ISPye26
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP020447 | ND | Paracoccus yeei | Paracoccus yeei Paracoccus yeei FDAARGOS_252 |
DNA section
IS Length : 1363 bp
Ends
IR Length : 11/12
IRL : ATGATGTGACCGCCCCCCGACGGCATCTGATGTGCCAGGGTGGGTTTGCA
IRR : TGTGTAACCGCCCCAAGCGCAAGAGGGATTTTCTGAACTGGTCTTGGCGC
Comments : IRs are not at the termini of the IS.
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
aactcggcgt | TG | ttgcacaact | 2 |
DNA sequence
ATGATGTGACCGCCCCCCGACGGCATCTGATGTGCCAGGGTGGGTTTGCAACGATCCACAAAGGGGAGCGGTCATGTCGGATATTACCACGGTCGGGCTC
GATCTTGCGAAGGATGTGTTCCAGGTGCATGGAGCCGACGGCGCAGGCCGCGCCGTTCTACGCAAGAAGTTGCGGCGCACCCAGGTGCTGGAATTTTTCA
GCCAGCTGCGCCCTTGCATCGTGGCGATGGAGGCCTGTGGCGGCGCGCATTTCTGGGGCCGTGAGATCGGCAAGCTGGGTCATGACGTGCGGCTGATCCC
GCCTGCCTATGTGAAGCCGTTTGTGAAGCGCCAAAAGAATGATGCCGCCGATGCGGAGGCCATCTGCGAGGCGGCTATGCGCCCGACGATGCGCTTTGTT
CCGGTCAAGAGCGAAGAGACCCAAGGCGCGGCAATGGTCTTTCGCGTGCGCGAGCTGCTGATCCGGCAGCGCACGCAAGCCATCAATGCATTACGCGGCC
ATCTGACCGAGTTCGGTCAGATCGTGCCGCAAGGGGCATCCAACGCCACACGCCTAATCGCGATCGTGGAAGATCCGGAAAGTGACCTGCCTGCCGATGC
CATTCCCACGCTGAAGGTTCTGGTCGCGGCGCTCATGCACCTGGAGGCGGAGATCGCCAAGCTCGATGCGGAGATCGCCCGTCGCGCCAAGGAGAATGAC
GTAGCCCAGCGATTGATGACGGTTCCGGGCATCGGCCCCCTGATCGCGACAGCCATTGCTGTTCTGGCTCCACCTCCCGAGACCTTCCGCAAGGCACGCG
ACTTTGCCGCCTGGCTGGGTCTGGTGCCAAGACAGCATTCGACCGGGGGCAAGCAGCGCCTCGGGGCCACGACAAAGATGGGCGAACGATCCCTCAGGCG
TCTGCTGATCCTTGGTGCCAACAGCGTCATCATCAAGCGTCAGGTCCATGCCGCGGCGCAACCGGGCACCTGGCTGGCAGGCATGCTGTCGCGCAAGCCA
CCGATGCTGGTGCGCGTCGCACTGGCCAACAAGATGGCACGCATTGTCTGGGCCCTGATGGCGAAGGGCCAGGACTATCGAGCTCCGGCTGCGACGGCGT
AAGCCGAGCATCAGTCGCGAGGACGTCGGAGCGGAAGAGGGCAAGGAGCAGTTTGGCGCAACAGTCGTGAGACGGGATCGGGAGAACCAGTGTGCAACAG
AGTGCCTATGAGCACGCGGCTTTGATCTGGACCCGACCTTCGAACACCATACGGGCCCTGCGGCATGGATCGCGCCGCATCATGAGGCCGGACACATGTC
AGCACCCGATGACGCGCCAAGACCAGTTCAGAAAATCCCTCTTGCGCTTGGGGCGGTTACACA
GATCTTGCGAAGGATGTGTTCCAGGTGCATGGAGCCGACGGCGCAGGCCGCGCCGTTCTACGCAAGAAGTTGCGGCGCACCCAGGTGCTGGAATTTTTCA
GCCAGCTGCGCCCTTGCATCGTGGCGATGGAGGCCTGTGGCGGCGCGCATTTCTGGGGCCGTGAGATCGGCAAGCTGGGTCATGACGTGCGGCTGATCCC
GCCTGCCTATGTGAAGCCGTTTGTGAAGCGCCAAAAGAATGATGCCGCCGATGCGGAGGCCATCTGCGAGGCGGCTATGCGCCCGACGATGCGCTTTGTT
CCGGTCAAGAGCGAAGAGACCCAAGGCGCGGCAATGGTCTTTCGCGTGCGCGAGCTGCTGATCCGGCAGCGCACGCAAGCCATCAATGCATTACGCGGCC
ATCTGACCGAGTTCGGTCAGATCGTGCCGCAAGGGGCATCCAACGCCACACGCCTAATCGCGATCGTGGAAGATCCGGAAAGTGACCTGCCTGCCGATGC
