ISBmu27
- Family IS481
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| AP009386 | ND | Burkholderia multivorans | Burkholderia multivorans ATCC 17616 Burkholderia territorii RF6-non_BP1 Burkholderia sp. ABCPW 11 |
DNA section
IS Length : 1205 bp
Ends
IR Length : 23/35
IRL : TGCGGTGGACTAGACTAAATCTGACGGTGGTTGGTTTTTCATGCTGGCGC
IRR : TGTATTAGCCGGGACTTGATCTGACAGGTAGTCGGGCCGACAAAGTACGA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GAGTACATCA | ACTTGTA | CAACCGGAAA | 7 |
DNA sequence
TGCGGTGGACTAGACTAAATCTGACGGTGGTTGGTTTTTCATGCTGGCGCGCATTGGCGCGAAGGGCGTAGCCCGTAGCGGCAATGCGCGCCGCGAACAG
CAAGGAGTCCACCATGACTCAGGAGCAGAAGGTAATTCGTGCCAAGGTCGGCATACTCGAGTTGGCCCGGCAGCTCGGCAACGTCAGCCAGGCCTGTCGC
GTGATGGGTTACTCGCGCGATAGCTTCTACCGATTTAAGGAACTGTACGATCGAGGCGGTGAAGCTGCGCTGCAGGAGATTTCCCACCACCGGCCGCTGC
TCAAGAACCGCGTGGATCCGCAGGTCGAGGCCGCCGTTGTCGAACTGGCCCTCGAATTGCCAGCCTACGGTCAGGTGCGTATCGCCAACGAGGTCCTCAA
ACGGCATGCTCTGTCCGTCTCGCCCCAAGGCGTCCGTAGCATCTGGTTGCGCCACGATCTGGAGACCATGCCGAAGCGCCTGAAGGCCTTGGAAGCCAAG
TCCGCCCAGGAGGGGTTGGTGCTGACCGAGGCGCAGCTCGTCGCGCTCGAACGAGCCAAGCACGAGAAGGAAGTGCACGGCGAATTCGAGTCCGAATGTC
CGGGCTACTGCGGCGCGCAGGATACGTTCTATGTCGGCAGCCTCAAGGGCGTCGGCCGTGTCTACCAGCAAACTTTCGTCGATACCTACTCGAAGGTTGC
GTTCGCCAAGCTCTACGATCGCAAGACACCCTTGCCGGCGGCGGACCTGCTCAACGATCGCGTTGTCCCGTTCTTCGACGGCTTCGGCATTCCGCTGCTA
CGCGTGCTGACAGACCGCGGCACCGAATACTGCGGCAACCCCGAGCATCACGAATACGAGCTGTATCTGGCCTTGGAGGACATCGACCACACCCGAACAA
AGGCCAAGTCGCCGCAAACCAACGGGATCGTCGAACGGCTGCACAAGACCATGCTCAACGAGTTTTATCGCATCGTCTTCCGCAAGAAGATCTACGACTC
GATCGCCACCTTGCAGACGGACCTTGATGCGTGGCTCGACCAGTACAACAATGAACGAGAGCATCAGGGGCGCTGGTGTTACGGCAAGACGCCGATGCGC
ACTTTCCTCGATTCGCTCGATCTCGCCAAGGAGAAACTCATCCCCCATTGATGACTCGTACTTTGTCGGCCCGACTACCTGTCAGATCAAGTCCCGGCTA
ATACA
CAAGGAGTCCACCATGACTCAGGAGCAGAAGGTAATTCGTGCCAAGGTCGGCATACTCGAGTTGGCCCGGCAGCTCGGCAACGTCAGCCAGGCCTGTCGC
GTGATGGGTTACTCGCGCGATAGCTTCTACCGATTTAAGGAACTGTACGATCGAGGCGGTGAAGCTGCGCTGCAGGAGATTTCCCACCACCGGCCGCTGC
TCAAGAACCGCGTGGATCCGCAGGTCGAGGCCGCCGTTGTCGAACTGGCCCTCGAATTGCCAGCCTACGGTCAGGTGCGTATCGCCAACGAGGTCCTCAA
ACGGCATGCTCTGTCCGTCTCGCCCCAAGGCGTCCGTAGCATCTGGTTGCGCCACGATCTGGAGACCATGCCGAAGCGCCTGAAGGCCTTGGAAGCCAAG
