ISPye54

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP020447.2 ND Paracoccus yeei
Paracoccus yeei
Paracoccus yeei FDAARGOS_252
Paracoccus yeei CCUG 32053
DNA section
IS Length : 1112 bp

Ends


IR Length : 19/26

IRL : GGTGTATTCACAGACGAAGTGCAAATGCCGAAGTAATACAGGTATTTGCA
IRR : TGTGAACTCACGCCGAAGCGCAACTCGTTGCTTTTACTTTATTCCAGTCT

Insertion site


Left flankDirect repeatRight flankDR Length
gttgtagaattcgggtgggg0
ctgtggtcggtcgggggacg0
cgtccaagggtagtgcgtcc0

DNA sequence

GGTGTATTCACAGACGAAGTGCAAATGCCGAAGTAATACAGGTATTTGCATCGAGGTTGGCGAATGGCTTCCCACTACCAGCACCTGAGTTTCGAAGAAC
GTCGAAAGATTGCCAAATGGCGCGAGGGCAAGATGCCGGTGCCGGAAATCGCGGACCGCCTTTCGCGTCCACCCTCGACGATCTATCGGGAACTTAAGCG
GAACACGTATCTGGACGCCGAGCTTGCGCAGTATAGCGGCTACTATGCGGTGACGGCTCAGGACAAGTACGAGCGCCGCCGTGCGGTTCATCGAAAGCTG
GTCGCACACCCGGAATTGAAAGCAGCAGTCGAAGATGCGCTCAAGGCGGGTTGGTCTCCCGAGCAGATCGCTGGCCGTATGCGGCTTGAGCAGCACCGCA
TCTGCGTCAGCCATGAAACGATCTACCGCTTCGCCTATTCCAAGCTTGGCATTGAGGAAGCCTTCTATCGCCACCTGCCAGAGCATCGCAGGCGCCGCAG
GCCGCGACACCACCGGCGACATCAGCGCAGTCACATTCAGGACAGCCAGAGCTTGTGTCACCGGCCTCTGATGGTTGCCGAGCGTCAGCAGTTCGGGCAT
TGGGAATGCGATCTGATGATGTTCCGCAAGGAAAATGGCAAGGTGAATGTCACCTCGCTGGTCGAGCGGGTCAGTCGGTTTACCGTTGCGATGCGCAATG
AGGATCGCCACTCCGAGCCAATCATGGAAGCGCTGATCGCAGGGCTCGCTCCGCTACCCGCCGAGGCACGCCAGTCGATCACCTTCGACCGCGGCACCGA
GTTTTCTGCCTGGCGACGGTTGACGGACGGGATCGGTGCCGTCAGCTGGTTCTGCGACCCGCAGGCGCCATGGCAAAAGGGAACGGTCGAGAACACGAAT
GGCAGGCTGAGAAAGCACCTGCCCCGCTCGACCGAACCGACGGCTCTGACAAATAGATATTTGAGGTCGATTTGCCAGAGCCTCAATTCCACTCCTCGCA
AGTGTCTCGGCTACCGGACACCTGCGGAGGTCTTCGAAAGCAACCTGATGGCCATCAGAAACAGACTGGAATAAAGTAAAAGCAACGAGTTGCGCTTCGG
CGTGAGTTCACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1011 bp336 aa641074+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MASHYQHLSFEERRKIAKWREGKMPVPEIADRLSRPPSTIYRELKRNTYLDAELAQYSGYYAVTAQDKYERRRAVHRKLVAHPELKAAVEDALKAGWSPE
QIAGRMRLEQHRICVSHETIYRFAYSKLGIEEAFYRHLPEHRRRRRPRHHRRHQRSHIQDSQSLCHRPLMVAERQQFGHWECDLMMFRKENGKVNVTSLV
ERVSRFTVAMRNEDRHSEPIMEALIAGLAPLPAEARQSITFDRGTEFSAWRRLTDGIGAVSWFCDPQAPWQKGTVENTNGRLRKHLPRSTEPTALTNRYL
RSICQSLNSTPRKCLGYRTPAEVFESNLMAIRNRLE

 

Blast result :
Comments
ISPye54 is 78% aa similar to ISRssp4.
ISPye54 was identified by in silico sequence analysis of Paracoccus yeei strains: CCUG 32053 (3 copies of ISPye54 and isoforms) and FDAARGOS_252 (1 isoform).
References
1] Chmielowska C., Szuplewska M., Bartosik D. (2018) Direct submission.
2] Goldberg,B., Campos,J., Tallon,L., Sadzewicz,L., Sengamalay,N., Ott,S., Godinez,A., Nagaraj,S., Vavikolanu,K., Aluvathingal,J., Nadendla,S. and Sichtig,H. (2017) Direct GenBank submission.