ISPye54
- Family IS30
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP020447.2 | ND | Paracoccus yeei | Paracoccus yeei Paracoccus yeei FDAARGOS_252 Paracoccus yeei CCUG 32053 |
DNA section
IS Length : 1112 bp
Ends
IR Length : 19/26
IRL : GGTGTATTCACAGACGAAGTGCAAATGCCGAAGTAATACAGGTATTTGCA
IRR : TGTGAACTCACGCCGAAGCGCAACTCGTTGCTTTTACTTTATTCCAGTCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
gttgtagaat | tcgggtgggg | 0 | |
ctgtggtcgg | tcgggggacg | 0 | |
cgtccaaggg | tagtgcgtcc | 0 |
DNA sequence
GGTGTATTCACAGACGAAGTGCAAATGCCGAAGTAATACAGGTATTTGCATCGAGGTTGGCGAATGGCTTCCCACTACCAGCACCTGAGTTTCGAAGAAC
GTCGAAAGATTGCCAAATGGCGCGAGGGCAAGATGCCGGTGCCGGAAATCGCGGACCGCCTTTCGCGTCCACCCTCGACGATCTATCGGGAACTTAAGCG
GAACACGTATCTGGACGCCGAGCTTGCGCAGTATAGCGGCTACTATGCGGTGACGGCTCAGGACAAGTACGAGCGCCGCCGTGCGGTTCATCGAAAGCTG
GTCGCACACCCGGAATTGAAAGCAGCAGTCGAAGATGCGCTCAAGGCGGGTTGGTCTCCCGAGCAGATCGCTGGCCGTATGCGGCTTGAGCAGCACCGCA
TCTGCGTCAGCCATGAAACGATCTACCGCTTCGCCTATTCCAAGCTTGGCATTGAGGAAGCCTTCTATCGCCACCTGCCAGAGCATCGCAGGCGCCGCAG
GCCGCGACACCACCGGCGACATCAGCGCAGTCACATTCAGGACAGCCAGAGCTTGTGTCACCGGCCTCTGATGGTTGCCGAGCGTCAGCAGTTCGGGCAT
TGGGAATGCGATCTGATGATGTTCCGCAAGGAAAATGGCAAGGTGAATGTCACCTCGCTGGTCGAGCGGGTCAGTCGGTTTACCGTTGCGATGCGCAATG
AGGATCGCCACTCCGAGCCAATCATGGAAGCGCTGATCGCAGGGCTCGCTCCGCTACCCGCCGAGGCACGCCAGTCGATCACCTTCGACCGCGGCACCGA
GTTTTCTGCCTGGCGACGGTTGACGGACGGGATCGGTGCCGTCAGCTGGTTCTGCGACCCGCAGGCGCCATGGCAAAAGGGAACGGTCGAGAACACGAAT
GGCAGGCTGAGAAAGCACCTGCCCCGCTCGACCGAACCGACGGCTCTGACAAATAGATATTTGAGGTCGATTTGCCAGAGCCTCAATTCCACTCCTCGCA
AGTGTCTCGGCTACCGGACACCTGCGGAGGTCTTCGAAAGCAACCTGATGGCCATCAGAAACAGACTGGAATAAAGTAAAAGCAACGAGTTGCGCTTCGG
CGTGAGTTCACA
GTCGAAAGATTGCCAAATGGCGCGAGGGCAAGATGCCGGTGCCGGAAATCGCGGACCGCCTTTCGCGTCCACCCTCGACGATCTATCGGGAACTTAAGCG
GAACACGTATCTGGACGCCGAGCTTGCGCAGTATAGCGGCTACTATGCGGTGACGGCTCAGGACAAGTACGAGCGCCGCCGTGCGGTTCATCGAAAGCTG
GTCGCACACCCGGAATTGAAAGCAGCAGTCGAAGATGCGCTCAAGGCGGGTTGGTCTCCCGAGCAGATCGCTGGCCGTATGCGGCTTGAGCAGCACCGCA
TCTGCGTCAGCCATGAAACGATCTACCGCTTCGCCTATTCCAAGCTTGGCATTGAGGAAGCCTTCTATCGCCACCTGCCAGAGCATCGCAGGCGCCGCAG
GCCGCGACACCACCGGCGACATCAGCGCAGTCACATTCAGGACAGCCAGAGCTTGTGTCACCGGCCTCTGATGGTTGCCGAGCGTCAGCAGTTCGGGCAT
