ISCx1
- Family ISL3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
U21300 [P] | ND | Corynebacterium xerosis | Corynebacterium xerosis M82B plasmid pTP10 |
DNA section
IS Length : 536 bp
Ends
IR Length :
IRL : GGCTCTTCCGGTTTTAGAGTGCATTGATTAGTTCGCCGGGGGTTCGGGCG
IRR : TATCCCACCCCAGGCCTAATGACTTGGGTGCAGCGGCAACGCTCATCCGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GGCTCTTCCGGTTTTAGAGTGCATTGATTAGTTCGCCGGGGGTTCGGGCGTGGCACAAGATATTGGGGTCCTTGGCTTTGTAGGAAAAAGGTATCTAATC
CATCCGTACAAAACTAAGGACCTACTGTGCAGCCTAACGGAAATGTCATCGTCGATACCATCTGCCGCACCGCAAAACTAGGAACTACTATCACCGGTGC
CACAGAAAACGGTGACGTCACTGTTATTGAAGCCGAACCCGTCGAGCCGATCAATGAATGCCCTACCTGCGGGCAGCCTGGAGTATTCCGCGACCACGTC
ATCCGCAGCCTGGTCGATCTGCCCATCGTCGGCCACCCAACAACTTCATGTGCGCCTTCCACGCTACCGGTGCACCAACAAGCGTTGCTTGCAGAAGATC
TTCCGTGCTGGCCTTGCCTGCGCGCCCGACAATTCAAAGACCACGGACCAGGTGACCCACTGGATCCTGCAACGACTCTGCCTAAATCGGATGAGCGTTG
CCGCTGCACCCAAGTCATTAGGCCTGGGGTGGGATA
CATCCGTACAAAACTAAGGACCTACTGTGCAGCCTAACGGAAATGTCATCGTCGATACCATCTGCCGCACCGCAAAACTAGGAACTACTATCACCGGTGC
CACAGAAAACGGTGACGTCACTGTTATTGAAGCCGAACCCGTCGAGCCGATCAATGAATGCCCTACCTGCGGGCAGCCTGGAGTATTCCGCGACCACGTC
ATCCGCAGCCTGGTCGATCTGCCCATCGTCGGCCACCCAACAACTTCATGTGCGCCTTCCACGCTACCGGTGCACCAACAAGCGTTGCTTGCAGAAGATC
TTCCGTGCTGGCCTTGCCTGCGCGCCCGACAATTCAAAGACCACGGACCAGGTGACCCACTGGATCCTGCAACGACTCTGCCTAAATCGGATGAGCGTTG
CCGCTGCACCCAAGTCATTAGGCCTGGGGTGGGATA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
410 bp | 137 aa | 127 | 536 | + | Yes |
Description :
ORF sequence :
MQPNGNVIVDTICRTAKLGTTITGATENGDVTVIEAEPVEPINECPTCGQPGVFRDHVIRSLVDLPIVGHPTTLHVRLPRYRCTNKRCLQKIFRAGLACA
PDNSKTTDQVTHWILQRLCLNRMSVAAAPKSLGLGWD
PDNSKTTDQVTHWILQRLCLNRMSVAAAPKSLGLGWD
Blast result :Comments : Partial sequence
Comments
Tn5432 (4,524 bp), consisting of two identical copies of IS1249 flanking the erythromycin resistance gene ermCX (Tauch et al., 1995), contains a 536-bp fragment (ISCx1) similar to IS31831. A sequencing error around position 345 has been corrected to fuse two ORF (127-345 and 344-536) that display strong similarities (60 % identity) to the transposase of IS31831.
References