ISBli18
- Family IS1380
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP014869 | ND | Brevibacterium linens | Brevibacterium linens BS258 Brevibacterium epidermidis BS258 |
DNA section
IS Length : 1713 bp
Ends
IR Length : 15
IRL : CCTTGATCCACCGATGCCAGCAGCCAGATCAAGCCACGCGTGAAATGGAA
IRR : CCTTGATCCACCGATCTGCTTGAGGGCGCGGGGCTCGGCTGGATTCGAGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGGCATTTGC | CTAAG | CGTCTCATGC | 5 |
CTGTATTTGT | CTTAA | CTCTAGCGAC | 5 |
DNA sequence
CCTTGATCCACCGATGCCAGCAGCCAGATCAAGCCACGCGTGAAATGGAAATGCCCCTCCTGAACTGGGAAAATGGTGATGTTCGAAGTCAACATTCCCG
GTCAAGAAAGGGGCACCTCTCAGGTGCTATTCAACCACACACCCACGTCGGTGTCTCATTCCTTCGACGATGGGAATCTCACCGCGACCACCGGGCTGGT
CCCGATCATGGGCCTGGCCCAAAAGGCTGGCCTGCCCGAACTCGCCGACGACCGTCTGACCGTGACCACTACCGGCGCTGACAAGGGAGCGAACCCGGCA
CCGAAACTGGCCACCCTGGTCGCGGGAATGGCCGCCGGGGCCGACTCGATCGATGACATGAACATCCTCCGCCACGGCGGCATGAAACACCTCTTCGACC
GCGTCTACGCCCCTTCGACGCTGGGATCGTTCCTCCGCTCGTTCGCTTTCGGCCACGTCAGGCAACTCGATGCGATCTCCGCCCGCTTCCTGACCAACCT
CAACGCGCACACACCACTGCTGCCAACCAGCGAAGACACCAGACAATCGGCGATGATTTTCGTCGACATCGACGACACCGTCATCGATGTCCACTCCGCG
TCGAAACAGGGAGCCGGGTTCGGCTACCAAGGCAGCCGCGGACTCAACGCACTGTTCGCAACCGCGTCGACTGGCGACTCCGGCCAGATCATCGTCGGCC
AGCGCCTGCGCAAAGGCTCAACGTCGTCAGCGCGGGGTGCTGACAAGTTCGTCTCCGATGCCGTGGCAACGACGGCCCGAATCGGCTCCGGTGCCCCGGT
GCTGGTGCGTGCTGATTCGGCGTACTATTCCTCATCCGTGGCCAAGGCCGCTCGGGACGCCGGGGCTGATGTGTCGATCACGGTGCGCATGGACACAAGG
ATCAAGGCAGCGATCGCAGCGATCAGCGACGACGCATGGACGGGCATCGAATACCCCGAAGCGATCTATGACGAGGACTCCGGGGCCTGGATCAGCAAGG
CTGAAGTCGCTGAGGTCCCGTTCACCGCGTTCACCTCGAAGAAGAATGCGCTGCAGGCTACGGGGCGTTTGGTGGTCCGCCGCATCCCGGAGCTCAATGA
GGCCAAACGGACTGCCGGGCAGGACCCATTGTTCGATCTGTTCCGGCATCACGCGTTTTTCACCACCGTCGACCGGGACCGTTTCGACACCGTCATCGCT
GATCAAATCCATCGCAGACACGCGATCATCGAGCAGATCAATGCGGAGCTGAAGAATGGTGCTCTGGCGCATATGCCCTCCGGGGTGTTCGACGCCAATG
CCGCCTGGGTCGCGATCGCAGCGATCACTCACAACCTGTTGCGGGCTGCTGCCGGACTCCTTGGTGGGCGGATGAGCAAAGTGCGCGCCCAAACATTGCG
GACCCGGATCATCGGTGTCCCGGCGCGGATCGCTCACCGGGCCAGGAAGCTAATTCTGCACCTACCCAGGGCGTGGCCGTGGGCGCAGGAATTCTCACGA
CTCTGGCAAGCAGCGCTGAGTCCACCAAGGACAGTATTGTCCTGACAGATTCGCTCTTGTTCGAGCACGACGCCGCAGGGTCTAGAGGAGACCTTGGGAA
ACATTTGTGGAAGAGACCGGTGAGAGACCGGGACACTACTTCCTGCCCACTCATCGCGATCGCACTCGAATCCAGCCGAGCCCCGCGCCCTCAAGCAGAT
CGGTGGATCAAGG
GTCAAGAAAGGGGCACCTCTCAGGTGCTATTCAACCACACACCCACGTCGGTGTCTCATTCCTTCGACGATGGGAATCTCACCGCGACCACCGGGCTGGT
CCCGATCATGGGCCTGGCCCAAAAGGCTGGCCTGCCCGAACTCGCCGACGACCGTCTGACCGTGACCACTACCGGCGCTGACAAGGGAGCGAACCCGGCA
CCGAAACTGGCCACCCTGGTCGCGGGAATGGCCGCCGGGGCCGACTCGATCGATGACATGAACATCCTCCGCCACGGCGGCATGAAACACCTCTTCGACC
