ISPye52
- Family IS3
- Group IS51
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Paracoccus yeei | Paracoccus yeei Paracoccus yeei CCUG 32053 |
DNA section
IS Length : 1323 bp
Ends
IR Length : 27
IRL : TGAAGCGCCCCGGGTTTACCGGAGAGTAAAACACTCGAAGGATGAGCCCC
IRR : TGAAGCGCCCCGGGTTTACCGGAGAGTTTTTTGTTCAAAACTTACGCGGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
atcacgggac | cctggagctt | 0 |
DNA sequence
TGAAGCGCCCCGGGTTTACCGGAGAGTAAAACACTCGAAGGATGAGCCCCATGAGCCAGAAGAGATATACCCCCGCCTATCCTGCCGAACTTCGCGATCG
CGGCGTTCGGCTTTTCCGCGACCATCGTGGCGAATATGCCAGTGACAATGCTGCTTACCGGGCGATTGCGCCGAAGCTGGGCTGCTCTCCGGACAGTCTT
CGCGTGTGGTGCCAGCAGGCCGAACGTGACGCGGGACAGCGGGCCGGACTGACAAGCGCAGAGAAGGATCGGATCAAGGAATTGGAGCGCGAGGTCCGTG
AACTTCGGACGGCCAACGAGATTCTGAAGAAGGCGAGCGCGTATTTCGCGCAGGCGGAGCTCGACCGCCCGTTCCGGAAATGATCGCGTTCATTGCAGAT
CATCGAGAGGTCTTCGGGGTCGAGCCGATCTGTCGCGTGCTGCCGATCGCCCCCTCGACATACTACGCGCGCAGGGCGATCCTCCGCGACCCCGATCGAG
CCTCGGATCGGGCGAAGCGGGATGCACGGAACAGCGCGGAGATCAAGCGTGCTTTCGATGCCAGCCGCGGCCGCTACGGGGCCCGCAAGATCTGGCATCA
ACTGCGCCGCGAGGGAAAGGACATCGCCCGCTGCACGGTCGAACGGCTCATGAAAGCTCTCGATTTGCAGGGCGTGGTGCGCGGCAAGAAGCGCACGACC
CTTCCTGACCCGGCCCAGGCCTGCCCGGACGACAAGGTGAACCGGGAATTTACAGCCGCGACCCCGAACCAGCTTTGGGTCAGCGACTTCACCTATGTCT
CCAGCTGGGCCGGCATGGTCTATGTCGCCTTCGTCATCGATGTCTTCGCCCGCAGGATTGTCGGCTGGCGGGTGTCGACCTCCATGACCACCAGCTTCGT
GCTCGATGCACTGAACCAGGCGATCTGTCAGCGTTGTTCTGATAAAAGCGATGCGCTGATCCACCATTCGGATCGCGGCAGCCAATACCTGTCGATCCGC
TACACCGAGCGGCTGGAGGAAGCCGGGATCGATCCTTCGGTGGGCAGCGTCGGTGACAGCTATGATAACGCCCTGGCCGAAAGCACCATCGGATTGTTCA
AGACCGAGGTCATCAACTTTCTCAGCCCGTGGAAATCCGTCGGCCAGGTCGAATGGGAAACCCTCAAATGGGTCAGCTGGTATAACTCAGAGCGGCTGCA
CAGCGCCATCGGCTATGTCACGCCGCAAGAAGCGGAGGAGAAGTTCTATGCGAATGTGAACACCCTTGAAAAAGCCGCGTAAGTTTTGAACAAAAAACTC
TCCGGTAAACCCGGGGCGCTTCA
CGGCGTTCGGCTTTTCCGCGACCATCGTGGCGAATATGCCAGTGACAATGCTGCTTACCGGGCGATTGCGCCGAAGCTGGGCTGCTCTCCGGACAGTCTT
CGCGTGTGGTGCCAGCAGGCCGAACGTGACGCGGGACAGCGGGCCGGACTGACAAGCGCAGAGAAGGATCGGATCAAGGAATTGGAGCGCGAGGTCCGTG
AACTTCGGACGGCCAACGAGATTCTGAAGAAGGCGAGCGCGTATTTCGCGCAGGCGGAGCTCGACCGCCCGTTCCGGAAATGATCGCGTTCATTGCAGAT
CATCGAGAGGTCTTCGGGGTCGAGCCGATCTGTCGCGTGCTGCCGATCGCCCCCTCGACATACTACGCGCGCAGGGCGATCCTCCGCGACCCCGATCGAG
CCTCGGATCGGGCGAAGCGGGATGCACGGAACAGCGCGGAGATCAAGCGTGCTTTCGATGCCAGCCGCGGCCGCTACGGGGCCCGCAAGATCTGGCATCA
ACTGCGCCGCGAGGGAAAGGACATCGCCCGCTGCACGGTCGAACGGCTCATGAAAGCTCTCGATTTGCAGGGCGTGGTGCGCGGCAAGAAGCGCACGACC
CTTCCTGACCCGGCCCAGGCCTGCCCGGACGACAAGGTGAACCGGGAATTTACAGCCGCGACCCCGAACCAGCTTTGGGTCAGCGACTTCACCTATGTCT
CCAGCTGGGCCGGCATGGTCTATGTCGCCTTCGTCATCGATGTCTTCGCCCGCAGGATTGTCGGCTGGCGGGTGTCGACCTCCATGACCACCAGCTTCGT
GCTCGATGCACTGAACCAGGCGATCTGTCAGCGTTGTTCTGATAAAAGCGATGCGCTGATCCACCATTCGGATCGCGGCAGCCAATACCTGTCGATCCGC
TACACCGAGCGGCTGGAGGAAGCCGGGATCGATCCTTCGGTGGGCAGCGTCGGTGACAGCTATGATAACGCCCTGGCCGAAAGCACCATCGGATTGTTCA
