ISBmu4
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AP009385 | ND | Burkholderia multivorans | Burkholderia multivorans ATCC 17616 |
DNA section
IS Length : 1855 bp
Ends
Left end : GGTATCTATAGCAGTGCGGGGTTGACGCCGAGGGGCAAGTCGATGATAGGGCTTCAGGGCGCCTCGACGAAGTGATCGCGGGTCGACCTTCGCACCGTCG
Right end : CGCTCGAGGTCCGCCAGTCTCGCCGCAACCAGCCTATGCCCGAACCGGCGTAGAGCCCTGCTCCGAAGCCGCGAACATGCGTTGACAGTCGGTACGAGAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGGCAAAAGC | CA | CTTGGCCCAG | 2 |
DNA sequence
GGTATCTATAGCAGTGCGGGGTTGACGCCGAGGGGCAAGTCGATGATAGGGCTTCAGGGCGCCTCGACGAAGTGATCGCGGGTCGACCTTCGCACCGTCG
AATTCGATAGCTTCTTGTCTGAATCGGGGTGCAGGACGTACGCCGAGGGGCAAGAGTATGAGGCCGAGCTTCTGTCGCTTCTGACTCGCCGTTCAACTCC
GCCCGCTCGCTCGCTGGTACTCTTGCCTGCGGGCACCGGACCCGGCGACCTTAAGAACGTGGGAGAGCCCGCAAAGTTCGTCCCGACGATGTGAAGCCCA
TGGTTGCGGGGTTCGGGCTGGCGCAGGCAAGAGTAACGAGATGGTGGCGCATGAATCTGCGAGTTTCAAGCGGCCACGAATGAAACACCTGGCAGTGCTG
CCCAGCGACGAGCCCTCTGATTCGTTGATAAGGAGAACAATAACTCATGGCTTCTATCAGCAATGCACCCGTGCGTCACCGGACCGTCGGCATCGATCTG
GCAATAAGTGCAGTTCAGGTCGCGCAGATCTTCGATGATGGACGTGCAATTGGCAAACCGATCCGCTTCCGTTTGACGTCAACCGACCTCAGGCGTTTCG
TGTCAGCCATCAAGAGCGGCGTCGGCGCCGATACGCCGATCACAGCCGTGATGGAGCCAACCGGCATGGCATGGTTTCCGGTGGCCAACTGGCTGCAGCG
TGCCGGAATCAAAGTCATTCGGGTCAAGGGTCAGCGCGTGAAGGCGTTACGCAAATACCTCAGCGAGCATGCCAAGACCGACGCGGCCGATGCACATGTA
TTGGGCGCAATACCCGGCTTTGGTGGCCGTGGCCTCGACCCAGTTCATGTGCCAGGGCCCGAGCAACATTCACTACAACGACTGACCAAACAGCGTCACC
GCTATCAGGAGCTAGTGTGTTCCGCGCGGCGCCGCGTTCTTGACCTCATCCGCTGGGCGTGCCCGGCGCTTGAGCCTGTGTTGCCCGATACGGTCACGCA
ACTCACGCTAGCAATTCTCGGCGAGCTGTTGGATCCGCGCAAGGTCGTAGCCATGCGACGCGATGTGCTCGCCCGATTCCTGTCACAACACGCCTCAGGG
AATCATCCCAAGAGCGGCCCCTTCATCGATTCGCTGGTCGAGAAACTTAAGGCAGCGGCCGAAGAGACCATTGAGCTCCACGGCGATAGCGTCGATTTCA
CCGCTTTGCAATTCGAGGTGGCGCAAGAAGTCGAACATTTGCGACTGTGGGATCGCCACGTCCGCGCGATCGAGCGTGAAGTGGAGCAGATCTATCAGCG
GGTGCATCCGTCCGATGCGCTTCGATCTATTCCTGGCATAGGGGCGACCTTGGCTCCGCTGCTCATCGGCGTACTCGGCTACGCGAAACGCTTCCGTAAC
