ISBmu21
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AP009387 | ND | Burkholderia multivorans | Burkholderia multivorans ATCC 17616 |
DNA section
IS Length : 836 bp
Ends
IR Length : 18/24
IRL : GGTTTTGTCGCATTAACGCGGTCAAGTAAAATCCGTCGACCGCAACGCAT
IRR : GGTTGTGTCGCGATAAGGGAGTCAGGACGAGCGGGTTCAGATATAAGGAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGGGACGTCGGCC | ATCGCATCTACGT | 0 |
DNA sequence
GGTTTTGTCGCATTAACGCGGTCAAGTAAAATCCGTCGACCGCAACGCATGACATGCATGATGGCAAAGACGAAGACGCCGCGCAAGACGCTGCCAGCTG
GCATTGGCAAGGTACTGAAGCGGCTGCACTACCCGATGGATGTGATCCTGCTGTGCGTCCGGTGGTACGTGGCGTACTCACTGAGCCTGCGTAACCTCGA
GGAAATGATGGCCGAGCGGGGTATCGAGGTGGACCATTCGAGTGTGCACCGGTGGGTCATCAAGCTGCTGCCTGTGTTTGAAAAAGCATTCCGCAAACGC
AAACGGCCTGTCGGCAGGAGCTGGCGCGTCGATGAGACCTACGTCAAGGTCAAAGGCCAGTGGAAATACTTGTACCGTGCCGTCGACAAGCAGGGTAACA
CGGTGGATTTCCTGCTGCGTGCCCATCGCGATAAGGCCGCTGCTCGCCGCTACTTCGAGAAGGCGATTGAACAGAACGGCGAACCCGAGACAATTACCGT
GGACAGGAGCGGCTCGAATCTGGCCGCGCTCGAAGCGCTTAACGCCGAACGATCGGTGCCGATCAAGGTCCGGCAGAACAAATACCTGAACAACATAGTC
GAGCAGGATCACCGTGCCATCAAACGTATCATCAGGCCGATGATGGGGTTCAGGAATTTCCGCTGTGCACGCATCATCCTCGCCGGCATCGAGATCATGC
ACATGATCCGCAAGGGGCAGATGCGTGACGACGGCGTCGCTTCGACTGCAGCCGAACAATTCTACTCGTTGGCAGCATAAGTAGTCCTCCTTATATCTGA
ACCCGCTCGTCCTGACTCCCTTATCGCGACACAACC
GCATTGGCAAGGTACTGAAGCGGCTGCACTACCCGATGGATGTGATCCTGCTGTGCGTCCGGTGGTACGTGGCGTACTCACTGAGCCTGCGTAACCTCGA
GGAAATGATGGCCGAGCGGGGTATCGAGGTGGACCATTCGAGTGTGCACCGGTGGGTCATCAAGCTGCTGCCTGTGTTTGAAAAAGCATTCCGCAAACGC
AAACGGCCTGTCGGCAGGAGCTGGCGCGTCGATGAGACCTACGTCAAGGTCAAAGGCCAGTGGAAATACTTGTACCGTGCCGTCGACAAGCAGGGTAACA
CGGTGGATTTCCTGCTGCGTGCCCATCGCGATAAGGCCGCTGCTCGCCGCTACTTCGAGAAGGCGATTGAACAGAACGGCGAACCCGAGACAATTACCGT
GGACAGGAGCGGCTCGAATCTGGCCGCGCTCGAAGCGCTTAACGCCGAACGATCGGTGCCGATCAAGGTCCGGCAGAACAAATACCTGAACAACATAGTC
GAGCAGGATCACCGTGCCATCAAACGTATCATCAGGCCGATGATGGGGTTCAGGAATTTCCGCTGTGCACGCATCATCCTCGCCGGCATCGAGATCATGC
ACATGATCCGCAAGGGGCAGATGCGTGACGACGGCGTCGCTTCGACTGCAGCCGAACAATTCTACTCGTTGGCAGCATAAGTAGTCCTCCTTATATCTGA
ACCCGCTCGTCCTGACTCCCTTATCGCGACACAACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
723 bp | 240 aa | 58 | 780 | + | No |
Chemistry : DDE
ORF sequence :
MMAKTKTPRKTLPAGIGKVLKRLHYPMDVILLCVRWYVAYSLSLRNLEEMMAERGIEVDHSSVHRWVIKLLPVFEKAFRKRKRPVGRSWRVDETYVKVKG
QWKYLYRAVDKQGNTVDFLLRAHRDKAAARRYFEKAIEQNGEPETITVDRSGSNLAALEALNAERSVPIKVRQNKYLNNIVEQDHRAIKRIIRPMMGFRN
FRCARIILAGIEIMHMIRKGQMRDDGVASTAAEQFYSLAA
QWKYLYRAVDKQGNTVDFLLRAHRDKAAARRYFEKAIEQNGEPETITVDRSGSNLAALEALNAERSVPIKVRQNKYLNNIVEQDHRAIKRIIRPMMGFRN
FRCARIILAGIEIMHMIRKGQMRDDGVASTAAEQFYSLAA
Blast result :
Comments
ISBmu21 is 80% aa similar to ISEas1.
References
1] ISfinder soumission (2018)
2] Ohtsubo,Y., Yamashita,A., Kurokawa,K., Takami,H., Yuhara,S., Nishiyama,E., Endo,R., Miyazaki,R., Ono,A., Yano,K., Ito,M., Sota,M., Yuji,N., Hattori,M. and Tsuda,M. (2007) Direct GenBank submisison.
2] Ohtsubo,Y., Yamashita,A., Kurokawa,K., Takami,H., Yuhara,S., Nishiyama,E., Endo,R., Miyazaki,R., Ono,A., Yano,K., Ito,M., Sota,M., Yuji,N., Hattori,M. and Tsuda,M. (2007) Direct GenBank submisison.