ISPye58
- Family IS5
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP024422 | ND | Paracoccus yeei | Paracoccus yeei Paracoccus yeei TT13 |
DNA section
IS Length : 1366 bp
Ends
IR Length : 18/24
IRL : CAGGCTGCTGAAGAAGTCCGCCCTCGACGCGGTTTGAGGAACATGATTCA
IRR : CAGGTCGCTGAATTAGTCGCCGTGCCGGAACGTTTTTCCGTTGGATGGAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
gatgacgccc | TTAA/G | ggaagcagtg | 4 |
DNA sequence
CAGGCTGCTGAAGAAGTCCGCCCTCGACGCGGTTTGAGGAACATGATTCACCCTCGGGACGACAACGGCGGGGGTGACGATGCGCGGGACGGACGAGACG
AGCGGGTCGCTGTTCAGCTATGTCGATCTTGAGGCGCGGATCCCGGCACGGCATCCGCTGCGCAAGATCCGGCAGGTGGTGAACGAGGCGCTGGCCAGCC
TCGATCCCGAGTTCGAGTCGCTTTACACCGACTTCGGCCGTCCCTCGATCCCGCCGGAACGGCTGATCCGGGCGAGCTTGATCCAGATCCTGTTCTCGGT
CCGCTCCGAGCGGCAGTTGATGGAGCAGATGCAGTATAACCTGCTGTTCCGCTGGTTCGTGGGGCTGGGCGTCGACGATCCCGTCTGGGTATCGACGGTG
TTCACCAAGAACCGCGATCGGCTGCTGACGACGGAGATGTCGCGCAAGGTGATGGCCGCGATCCTGGCGCATCGTGAGGTCGCGCCGTTGTTGTCCGACG
ACCACTTCTCGGTGGATGGGACGCTGGTCAAGGCCTGGGCTTCGATGAAGAGCTTTCAGGCCAGGACGGGGGACACTCCGCCCGAGGACGACGGCTCGGG
TGATCCGCCCGGACCTGAGGGCACCCCCGAAGACCAGCCTGAACCGACCCAAGCCGAGTCAGCCCCGATGCTCCGCCACACCCGCCAGCACCGCAACGTC
GAGGTCGATTTCCGGGGCGAAAAGCGCTCGAACGCCACCCATGCGTCGACCACCGACCCGGACGCCCGGCTCTACAATAAGTCTCCCGGAACCGGCGCGA
TGCTGTGCTTCATCGGGCATGCGCTGATGGAGAACCGCAGCGGCCTGATCGTCCAGGGCGACCTGACCCGGGCCGACGGCCGTGCCGAACGGCGTGCCGC
GCTGGACATGATCCACCGCCATTCCCCCGGATCGGCCCGGCGGCTGACGCTTGGGGCAGACAAGGGATATGACGCGGCCGGGTTTGTCACCGACCTGCGG
CTCGCCTGCGTGACCCCGCATGTCGCCCGGAAGTCGCGACATTCAGCGATCGACGGCCGCACCACCCGGCATGAGAGCCATGCCCTGTCCCAGAAACACC
GCAAGCGCATCGAGGAGGCTTTCGGCTGGGCCAAGACCGTCGGTGGCATGGCTCAGACCGTCTATCGCGGCGTCGAGCGGGTGCGATCCCGCTTCATCCT
GACGATGGCCGCTAACAACCTCGCCCGACTGCCCCGGCTGCTGGCCGCATAAGCCGAAAGCCGGCATCGGGCGCGAACGCCGTTTCTCAGGAACGGGCCG
GACGCGAAAGGCCGCCGTCCATCCAACGGAAAAACGTTCCGGCACGGCGACTAATTCAGCGACCTG
AGCGGGTCGCTGTTCAGCTATGTCGATCTTGAGGCGCGGATCCCGGCACGGCATCCGCTGCGCAAGATCCGGCAGGTGGTGAACGAGGCGCTGGCCAGCC
TCGATCCCGAGTTCGAGTCGCTTTACACCGACTTCGGCCGTCCCTCGATCCCGCCGGAACGGCTGATCCGGGCGAGCTTGATCCAGATCCTGTTCTCGGT
CCGCTCCGAGCGGCAGTTGATGGAGCAGATGCAGTATAACCTGCTGTTCCGCTGGTTCGTGGGGCTGGGCGTCGACGATCCCGTCTGGGTATCGACGGTG
