ISBli18

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP014869 ND Brevibacterium linens
Brevibacterium linens BS258
Brevibacterium epidermidis BS258
DNA section
IS Length : 1713 bp

Ends


IR Length : 15

IRL : CCTTGATCCACCGATGCCAGCAGCCAGATCAAGCCACGCGTGAAATGGAA
IRR : CCTTGATCCACCGATCTGCTTGAGGGCGCGGGGCTCGGCTGGATTCGAGT

Insertion site


Left flankDirect repeatRight flankDR Length
TGGCATTTGCCTAAGCGTCTCATGC5
CTGTATTTGTCTTAACTCTAGCGAC5

DNA sequence

CCTTGATCCACCGATGCCAGCAGCCAGATCAAGCCACGCGTGAAATGGAAATGCCCCTCCTGAACTGGGAAAATGGTGATGTTCGAAGTCAACATTCCCG
GTCAAGAAAGGGGCACCTCTCAGGTGCTATTCAACCACACACCCACGTCGGTGTCTCATTCCTTCGACGATGGGAATCTCACCGCGACCACCGGGCTGGT
CCCGATCATGGGCCTGGCCCAAAAGGCTGGCCTGCCCGAACTCGCCGACGACCGTCTGACCGTGACCACTACCGGCGCTGACAAGGGAGCGAACCCGGCA
CCGAAACTGGCCACCCTGGTCGCGGGAATGGCCGCCGGGGCCGACTCGATCGATGACATGAACATCCTCCGCCACGGCGGCATGAAACACCTCTTCGACC
GCGTCTACGCCCCTTCGACGCTGGGATCGTTCCTCCGCTCGTTCGCTTTCGGCCACGTCAGGCAACTCGATGCGATCTCCGCCCGCTTCCTGACCAACCT
CAACGCGCACACACCACTGCTGCCAACCAGCGAAGACACCAGACAATCGGCGATGATTTTCGTCGACATCGACGACACCGTCATCGATGTCCACTCCGCG
TCGAAACAGGGAGCCGGGTTCGGCTACCAAGGCAGCCGCGGACTCAACGCACTGTTCGCAACCGCGTCGACTGGCGACTCCGGCCAGATCATCGTCGGCC
AGCGCCTGCGCAAAGGCTCAACGTCGTCAGCGCGGGGTGCTGACAAGTTCGTCTCCGATGCCGTGGCAACGACGGCCCGAATCGGCTCCGGTGCCCCGGT
GCTGGTGCGTGCTGATTCGGCGTACTATTCCTCATCCGTGGCCAAGGCCGCTCGGGACGCCGGGGCTGATGTGTCGATCACGGTGCGCATGGACACAAGG
ATCAAGGCAGCGATCGCAGCGATCAGCGACGACGCATGGACGGGCATCGAATACCCCGAAGCGATCTATGACGAGGACTCCGGGGCCTGGATCAGCAAGG
CTGAAGTCGCTGAGGTCCCGTTCACCGCGTTCACCTCGAAGAAGAATGCGCTGCAGGCTACGGGGCGTTTGGTGGTCCGCCGCATCCCGGAGCTCAATGA
GGCCAAACGGACTGCCGGGCAGGACCCATTGTTCGATCTGTTCCGGCATCACGCGTTTTTCACCACCGTCGACCGGGACCGTTTCGACACCGTCATCGCT
GATCAAATCCATCGCAGACACGCGATCATCGAGCAGATCAATGCGGAGCTGAAGAATGGTGCTCTGGCGCATATGCCCTCCGGGGTGTTCGACGCCAATG
CCGCCTGGGTCGCGATCGCAGCGATCACTCACAACCTGTTGCGGGCTGCTGCCGGACTCCTTGGTGGGCGGATGAGCAAAGTGCGCGCCCAAACATTGCG
GACCCGGATCATCGGTGTCCCGGCGCGGATCGCTCACCGGGCCAGGAAGCTAATTCTGCACCTACCCAGGGCGTGGCCGTGGGCGCAGGAATTCTCACGA
CTCTGGCAAGCAGCGCTGAGTCCACCAAGGACAGTATTGTCCTGACAGATTCGCTCTTGTTCGAGCACGACGCCGCAGGGTCTAGAGGAGACCTTGGGAA
ACATTTGTGGAAGAGACCGGTGAGAGACCGGGACACTACTTCCTGCCCACTCATCGCGATCGCACTCGAATCCAGCCGAGCCCCGCGCCCTCAAGCAGAT
CGGTGGATCAAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1467 bp488 aa791545+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MFEVNIPGQERGTSQVLFNHTPTSVSHSFDDGNLTATTGLVPIMGLAQKAGLPELADDRLTVTTTGADKGANPAPKLATLVAGMAAGADSIDDMNILRHG
GMKHLFDRVYAPSTLGSFLRSFAFGHVRQLDAISARFLTNLNAHTPLLPTSEDTRQSAMIFVDIDDTVIDVHSASKQGAGFGYQGSRGLNALFATASTGD
SGQIIVGQRLRKGSTSSARGADKFVSDAVATTARIGSGAPVLVRADSAYYSSSVAKAARDAGADVSITVRMDTRIKAAIAAISDDAWTGIEYPEAIYDED
SGAWISKAEVAEVPFTAFTSKKNALQATGRLVVRRIPELNEAKRTAGQDPLFDLFRHHAFFTTVDRDRFDTVIADQIHRRHAIIEQINAELKNGALAHMP
SGVFDANAAWVAIAAITHNLLRAAAGLLGGRMSKVRAQTLRTRIIGVPARIAHRARKLILHLPRAWPWAQEFSRLWQAALSPPRTVLS

 

Blast result :
Comments
ISBli18 is 93% aa similar to ISBli4.
References
1] ISfinder annotation (2018)
2] Zhu,Y. and Sun,C. (2016) Direct GenBank submission.