ISPye55
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP024423 | ND | Paracoccus yeei | Paracoccus yeei Paracoccus yeei TT13 |
DNA section
IS Length : 1600 bp
Ends
IR Length : 17/18
IRL : GAGCCTGTGTGGAAACTCTGCTTTATGTTAGACTCGGACATTGTGACGGG
IRR : TAGCCTGTGTGGAAACTCGCCGCATCGGGAGGGGGTGGTTCTTCGGACTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ccctgccttg | AGCC | caaacccgcc | 4 |
cgacgctttg | AGCC | cattgcggac | 4 |
gcctccatac | AGCC | caaacccgaa | 4 |
DNA sequence
GAGCCTGTGTGGAAACTCTGCTTTATGTTAGACTCGGACATTGTGACGGGGGATCGGCATGTCGGGCTTCATTGAGGGCGTTGACCGCGCGCAGACGGTC
CTGTTTCCAGATCGGCTCGACGATTGGATTGACGAGGATCATCTGGTTCGCGTGGTTGATCTGTTTGTTGACGAGTTGGATCTGCCGGCTCTTGGCTTTG
CGCGTTCGGCACCAGCACGGACCGGTCGGCCCGGCTATCATCCTGCGATTCTGCTCAAGTTGTTCATCTATGGCTATCTGAACCGGATCCCGTCCAGCCG
CAGGCTGGAGCGGGAGGCTAGTCGAAATGTCGAACTGATGTGGCTGACCGGCCGCCTGGTTCCTGACCACAAGACCATCGCCGACTTCCGCCGCGACAAC
GGACCCGCCATTCGCCGAGTCTGCGCGCAGTTCGTCGAGCTCTGCCGCCGCATCGGCACCCTCAAGGGCGATTGCGTAGCCATCGACGGGAGCAAGTTCA
GAGCCGTCAACAACCGTGACCGCAATTTCACCAAGGGCAAGATCGCCAGCCGCATCGCGCATCTGGACGCCGACGTCGAGCGCTACATTCAGGAGATGGT
CCGGACCGACCGCCAGGAAGAAGGCGAGGCACGGGCTGACAAGGTCGCCCACCTCGGCCGCCGATATGGACGCATCAAGCAGGAGATCGAGCGGCTGAAG
GCAATGGACAAAGCCTTGGCCGACGCACCTGACGGTCAGATCTCGTTGACTGATCCTGATGCCCGCGCCATGGCCACCAGCGCCCGCAACAGCGGAATGG
TCGGCTACAATGTGCAGACGGCGGTGGACGCAGAAACTCACCTGATCGTGGCCCATGACGTCACCAACCAGGTGCATGATCGTGATCTTCTGGCACCAAT
GGCCACAGCGGCCAAAGAGGTATTGGCCCGCAACGAGCTGCATGTTCTGGCTGACAAGGGCTACTTCAGCAGCCGCGAGATCCTGACCTGCTTTGACGCA
GCCATCACCACAACCGTGCCGCGCCCCGAGACCTCGGGCAACCGCGGCAAAGGCATGTATGTGAAGGCCGACTTCGCTTACGAACCAGACGCGGATGTTT
ATCGCTGCCCTGCTGGCGAGGCGCTGAGCTATCGCTATACTGCCGAGGAAGAAGGCCTCCAGTTGCGGCGCTACTGGACCGGCGAATGTGGCAGCTGCCC
CATCAAGTCCCGCTGCACGACCGGCAAAGAACGCCGGATTACGCGATGGGAGCATGAGCACCTGATCGAAGAAGCGCAGATCAGGTTGCGGGGTGCATCA
GAGCCGATGACGGCGCGCCGATCCACCGTCGAGCACCCGTTCGGCACGATCAAGGCATGGATGGGGGCGACCCATTTTCTGACCAGGCGGCTGCCCAACG
TGAAGACGGAAATGGCGCTGAACGTGCTGGCCTACAACATCAAGCGAATGGTGGCCTTGATCGGCATCCGGAACTTGATGACCGCGATGCGGGCATGAAA
AGGAAGGAAAGCTCGCCTCTTTTCTGGCCGCGCTCGTGAAGTGCTGCGCCCAGTCCGAAGAACCACCCCCTCCCGATGCGGCGAGTTTCCACACAGGCTA
CTGTTTCCAGATCGGCTCGACGATTGGATTGACGAGGATCATCTGGTTCGCGTGGTTGATCTGTTTGTTGACGAGTTGGATCTGCCGGCTCTTGGCTTTG
CGCGTTCGGCACCAGCACGGACCGGTCGGCCCGGCTATCATCCTGCGATTCTGCTCAAGTTGTTCATCTATGGCTATCTGAACCGGATCCCGTCCAGCCG
CAGGCTGGAGCGGGAGGCTAGTCGAAATGTCGAACTGATGTGGCTGACCGGCCGCCTGGTTCCTGACCACAAGACCATCGCCGACTTCCGCCGCGACAAC
GGACCCGCCATTCGCCGAGTCTGCGCGCAGTTCGTCGAGCTCTGCCGCCGCATCGGCACCCTCAAGGGCGATTGCGTAGCCATCGACGGGAGCAAGTTCA