TGGGAATGCGATCTGATGATGTTCCGCAAGGAAAATGGCAAGGTGAATGTCACCTCGCTGGTCGAGCGGGTCAGTCGGTTTACCGTTGCGATGCGCAATG
AGGATCGCCACTCCGAGCCAATCATGGAAGCGCTGATCGCAGGGCTCGCTCCGCTACCCGCCGAGGCACGCCAGTCGATCACCTTCGACCGCGGCACCGA
GTTTTCTGCCTGGCGACGGTTGACGGACGGGATCGGTGCCGTCAGCTGGTTCTGCGACCCGCAGGCGCCATGGCAAAAGGGAACGGTCGAGAACACGAAT
GGCAGGCTGAGAAAGCACCTGCCCCGCTCGACCGAACCGACGGCTCTGACAAATAGATATTTGAGGTCGATTTGCCAGAGCCTCAATTCCACTCCTCGCA
AGTGTCTCGGCTACCGGACACCTGCGGAGGTCTTCGAAAGCAACCTGATGGCCATCAGAAACAGACTGGAATAAAGTAAAAGCAACGAGTTGCGCTTCGG
CGTGAGTTCACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1011 bp | 336 aa | 64 | 1074 | + | No |
Chemistry : DDE
ORF sequence :
MASHYQHLSFEERRKIAKWREGKMPVPEIADRLSRPPSTIYRELKRNTYLDAELAQYSGYYAVTAQDKYERRRAVHRKLVAHPELKAAVEDALKAGWSPE
QIAGRMRLEQHRICVSHETIYRFAYSKLGIEEAFYRHLPEHRRRRRPRHHRRHQRSHIQDSQSLCHRPLMVAERQQFGHWECDLMMFRKENGKVNVTSLV
ERVSRFTVAMRNEDRHSEPIMEALIAGLAPLPAEARQSITFDRGTEFSAWRRLTDGIGAVSWFCDPQAPWQKGTVENTNGRLRKHLPRSTEPTALTNRYL
RSICQSLNSTPRKCLGYRTPAEVFESNLMAIRNRLE
QIAGRMRLEQHRICVSHETIYRFAYSKLGIEEAFYRHLPEHRRRRRPRHHRRHQRSHIQDSQSLCHRPLMVAERQQFGHWECDLMMFRKENGKVNVTSLV
ERVSRFTVAMRNEDRHSEPIMEALIAGLAPLPAEARQSITFDRGTEFSAWRRLTDGIGAVSWFCDPQAPWQKGTVENTNGRLRKHLPRSTEPTALTNRYL
RSICQSLNSTPRKCLGYRTPAEVFESNLMAIRNRLE
Blast result :
Comments
ISPye54 is 78% aa similar to ISRssp4.
ISPye54 was identified by in silico sequence analysis of Paracoccus yeei strains: CCUG 32053 (3 copies of ISPye54 and isoforms) and FDAARGOS_252 (1 isoform).
ISPye54 was identified by in silico sequence analysis of Paracoccus yeei strains: CCUG 32053 (3 copies of ISPye54 and isoforms) and FDAARGOS_252 (1 isoform).
References
1] Chmielowska C., Szuplewska M., Bartosik D. (2018) Direct submission.
2] Goldberg,B., Campos,J., Tallon,L., Sadzewicz,L., Sengamalay,N., Ott,S., Godinez,A., Nagaraj,S., Vavikolanu,K., Aluvathingal,J., Nadendla,S. and Sichtig,H. (2017) Direct GenBank submission.
2] Goldberg,B., Campos,J., Tallon,L., Sadzewicz,L., Sengamalay,N., Ott,S., Godinez,A., Nagaraj,S., Vavikolanu,K., Aluvathingal,J., Nadendla,S. and Sichtig,H. (2017) Direct GenBank submission.