GAAGATCACATACGCGGATTCTGCGGTATGTTTCCTACCAGAAGTTCGTCCGGTGGTATAGAGAAGCCCGGTCAAAGGCTGACAAAGAGTGGTAGTGATC
GCGTCAAGCGGGCGCTGTACATCGCTGCGGACGTTGCACGAAAGATCGATCCAGATCTTGCCGCCGTGTACTGGCGTCTTATGGTGAACAAAGGGCATCA
CCACAAGCAAGCCATCTGCGCAGTTGCGACGCGCTTGATCAACCGGATCTATCGCGTGTTGAAGACCGGCGAGCCGTACGTGCTTCGAGATCAGGAAGGT
AACTCGATTTCCGTCCAAGAGGGCAAACGTATCGTTGCTGCGCAATTCAAAGTGCCGCTCGAGGTCCGCCAGTCTCGCCGCAACCAGCCTATGCCCGAAC
CGGCGTAGAGCCCTGCTCCGAAGCCGCGAACATGCGTTGACAGTCGGTACGAGAT
AATTCGATAGCTTCTTGTCTGAATCGGGGTGCAGGACGTACGCCGAGGGGCAAGAGTATGAGGCCGAGCTTCTGTCGCTTCTGACTCGCCGTTCAACTCC
GCCCGCTCGCTCGCTGGTACTCTTGCCTGCGGGCACCGGACCCGGCGACCTTAAGAACGTGGGAGAGCCCGCAAAGTTCGTCCCGACGATGTGAAGCCCA
TGGTTGCGGGGTTCGGGCTGGCGCAGGCAAGAGTAACGAGATGGTGGCGCATGAATCTGCGAGTTTCAAGCGGCCACGAATGAAACACCTGGCAGTGCTG
CCCAGCGACGAGCCCTCTGATTCGTTGATAAGGAGAACAATAACTCATGGCTTCTATCAGCAATGCACCCGTGCGTCACCGGACCGTCGGCATCGATCTG
GCAATAAGTGCAGTTCAGGTCGCGCAGATCTTCGATGATGGACGTGCAATTGGCAAACCGATCCGCTTCCGTTTGACGTCAACCGACCTCAGGCGTTTCG
TGTCAGCCATCAAGAGCGGCGTCGGCGCCGATACGCCGATCACAGCCGTGATGGAGCCAACCGGCATGGCATGGTTTCCGGTGGCCAACTGGCTGCAGCG
TGCCGGAATCAAAGTCATTCGGGTCAAGGGTCAGCGCGTGAAGGCGTTACGCAAATACCTCAGCGAGCATGCCAAGACCGACGCGGCCGATGCACATGTA
TTGGGCGCAATACCCGGCTTTGGTGGCCGTGGCCTCGACCCAGTTCATGTGCCAGGGCCCGAGCAACATTCACTACAACGACTGACCAAACAGCGTCACC
GCTATCAGGAGCTAGTGTGTTCCGCGCGGCGCCGCGTTCTTGACCTCATCCGCTGGGCGTGCCCGGCGCTTGAGCCTGTGTTGCCCGATACGGTCACGCA
ACTCACGCTAGCAATTCTCGGCGAGCTGTTGGATCCGCGCAAGGTCGTAGCCATGCGACGCGATGTGCTCGCCCGATTCCTGTCACAACACGCCTCAGGG
AATCATCCCAAGAGCGGCCCCTTCATCGATTCGCTGGTCGAGAAACTTAAGGCAGCGGCCGAAGAGACCATTGAGCTCCACGGCGATAGCGTCGATTTCA
CCGCTTTGCAATTCGAGGTGGCGCAAGAAGTCGAACATTTGCGACTGTGGGATCGCCACGTCCGCGCGATCGAGCGTGAAGTGGAGCAGATCTATCAGCG
GGTGCATCCGTCCGATGCGCTTCGATCTATTCCTGGCATAGGGGCGACCTTGGCTCCGCTGCTCATCGGCGTACTCGGCTACGCGAAACGCTTCCGTAAC
GAAGATCACATACGCGGATTCTGCGGTATGTTTCCTACCAGAAGTTCGTCCGGTGGTATAGAGAAGCCCGGTCAAAGGCTGACAAAGAGTGGTAGTGATC