GAGCCGTCAACAACCGTGACCGCAATTTCACCAAGGGCAAGATCGCCAGCCGCATCGCGCATCTGGACGCCGACGTCGAGCGCTACATTCAGGAGATGGT
CCGGACCGACCGCCAGGAAGAAGGCGAGGCACGGGCTGACAAGGTCGCCCACCTCGGCCGCCGATATGGACGCATCAAGCAGGAGATCGAGCGGCTGAAG
GCAATGGACAAAGCCTTGGCCGACGCACCTGACGGTCAGATCTCGTTGACTGATCCTGATGCCCGCGCCATGGCCACCAGCGCCCGCAACAGCGGAATGG
TCGGCTACAATGTGCAGACGGCGGTGGACGCAGAAACTCACCTGATCGTGGCCCATGACGTCACCAACCAGGTGCATGATCGTGATCTTCTGGCACCAAT
GGCCACAGCGGCCAAAGAGGTATTGGCCCGCAACGAGCTGCATGTTCTGGCTGACAAGGGCTACTTCAGCAGCCGCGAGATCCTGACCTGCTTTGACGCA
GCCATCACCACAACCGTGCCGCGCCCCGAGACCTCGGGCAACCGCGGCAAAGGCATGTATGTGAAGGCCGACTTCGCTTACGAACCAGACGCGGATGTTT
ATCGCTGCCCTGCTGGCGAGGCGCTGAGCTATCGCTATACTGCCGAGGAAGAAGGCCTCCAGTTGCGGCGCTACTGGACCGGCGAATGTGGCAGCTGCCC
CATCAAGTCCCGCTGCACGACCGGCAAAGAACGCCGGATTACGCGATGGGAGCATGAGCACCTGATCGAAGAAGCGCAGATCAGGTTGCGGGGTGCATCA
GAGCCGATGACGGCGCGCCGATCCACCGTCGAGCACCCGTTCGGCACGATCAAGGCATGGATGGGGGCGACCCATTTTCTGACCAGGCGGCTGCCCAACG
TGAAGACGGAAATGGCGCTGAACGTGCTGGCCTACAACATCAAGCGAATGGTGGCCTTGATCGGCATCCGGAACTTGATGACCGCGATGCGGGCATGAAA
AGGAAGGAAAGCTCGCCTCTTTTCTGGCCGCGCTCGTGAAGTGCTGCGCCCAGTCCGAAGAACCACCCCCTCCCGATGCGGCGAGTTTCCACACAGGCTA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1440 bp | 479 aa | 59 | 1498 | + | No |
Chemistry : DDE
ORF sequence :
MSGFIEGVDRAQTVLFPDRLDDWIDEDHLVRVVDLFVDELDLPALGFARSAPARTGRPGYHPAILLKLFIYGYLNRIPSSRRLEREASRNVELMWLTGRL
VPDHKTIADFRRDNGPAIRRVCAQFVELCRRIGTLKGDCVAIDGSKFRAVNNRDRNFTKGKIASRIAHLDADVERYIQEMVRTDRQEEGEARADKVAHLG
RRYGRIKQEIERLKAMDKALADAPDGQISLTDPDARAMATSARNSGMVGYNVQTAVDAETHLIVAHDVTNQVHDRDLLAPMATAAKEVLARNELHVLADK
GYFSSREILTCFDAAITTTVPRPETSGNRGKGMYVKADFAYEPDADVYRCPAGEALSYRYTAEEEGLQLRRYWTGECGSCPIKSRCTTGKERRITRWEHE
HLIEEAQIRLRGASEPMTARRSTVEHPFGTIKAWMGATHFLTRRLPNVKTEMALNVLAYNIKRMVALIGIRNLMTAMRA
VPDHKTIADFRRDNGPAIRRVCAQFVELCRRIGTLKGDCVAIDGSKFRAVNNRDRNFTKGKIASRIAHLDADVERYIQEMVRTDRQEEGEARADKVAHLG
RRYGRIKQEIERLKAMDKALADAPDGQISLTDPDARAMATSARNSGMVGYNVQTAVDAETHLIVAHDVTNQVHDRDLLAPMATAAKEVLARNELHVLADK
GYFSSREILTCFDAAITTTVPRPETSGNRGKGMYVKADFAYEPDADVYRCPAGEALSYRYTAEEEGLQLRRYWTGECGSCPIKSRCTTGKERRITRWEHE
HLIEEAQIRLRGASEPMTARRSTVEHPFGTIKAWMGATHFLTRRLPNVKTEMALNVLAYNIKRMVALIGIRNLMTAMRA
Blast result :
Comments
ISPye55 is 89% aa similar to ISPse1.
ISPye55 was identified by in silico sequence analysis of Paracoccus yeei strain TT13 (3 copies present in the genome).
ISPye55 was identified by in silico sequence analysis of Paracoccus yeei strain TT13 (3 copies present in the genome).
References