TTCACCAAGAACCGCGATCGGCTGCTGACGACGGAGATGTCGCGCAAGGTGATGGCCGCGATCCTGGCGCATCGTGAGGTCGCGCCGTTGTTGTCCGACG
ACCACTTCTCGGTGGATGGGACGCTGGTCAAGGCCTGGGCTTCGATGAAGAGCTTTCAGGCCAGGACGGGGGACACTCCGCCCGAGGACGACGGCTCGGG
TGATCCGCCCGGACCTGAGGGCACCCCCGAAGACCAGCCTGAACCGACCCAAGCCGAGTCAGCCCCGATGCTCCGCCACACCCGCCAGCACCGCAACGTC
GAGGTCGATTTCCGGGGCGAAAAGCGCTCGAACGCCACCCATGCGTCGACCACCGACCCGGACGCCCGGCTCTACAATAAGTCTCCCGGAACCGGCGCGA
TGCTGTGCTTCATCGGGCATGCGCTGATGGAGAACCGCAGCGGCCTGATCGTCCAGGGCGACCTGACCCGGGCCGACGGCCGTGCCGAACGGCGTGCCGC
GCTGGACATGATCCACCGCCATTCCCCCGGATCGGCCCGGCGGCTGACGCTTGGGGCAGACAAGGGATATGACGCGGCCGGGTTTGTCACCGACCTGCGG
CTCGCCTGCGTGACCCCGCATGTCGCCCGGAAGTCGCGACATTCAGCGATCGACGGCCGCACCACCCGGCATGAGAGCCATGCCCTGTCCCAGAAACACC
GCAAGCGCATCGAGGAGGCTTTCGGCTGGGCCAAGACCGTCGGTGGCATGGCTCAGACCGTCTATCGCGGCGTCGAGCGGGTGCGATCCCGCTTCATCCT
GACGATGGCCGCTAACAACCTCGCCCGACTGCCCCGGCTGCTGGCCGCATAAGCCGAAAGCCGGCATCGGGCGCGAACGCCGTTTCTCAGGAACGGGCCG
GACGCGAAAGGCCGCCGTCCATCCAACGGAAAAACGTTCCGGCACGGCGACTAATTCAGCGACCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1171 bp | 390 aa | 80 | 1250 | + | No |
Chemistry : DDE
ORF sequence :
MRGTDETSGSLFSYVDLEARIPARHPLRKIRQVVNEALASLDPEFESLYTDFGRPSIPPERLIRASLIQILFSVRSERQLMEQMQYNLLFRWFVGLGVDD
PVWVSTVFTKNRDRLLTTEMSRKVMAAILAHREVAPLLSDDHFSVDGTLVKAWASMKSFQARTGDTPPEDDGSGDPPGPEGTPEDQPEPTQAESAPMLRH
TRQHRNVEVDFRGEKRSNATHASTTDPDARLYNKSPGTGAMLCFIGHALMENRSGLIVQGDLTRADGRAERRAALDMIHRHSPGSARRLTLGADKGYDAA
GFVTDLRLACVTPHVARKSRHSAIDGRTTRHESHALSQKHRKRIEEAFGWAKTVGGMAQTVYRGVERVRSRFILTMAANNLARLPRLLAA
PVWVSTVFTKNRDRLLTTEMSRKVMAAILAHREVAPLLSDDHFSVDGTLVKAWASMKSFQARTGDTPPEDDGSGDPPGPEGTPEDQPEPTQAESAPMLRH
TRQHRNVEVDFRGEKRSNATHASTTDPDARLYNKSPGTGAMLCFIGHALMENRSGLIVQGDLTRADGRAERRAALDMIHRHSPGSARRLTLGADKGYDAA
GFVTDLRLACVTPHVARKSRHSAIDGRTTRHESHALSQKHRKRIEEAFGWAKTVGGMAQTVYRGVERVRSRFILTMAANNLARLPRLLAA
Blast result :
Comments
ISPye58 is 91% aa similar to ISRosp6.
ISPye58 was identified by in silico sequence analysis of Paracoccus yeei strain TT13 (1 copy present in the genome).
ISPye58 was identified by in silico sequence analysis of Paracoccus yeei strain TT13 (1 copy present in the genome).
References