ISBmu4

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AP009385 ND Burkholderia multivorans
Burkholderia multivorans ATCC 17616
DNA section
IS Length : 1855 bp

Ends


Left end : GGTATCTATAGCAGTGCGGGGTTGACGCCGAGGGGCAAGTCGATGATAGGGCTTCAGGGCGCCTCGACGAAGTGATCGCGGGTCGACCTTCGCACCGTCG
Right end : CGCTCGAGGTCCGCCAGTCTCGCCGCAACCAGCCTATGCCCGAACCGGCGTAGAGCCCTGCTCCGAAGCCGCGAACATGCGTTGACAGTCGGTACGAGAT

Insertion site


Left flankDirect repeatRight flankDR Length
CGGCAAAAGCCACTTGGCCCAG2

DNA sequence

GGTATCTATAGCAGTGCGGGGTTGACGCCGAGGGGCAAGTCGATGATAGGGCTTCAGGGCGCCTCGACGAAGTGATCGCGGGTCGACCTTCGCACCGTCG
AATTCGATAGCTTCTTGTCTGAATCGGGGTGCAGGACGTACGCCGAGGGGCAAGAGTATGAGGCCGAGCTTCTGTCGCTTCTGACTCGCCGTTCAACTCC
GCCCGCTCGCTCGCTGGTACTCTTGCCTGCGGGCACCGGACCCGGCGACCTTAAGAACGTGGGAGAGCCCGCAAAGTTCGTCCCGACGATGTGAAGCCCA
TGGTTGCGGGGTTCGGGCTGGCGCAGGCAAGAGTAACGAGATGGTGGCGCATGAATCTGCGAGTTTCAAGCGGCCACGAATGAAACACCTGGCAGTGCTG
CCCAGCGACGAGCCCTCTGATTCGTTGATAAGGAGAACAATAACTCATGGCTTCTATCAGCAATGCACCCGTGCGTCACCGGACCGTCGGCATCGATCTG
GCAATAAGTGCAGTTCAGGTCGCGCAGATCTTCGATGATGGACGTGCAATTGGCAAACCGATCCGCTTCCGTTTGACGTCAACCGACCTCAGGCGTTTCG
TGTCAGCCATCAAGAGCGGCGTCGGCGCCGATACGCCGATCACAGCCGTGATGGAGCCAACCGGCATGGCATGGTTTCCGGTGGCCAACTGGCTGCAGCG
TGCCGGAATCAAAGTCATTCGGGTCAAGGGTCAGCGCGTGAAGGCGTTACGCAAATACCTCAGCGAGCATGCCAAGACCGACGCGGCCGATGCACATGTA
TTGGGCGCAATACCCGGCTTTGGTGGCCGTGGCCTCGACCCAGTTCATGTGCCAGGGCCCGAGCAACATTCACTACAACGACTGACCAAACAGCGTCACC
GCTATCAGGAGCTAGTGTGTTCCGCGCGGCGCCGCGTTCTTGACCTCATCCGCTGGGCGTGCCCGGCGCTTGAGCCTGTGTTGCCCGATACGGTCACGCA
ACTCACGCTAGCAATTCTCGGCGAGCTGTTGGATCCGCGCAAGGTCGTAGCCATGCGACGCGATGTGCTCGCCCGATTCCTGTCACAACACGCCTCAGGG
AATCATCCCAAGAGCGGCCCCTTCATCGATTCGCTGGTCGAGAAACTTAAGGCAGCGGCCGAAGAGACCATTGAGCTCCACGGCGATAGCGTCGATTTCA
CCGCTTTGCAATTCGAGGTGGCGCAAGAAGTCGAACATTTGCGACTGTGGGATCGCCACGTCCGCGCGATCGAGCGTGAAGTGGAGCAGATCTATCAGCG
GGTGCATCCGTCCGATGCGCTTCGATCTATTCCTGGCATAGGGGCGACCTTGGCTCCGCTGCTCATCGGCGTACTCGGCTACGCGAAACGCTTCCGTAAC
GAAGATCACATACGCGGATTCTGCGGTATGTTTCCTACCAGAAGTTCGTCCGGTGGTATAGAGAAGCCCGGTCAAAGGCTGACAAAGAGTGGTAGTGATC
GCGTCAAGCGGGCGCTGTACATCGCTGCGGACGTTGCACGAAAGATCGATCCAGATCTTGCCGCCGTGTACTGGCGTCTTATGGTGAACAAAGGGCATCA
CCACAAGCAAGCCATCTGCGCAGTTGCGACGCGCTTGATCAACCGGATCTATCGCGTGTTGAAGACCGGCGAGCCGTACGTGCTTCGAGATCAGGAAGGT
AACTCGATTTCCGTCCAAGAGGGCAAACGTATCGTTGCTGCGCAATTCAAAGTGCCGCTCGAGGTCCGCCAGTCTCGCCGCAACCAGCCTATGCCCGAAC
CGGCGTAGAGCCCTGCTCCGAAGCCGCGAACATGCGTTGACAGTCGGTACGAGAT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1362 bp453 aa4471808+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MASISNAPVRHRTVGIDLAISAVQVAQIFDDGRAIGKPIRFRLTSTDLRRFVSAIKSGVGADTPITAVMEPTGMAWFPVANWLQRAGIKVIRVKGQRVKA
LRKYLSEHAKTDAADAHVLGAIPGFGGRGLDPVHVPGPEQHSLQRLTKQRHRYQELVCSARRRVLDLIRWACPALEPVLPDTVTQLTLAILGELLDPRKV
VAMRRDVLARFLSQHASGNHPKSGPFIDSLVEKLKAAAEETIELHGDSVDFTALQFEVAQEVEHLRLWDRHVRAIEREVEQIYQRVHPSDALRSIPGIGA
TLAPLLIGVLGYAKRFRNEDHIRGFCGMFPTRSSSGGIEKPGQRLTKSGSDRVKRALYIAADVARKIDPDLAAVYWRLMVNKGHHHKQAICAVATRLINR
IYRVLKTGEPYVLRDQEGNSISVQEGKRIVAAQFKVPLEVRQSRRNQPMPEPA

 

Blast result :
Comments
ISBmu4 is 44% aa similar to ISCth7.
This IS disrupt a copy of ISBmu1.
References
1] ISfinder submission (2018)
2] Ohtsubo,Y., Yamashita,A., Kurokawa,K., Takami,H., Yuhara,S., Nishiyama,E., Endo,R., Miyazaki,R., Ono,A., Yano,K., Ito,M., Sota,M., Yuji,N., Hattori,M. and Tsuda,M. (2007) Direct GenBank submission.