TCCGCCCAGGAGGGGTTGGTGCTGACCGAGGCGCAGCTCGTCGCGCTCGAACGAGCCAAGCACGAGAAGGAAGTGCACGGCGAATTCGAGTCCGAATGTC
CGGGCTACTGCGGCGCGCAGGATACGTTCTATGTCGGCAGCCTCAAGGGCGTCGGCCGTGTCTACCAGCAAACTTTCGTCGATACCTACTCGAAGGTTGC
GTTCGCCAAGCTCTACGATCGCAAGACACCCTTGCCGGCGGCGGACCTGCTCAACGATCGCGTTGTCCCGTTCTTCGACGGCTTCGGCATTCCGCTGCTA
CGCGTGCTGACAGACCGCGGCACCGAATACTGCGGCAACCCCGAGCATCACGAATACGAGCTGTATCTGGCCTTGGAGGACATCGACCACACCCGAACAA
AGGCCAAGTCGCCGCAAACCAACGGGATCGTCGAACGGCTGCACAAGACCATGCTCAACGAGTTTTATCGCATCGTCTTCCGCAAGAAGATCTACGACTC
GATCGCCACCTTGCAGACGGACCTTGATGCGTGGCTCGACCAGTACAACAATGAACGAGAGCATCAGGGGCGCTGGTGTTACGGCAAGACGCCGATGCGC
ACTTTCCTCGATTCGCTCGATCTCGCCAAGGAGAAACTCATCCCCCATTGATGACTCGTACTTTGTCGGCCCGACTACCTGTCAGATCAAGTCCCGGCTA
ATACA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1038 bp | 345 aa | 114 | 1151 | + | No |
Chemistry : DDE
ORF sequence :
MTQEQKVIRAKVGILELARQLGNVSQACRVMGYSRDSFYRFKELYDRGGEAALQEISHHRPLLKNRVDPQVEAAVVELALELPAYGQVRIANEVLKRHAL
SVSPQGVRSIWLRHDLETMPKRLKALEAKSAQEGLVLTEAQLVALERAKHEKEVHGEFESECPGYCGAQDTFYVGSLKGVGRVYQQTFVDTYSKVAFAKL
YDRKTPLPAADLLNDRVVPFFDGFGIPLLRVLTDRGTEYCGNPEHHEYELYLALEDIDHTRTKAKSPQTNGIVERLHKTMLNEFYRIVFRKKIYDSIATL
QTDLDAWLDQYNNEREHQGRWCYGKTPMRTFLDSLDLAKEKLIPH
SVSPQGVRSIWLRHDLETMPKRLKALEAKSAQEGLVLTEAQLVALERAKHEKEVHGEFESECPGYCGAQDTFYVGSLKGVGRVYQQTFVDTYSKVAFAKL
YDRKTPLPAADLLNDRVVPFFDGFGIPLLRVLTDRGTEYCGNPEHHEYELYLALEDIDHTRTKAKSPQTNGIVERLHKTMLNEFYRIVFRKKIYDSIATL
QTDLDAWLDQYNNEREHQGRWCYGKTPMRTFLDSLDLAKEKLIPH
Blast result :
Comments
ISBmu27 is 88% aa similar to ISGdi10.
The ISBmu27 copy in Burkholderia multivorans ATCC 17616 is partial.
The ISBmu27 copy in Burkholderia multivorans ATCC 17616 is partial.
References
1] ISfinder submission (2018)
2] Ohtsubo,Y., Yamashita,A., Kurokawa,K., Takami,H., Yuhara,S., Nishiyama,E., Endo,R., Miyazaki,R., Ono,A., Yano,K., Ito,M., Sota,M., Yuji,N., Hattori,M. and Tsuda,M. (2007) Direct GenBank submission.
3] Sahl,J., Keim,P. and Wagner,D. (2015) Direct GenBank submission.
2] Ohtsubo,Y., Yamashita,A., Kurokawa,K., Takami,H., Yuhara,S., Nishiyama,E., Endo,R., Miyazaki,R., Ono,A., Yano,K., Ito,M., Sota,M., Yuji,N., Hattori,M. and Tsuda,M. (2007) Direct GenBank submission.
3] Sahl,J., Keim,P. and Wagner,D. (2015) Direct GenBank submission.