GCGTCTACGCCCCTTCGACGCTGGGATCGTTCCTCCGCTCGTTCGCTTTCGGCCACGTCAGGCAACTCGATGCGATCTCCGCCCGCTTCCTGACCAACCT
CAACGCGCACACACCACTGCTGCCAACCAGCGAAGACACCAGACAATCGGCGATGATTTTCGTCGACATCGACGACACCGTCATCGATGTCCACTCCGCG
TCGAAACAGGGAGCCGGGTTCGGCTACCAAGGCAGCCGCGGACTCAACGCACTGTTCGCAACCGCGTCGACTGGCGACTCCGGCCAGATCATCGTCGGCC
AGCGCCTGCGCAAAGGCTCAACGTCGTCAGCGCGGGGTGCTGACAAGTTCGTCTCCGATGCCGTGGCAACGACGGCCCGAATCGGCTCCGGTGCCCCGGT
GCTGGTGCGTGCTGATTCGGCGTACTATTCCTCATCCGTGGCCAAGGCCGCTCGGGACGCCGGGGCTGATGTGTCGATCACGGTGCGCATGGACACAAGG
ATCAAGGCAGCGATCGCAGCGATCAGCGACGACGCATGGACGGGCATCGAATACCCCGAAGCGATCTATGACGAGGACTCCGGGGCCTGGATCAGCAAGG
CTGAAGTCGCTGAGGTCCCGTTCACCGCGTTCACCTCGAAGAAGAATGCGCTGCAGGCTACGGGGCGTTTGGTGGTCCGCCGCATCCCGGAGCTCAATGA
GGCCAAACGGACTGCCGGGCAGGACCCATTGTTCGATCTGTTCCGGCATCACGCGTTTTTCACCACCGTCGACCGGGACCGTTTCGACACCGTCATCGCT
GATCAAATCCATCGCAGACACGCGATCATCGAGCAGATCAATGCGGAGCTGAAGAATGGTGCTCTGGCGCATATGCCCTCCGGGGTGTTCGACGCCAATG
CCGCCTGGGTCGCGATCGCAGCGATCACTCACAACCTGTTGCGGGCTGCTGCCGGACTCCTTGGTGGGCGGATGAGCAAAGTGCGCGCCCAAACATTGCG
GACCCGGATCATCGGTGTCCCGGCGCGGATCGCTCACCGGGCCAGGAAGCTAATTCTGCACCTACCCAGGGCGTGGCCGTGGGCGCAGGAATTCTCACGA
CTCTGGCAAGCAGCGCTGAGTCCACCAAGGACAGTATTGTCCTGACAGATTCGCTCTTGTTCGAGCACGACGCCGCAGGGTCTAGAGGAGACCTTGGGAA
ACATTTGTGGAAGAGACCGGTGAGAGACCGGGACACTACTTCCTGCCCACTCATCGCGATCGCACTCGAATCCAGCCGAGCCCCGCGCCCTCAAGCAGAT
CGGTGGATCAAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1467 bp | 488 aa | 79 | 1545 | + | No |
Chemistry : DDE
ORF sequence :
MFEVNIPGQERGTSQVLFNHTPTSVSHSFDDGNLTATTGLVPIMGLAQKAGLPELADDRLTVTTTGADKGANPAPKLATLVAGMAAGADSIDDMNILRHG
GMKHLFDRVYAPSTLGSFLRSFAFGHVRQLDAISARFLTNLNAHTPLLPTSEDTRQSAMIFVDIDDTVIDVHSASKQGAGFGYQGSRGLNALFATASTGD
SGQIIVGQRLRKGSTSSARGADKFVSDAVATTARIGSGAPVLVRADSAYYSSSVAKAARDAGADVSITVRMDTRIKAAIAAISDDAWTGIEYPEAIYDED
SGAWISKAEVAEVPFTAFTSKKNALQATGRLVVRRIPELNEAKRTAGQDPLFDLFRHHAFFTTVDRDRFDTVIADQIHRRHAIIEQINAELKNGALAHMP
SGVFDANAAWVAIAAITHNLLRAAAGLLGGRMSKVRAQTLRTRIIGVPARIAHRARKLILHLPRAWPWAQEFSRLWQAALSPPRTVLS
GMKHLFDRVYAPSTLGSFLRSFAFGHVRQLDAISARFLTNLNAHTPLLPTSEDTRQSAMIFVDIDDTVIDVHSASKQGAGFGYQGSRGLNALFATASTGD
SGQIIVGQRLRKGSTSSARGADKFVSDAVATTARIGSGAPVLVRADSAYYSSSVAKAARDAGADVSITVRMDTRIKAAIAAISDDAWTGIEYPEAIYDED
SGAWISKAEVAEVPFTAFTSKKNALQATGRLVVRRIPELNEAKRTAGQDPLFDLFRHHAFFTTVDRDRFDTVIADQIHRRHAIIEQINAELKNGALAHMP
SGVFDANAAWVAIAAITHNLLRAAAGLLGGRMSKVRAQTLRTRIIGVPARIAHRARKLILHLPRAWPWAQEFSRLWQAALSPPRTVLS
Blast result :
Comments
ISBli18 is 93% aa similar to ISBli4.
References
1] ISfinder annotation (2018)
2] Zhu,Y. and Sun,C. (2016) Direct GenBank submission.
2] Zhu,Y. and Sun,C. (2016) Direct GenBank submission.