AGACCGAGGTCATCAACTTTCTCAGCCCGTGGAAATCCGTCGGCCAGGTCGAATGGGAAACCCTCAAATGGGTCAGCTGGTATAACTCAGAGCGGCTGCA
CAGCGCCATCGGCTATGTCACGCCGCAAGAAGCGGAGGAGAAGTTCTATGCGAATGTGAACACCCTTGAAAAAGCCGCGTAAGTTTTGAACAAAAAACTC
TCCGGTAAACCCGGGGCGCTTCA
Recoding section
- Recoding by frameshift
- Frame -1
- Type translational
- Experimentally demonstrated No
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
333 bp | 110 aa | 51 | 383 | + | No |
Description : First part of the transposase
ORF sequence :
MSQKRYTPAYPAELRDRGVRLFRDHRGEYASDNAAYRAIAPKLGCSPDSLRVWCQQAERDAGQRAGLTSAEKDRIKELEREVRELRTANEILKKASAYFA
QAELDRPFRK
QAELDRPFRK
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
981 bp | 326 aa | 302 | 1282 | + | No |
Description : Second part of the transposase
ORF sequence :
TSDGQRDSEEGERVFRAGGARPPVPEMIAFIADHREVFGVEPICRVLPIAPSTYYARRAILRDPDRASDRAKRDARNSAEIKRAFDASRGRYGARKIWHQ
LRREGKDIARCTVERLMKALDLQGVVRGKKRTTLPDPAQACPDDKVNREFTAATPNQLWVSDFTYVSSWAGMVYVAFVIDVFARRIVGWRVSTSMTTSFV
LDALNQAICQRCSDKSDALIHHSDRGSQYLSIRYTERLEEAGIDPSVGSVGDSYDNALAESTIGLFKTEVINFLSPWKSVGQVEWETLKWVSWYNSERLH
SAIGYVTPQEAEEKFYANVNTLEKAA
LRREGKDIARCTVERLMKALDLQGVVRGKKRTTLPDPAQACPDDKVNREFTAATPNQLWVSDFTYVSSWAGMVYVAFVIDVFARRIVGWRVSTSMTTSFV
LDALNQAICQRCSDKSDALIHHSDRGSQYLSIRYTERLEEAGIDPSVGSVGDSYDNALAESTIGLFKTEVINFLSPWKSVGQVEWETLKWVSWYNSERLH
SAIGYVTPQEAEEKFYANVNTLEKAA
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1232 bp | 410 aa | 51 | 1282 | + | Yes |
Chemistry : DDE
ORF sequence :
MSQKRYTPAYPAELRDRGVRLFRDHRGEYASDNAAYRAIAPKLGCSPDSLRVWCQQAERDAGQRAGLTSAEKDRIKELEREVRELRTANEILKKASAYFR
AGGARPPVPEMIAFIADHREVFGVEPICRVLPIAPSTYYARRAILRDPDRASDRAKRDARNSAEIKRAFDASRGRYGARKIWHQLRREGKDIARCTVERL
MKALDLQGVVRGKKRTTLPDPAQACPDDKVNREFTAATPNQLWVSDFTYVSSWAGMVYVAFVIDVFARRIVGWRVSTSMTTSFVLDALNQAICQRCSDKS
DALIHHSDRGSQYLSIRYTERLEEAGIDPSVGSVGDSYDNALAESTIGLFKTEVINFLSPWKSVGQVEWETLKWVSWYNSERLHSAIGYVTPQEAEEKFY
ANVNTLEKAA
AGGARPPVPEMIAFIADHREVFGVEPICRVLPIAPSTYYARRAILRDPDRASDRAKRDARNSAEIKRAFDASRGRYGARKIWHQLRREGKDIARCTVERL
MKALDLQGVVRGKKRTTLPDPAQACPDDKVNREFTAATPNQLWVSDFTYVSSWAGMVYVAFVIDVFARRIVGWRVSTSMTTSFVLDALNQAICQRCSDKS
DALIHHSDRGSQYLSIRYTERLEEAGIDPSVGSVGDSYDNALAESTIGLFKTEVINFLSPWKSVGQVEWETLKWVSWYNSERLHSAIGYVTPQEAEEKFY
ANVNTLEKAA
Blast result :
Comments
ISPye52 is 75% aa similar to ISMex33.
ISPye52 was identified by in silico sequence analysis of Paracoccus yeei CCUG 32053 (1 copy). The third ORF is the putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
ISPye52 was identified by in silico sequence analysis of Paracoccus yeei CCUG 32053 (1 copy). The third ORF is the putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
References
1] Chmielowska C., Szuplewska M., Bartosik D. (2018) Direct submission.