GCGTCAAGCGGGCGCTGTACATCGCTGCGGACGTTGCACGAAAGATCGATCCAGATCTTGCCGCCGTGTACTGGCGTCTTATGGTGAACAAAGGGCATCA
CCACAAGCAAGCCATCTGCGCAGTTGCGACGCGCTTGATCAACCGGATCTATCGCGTGTTGAAGACCGGCGAGCCGTACGTGCTTCGAGATCAGGAAGGT
AACTCGATTTCCGTCCAAGAGGGCAAACGTATCGTTGCTGCGCAATTCAAAGTGCCGCTCGAGGTCCGCCAGTCTCGCCGCAACCAGCCTATGCCCGAAC
CGGCGTAGAGCCCTGCTCCGAAGCCGCGAACATGCGTTGACAGTCGGTACGAGAT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1362 bp | 453 aa | 447 | 1808 | + | No |
Chemistry : DEDD
ORF sequence :
MASISNAPVRHRTVGIDLAISAVQVAQIFDDGRAIGKPIRFRLTSTDLRRFVSAIKSGVGADTPITAVMEPTGMAWFPVANWLQRAGIKVIRVKGQRVKA
LRKYLSEHAKTDAADAHVLGAIPGFGGRGLDPVHVPGPEQHSLQRLTKQRHRYQELVCSARRRVLDLIRWACPALEPVLPDTVTQLTLAILGELLDPRKV
VAMRRDVLARFLSQHASGNHPKSGPFIDSLVEKLKAAAEETIELHGDSVDFTALQFEVAQEVEHLRLWDRHVRAIEREVEQIYQRVHPSDALRSIPGIGA
TLAPLLIGVLGYAKRFRNEDHIRGFCGMFPTRSSSGGIEKPGQRLTKSGSDRVKRALYIAADVARKIDPDLAAVYWRLMVNKGHHHKQAICAVATRLINR
IYRVLKTGEPYVLRDQEGNSISVQEGKRIVAAQFKVPLEVRQSRRNQPMPEPA
LRKYLSEHAKTDAADAHVLGAIPGFGGRGLDPVHVPGPEQHSLQRLTKQRHRYQELVCSARRRVLDLIRWACPALEPVLPDTVTQLTLAILGELLDPRKV
VAMRRDVLARFLSQHASGNHPKSGPFIDSLVEKLKAAAEETIELHGDSVDFTALQFEVAQEVEHLRLWDRHVRAIEREVEQIYQRVHPSDALRSIPGIGA
TLAPLLIGVLGYAKRFRNEDHIRGFCGMFPTRSSSGGIEKPGQRLTKSGSDRVKRALYIAADVARKIDPDLAAVYWRLMVNKGHHHKQAICAVATRLINR
IYRVLKTGEPYVLRDQEGNSISVQEGKRIVAAQFKVPLEVRQSRRNQPMPEPA
Blast result :
Comments
ISBmu4 is 44% aa similar to ISCth7.
This IS disrupt a copy of ISBmu1.
This IS disrupt a copy of ISBmu1.
References
1] ISfinder submission (2018)
2] Ohtsubo,Y., Yamashita,A., Kurokawa,K., Takami,H., Yuhara,S., Nishiyama,E., Endo,R., Miyazaki,R., Ono,A., Yano,K., Ito,M., Sota,M., Yuji,N., Hattori,M. and Tsuda,M. (2007) Direct GenBank submission.
2] Ohtsubo,Y., Yamashita,A., Kurokawa,K., Takami,H., Yuhara,S., Nishiyama,E., Endo,R., Miyazaki,R., Ono,A., Yano,K., Ito,M., Sota,M., Yuji,N., Hattori,M. and Tsuda,M. (2007) Direct GenBank submission.