ISBmu21

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AP009387 ND Burkholderia multivorans
Burkholderia multivorans ATCC 17616
DNA section
IS Length : 836 bp

Ends


IR Length : 18/24

IRL : GGTTTTGTCGCATTAACGCGGTCAAGTAAAATCCGTCGACCGCAACGCAT
IRR : GGTTGTGTCGCGATAAGGGAGTCAGGACGAGCGGGTTCAGATATAAGGAG

Insertion site


Left flankDirect repeatRight flankDR Length
AGGGACGTCGGCCATCGCATCTACGT0

DNA sequence

GGTTTTGTCGCATTAACGCGGTCAAGTAAAATCCGTCGACCGCAACGCATGACATGCATGATGGCAAAGACGAAGACGCCGCGCAAGACGCTGCCAGCTG
GCATTGGCAAGGTACTGAAGCGGCTGCACTACCCGATGGATGTGATCCTGCTGTGCGTCCGGTGGTACGTGGCGTACTCACTGAGCCTGCGTAACCTCGA
GGAAATGATGGCCGAGCGGGGTATCGAGGTGGACCATTCGAGTGTGCACCGGTGGGTCATCAAGCTGCTGCCTGTGTTTGAAAAAGCATTCCGCAAACGC
AAACGGCCTGTCGGCAGGAGCTGGCGCGTCGATGAGACCTACGTCAAGGTCAAAGGCCAGTGGAAATACTTGTACCGTGCCGTCGACAAGCAGGGTAACA
CGGTGGATTTCCTGCTGCGTGCCCATCGCGATAAGGCCGCTGCTCGCCGCTACTTCGAGAAGGCGATTGAACAGAACGGCGAACCCGAGACAATTACCGT
GGACAGGAGCGGCTCGAATCTGGCCGCGCTCGAAGCGCTTAACGCCGAACGATCGGTGCCGATCAAGGTCCGGCAGAACAAATACCTGAACAACATAGTC
GAGCAGGATCACCGTGCCATCAAACGTATCATCAGGCCGATGATGGGGTTCAGGAATTTCCGCTGTGCACGCATCATCCTCGCCGGCATCGAGATCATGC
ACATGATCCGCAAGGGGCAGATGCGTGACGACGGCGTCGCTTCGACTGCAGCCGAACAATTCTACTCGTTGGCAGCATAAGTAGTCCTCCTTATATCTGA
ACCCGCTCGTCCTGACTCCCTTATCGCGACACAACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
723 bp240 aa58780+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MMAKTKTPRKTLPAGIGKVLKRLHYPMDVILLCVRWYVAYSLSLRNLEEMMAERGIEVDHSSVHRWVIKLLPVFEKAFRKRKRPVGRSWRVDETYVKVKG
QWKYLYRAVDKQGNTVDFLLRAHRDKAAARRYFEKAIEQNGEPETITVDRSGSNLAALEALNAERSVPIKVRQNKYLNNIVEQDHRAIKRIIRPMMGFRN
FRCARIILAGIEIMHMIRKGQMRDDGVASTAAEQFYSLAA

 

Blast result :
Comments
ISBmu21 is 80% aa similar to ISEas1.
References
1] ISfinder soumission (2018)
2] Ohtsubo,Y., Yamashita,A., Kurokawa,K., Takami,H., Yuhara,S., Nishiyama,E., Endo,R., Miyazaki,R., Ono,A., Yano,K., Ito,M., Sota,M., Yuji,N., Hattori,M. and Tsuda,M. (2007) Direct GenBank submisison.