ISPye26

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP020447 ND Paracoccus yeei
Paracoccus yeei
Paracoccus yeei FDAARGOS_252
DNA section
IS Length : 1363 bp

Ends


IR Length : 11/12

IRL : ATGATGTGACCGCCCCCCGACGGCATCTGATGTGCCAGGGTGGGTTTGCA
IRR : TGTGTAACCGCCCCAAGCGCAAGAGGGATTTTCTGAACTGGTCTTGGCGC

Comments : IRs are not at the termini of the IS.

Insertion site


Left flankDirect repeatRight flankDR Length
aactcggcgtTGttgcacaact2

DNA sequence

ATGATGTGACCGCCCCCCGACGGCATCTGATGTGCCAGGGTGGGTTTGCAACGATCCACAAAGGGGAGCGGTCATGTCGGATATTACCACGGTCGGGCTC
GATCTTGCGAAGGATGTGTTCCAGGTGCATGGAGCCGACGGCGCAGGCCGCGCCGTTCTACGCAAGAAGTTGCGGCGCACCCAGGTGCTGGAATTTTTCA
GCCAGCTGCGCCCTTGCATCGTGGCGATGGAGGCCTGTGGCGGCGCGCATTTCTGGGGCCGTGAGATCGGCAAGCTGGGTCATGACGTGCGGCTGATCCC
GCCTGCCTATGTGAAGCCGTTTGTGAAGCGCCAAAAGAATGATGCCGCCGATGCGGAGGCCATCTGCGAGGCGGCTATGCGCCCGACGATGCGCTTTGTT
CCGGTCAAGAGCGAAGAGACCCAAGGCGCGGCAATGGTCTTTCGCGTGCGCGAGCTGCTGATCCGGCAGCGCACGCAAGCCATCAATGCATTACGCGGCC
ATCTGACCGAGTTCGGTCAGATCGTGCCGCAAGGGGCATCCAACGCCACACGCCTAATCGCGATCGTGGAAGATCCGGAAAGTGACCTGCCTGCCGATGC
CATTCCCACGCTGAAGGTTCTGGTCGCGGCGCTCATGCACCTGGAGGCGGAGATCGCCAAGCTCGATGCGGAGATCGCCCGTCGCGCCAAGGAGAATGAC
GTAGCCCAGCGATTGATGACGGTTCCGGGCATCGGCCCCCTGATCGCGACAGCCATTGCTGTTCTGGCTCCACCTCCCGAGACCTTCCGCAAGGCACGCG
ACTTTGCCGCCTGGCTGGGTCTGGTGCCAAGACAGCATTCGACCGGGGGCAAGCAGCGCCTCGGGGCCACGACAAAGATGGGCGAACGATCCCTCAGGCG
TCTGCTGATCCTTGGTGCCAACAGCGTCATCATCAAGCGTCAGGTCCATGCCGCGGCGCAACCGGGCACCTGGCTGGCAGGCATGCTGTCGCGCAAGCCA
CCGATGCTGGTGCGCGTCGCACTGGCCAACAAGATGGCACGCATTGTCTGGGCCCTGATGGCGAAGGGCCAGGACTATCGAGCTCCGGCTGCGACGGCGT
AAGCCGAGCATCAGTCGCGAGGACGTCGGAGCGGAAGAGGGCAAGGAGCAGTTTGGCGCAACAGTCGTGAGACGGGATCGGGAGAACCAGTGTGCAACAG
AGTGCCTATGAGCACGCGGCTTTGATCTGGACCCGACCTTCGAACACCATACGGGCCCTGCGGCATGGATCGCGCCGCATCATGAGGCCGGACACATGTC
AGCACCCGATGACGCGCCAAGACCAGTTCAGAAAATCCCTCTTGCGCTTGGGGCGGTTACACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1029 bp342 aa741102+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MSDITTVGLDLAKDVFQVHGADGAGRAVLRKKLRRTQVLEFFSQLRPCIVAMEACGGAHFWGREIGKLGHDVRLIPPAYVKPFVKRQKNDAADAEAICEA
AMRPTMRFVPVKSEETQGAAMVFRVRELLIRQRTQAINALRGHLTEFGQIVPQGASNATRLIAIVEDPESDLPADAIPTLKVLVAALMHLEAEIAKLDAE
IARRAKENDVAQRLMTVPGIGPLIATAIAVLAPPPETFRKARDFAAWLGLVPRQHSTGGKQRLGATTKMGERSLRRLLILGANSVIIKRQVHAAAQPGTW
LAGMLSRKPPMLVRVALANKMARIVWALMAKGQDYRAPAATA

 

Blast result :
Comments
ISPye26 is 94% aa similar to ISPye46.
ISPye26 was identified by in silico sequence analysis of Paracoccus yeei strain FDAARGOS_252 (1 copy of this IS present in the genome).
References
1] Chmielowska C., Szuplewska M., Bartosik D. (2018) Direct submission.
2] Goldberg,B., Campos,J., Tallon,L., Sadzewicz,L., Sengamalay,N., Ott,S., Godinez,A., Nagaraj,S., Vavikolanu,K., Aluvathingal,J., Nadendla,S. and Sichtig,H. (2017) Direct GenBank submission.