATCGAGGAGGCTTTCGGCTGGGCCAAGACCGTCGGTGGCATGGCTCAGACCGTCTATCGCGGCGTCGAGCGGGTGCGATCCCGCTTCATCCT
GACGATGGCCGCTAACAACCTCGCCCGACTGCCCCGGCTGCTGGCCGCATAAGCCGAAAGCCGGCATCGGGCGCGAACGCCGTTTCTCAGGAACGGGCCG
GACGCGAAAGGCCGCCGTCCATCCAACGGAAAAACGTTCCGGCACGGCGACTAATTCAGCGACCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1171 bp390 aa801250+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRGTDETSGSLFSYVDLEARIPARHPLRKIRQVVNEALASLDPEFESLYTDFGRPSIPPERLIRASLIQILFSVRSERQLMEQMQYNLLFRWFVGLGVDD
PVWVSTVFTKNRDRLLTTEMSRKVMAAILAHREVAPLLSDDHFSVDGTLVKAWASMKSFQARTGDTPPEDDGSGDPPGPEGTPEDQPEPTQAESAPMLRH
TRQHRNVEVDFRGEKRSNATHASTTDPDARLYNKSPGTGAMLCFIGHALMENRSGLIVQGDLTRADGRAERRAALDMIHRHSPGSARRLTLGADKGYDAA
GFVTDLRLACVTPHVARKSRHSAIDGRTTRHESHALSQKHRKRIEEAFGWAKTVGGMAQTVYRGVERVRSRFILTMAANNLARLPRLLAA

 

Blast result :
Comments
ISPye58 is 91% aa similar to ISRosp6.
ISPye58 was identified by in silico sequence analysis of Paracoccus yeei strain TT13 (1 copy present in the genome).
References