CATTCCCACGCTGAAGGTTCTGGTCGCGGCGCTCATGCACCTGGAGGCGGAGATCGCCAAGCTCGATGCGGAGATCGCCCGTCGCGCCAAGGAGAATGAC
GTAGCCCAGCGATTGATGACGGTTCCGGGCATCGGCCCCCTGATCGCGACAGCCATTGCTGTTCTGGCTCCACCTCCCGAGACCTTCCGCAAGGCACGCG
ACTTTGCCGCCTGGCTGGGTCTGGTGCCAAGACAGCATTCGACCGGGGGCAAGCAGCGCCTCGGGGCCACGACAAAGATGGGCGAACGATCCCTCAGGCG
TCTGCTGATCCTTGGTGCCAACAGCGTCATCATCAAGCGTCAGGTCCATGCCGCGGCGCAACCGGGCACCTGGCTGGCAGGCATGCTGTCGCGCAAGCCA
CCGATGCTGGTGCGCGTCGCACTGGCCAACAAGATGGCACGCATTGTCTGGGCCCTGATGGCGAAGGGCCAGGACTATCGAGCTCCGGCTGCGACGGCGT
AAGCCGAGCATCAGTCGCGAGGACGTCGGAGCGGAAGAGGGCAAGGAGCAGTTTGGCGCAACAGTCGTGAGACGGGATCGGGAGAACCAGTGTGCAACAG
AGTGCCTATGAGCACGCGGCTTTGATCTGGACCCGACCTTCGAACACCATACGGGCCCTGCGGCATGGATCGCGCCGCATCATGAGGCCGGACACATGTC
AGCACCCGATGACGCGCCAAGACCAGTTCAGAAAATCCCTCTTGCGCTTGGGGCGGTTACACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1029 bp | 342 aa | 74 | 1102 | + | No |
Chemistry : DEDD
ORF sequence :
MSDITTVGLDLAKDVFQVHGADGAGRAVLRKKLRRTQVLEFFSQLRPCIVAMEACGGAHFWGREIGKLGHDVRLIPPAYVKPFVKRQKNDAADAEAICEA
AMRPTMRFVPVKSEETQGAAMVFRVRELLIRQRTQAINALRGHLTEFGQIVPQGASNATRLIAIVEDPESDLPADAIPTLKVLVAALMHLEAEIAKLDAE
IARRAKENDVAQRLMTVPGIGPLIATAIAVLAPPPETFRKARDFAAWLGLVPRQHSTGGKQRLGATTKMGERSLRRLLILGANSVIIKRQVHAAAQPGTW
LAGMLSRKPPMLVRVALANKMARIVWALMAKGQDYRAPAATA
AMRPTMRFVPVKSEETQGAAMVFRVRELLIRQRTQAINALRGHLTEFGQIVPQGASNATRLIAIVEDPESDLPADAIPTLKVLVAALMHLEAEIAKLDAE
IARRAKENDVAQRLMTVPGIGPLIATAIAVLAPPPETFRKARDFAAWLGLVPRQHSTGGKQRLGATTKMGERSLRRLLILGANSVIIKRQVHAAAQPGTW
LAGMLSRKPPMLVRVALANKMARIVWALMAKGQDYRAPAATA
Blast result :
Comments
ISPye26 is 94% aa similar to ISPye46.
ISPye26 was identified by in silico sequence analysis of Paracoccus yeei strain FDAARGOS_252 (1 copy of this IS present in the genome).
ISPye26 was identified by in silico sequence analysis of Paracoccus yeei strain FDAARGOS_252 (1 copy of this IS present in the genome).
References
1] Chmielowska C., Szuplewska M., Bartosik D. (2018) Direct submission.
2] Goldberg,B., Campos,J., Tallon,L., Sadzewicz,L., Sengamalay,N., Ott,S., Godinez,A., Nagaraj,S., Vavikolanu,K., Aluvathingal,J., Nadendla,S. and Sichtig,H. (2017) Direct GenBank submission.
2] Goldberg,B., Campos,J., Tallon,L., Sadzewicz,L., Sengamalay,N., Ott,S., Godinez,A., Nagaraj,S., Vavikolanu,K., Aluvathingal,J., Nadendla,S. and Sichtig,H. (2017) Direct GenBank submission.