ISHahy12

  • Family IS21
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP002304 ND Halanaerobium hydrogeniformans
Halanaerobium hydrogeniformans
DNA section
IS Length : 2517 bp

Ends


IR Length : 35/50

IRL : TGTATATGATAATCTAAAAGTGACCCAGGATAATAATTTAAAATTGACCC
IRR : TGTTTTTGTCAAGTGAAATTTGACCCTTTTATTAATTGAAAATTGACCCG

Insertion site


Left flankDirect repeatRight flankDR Length
GCTCCACCTGTAGACACAATACAATAACTTCTTGACC6

DNA sequence

TGTATATGATAATCTAAAAGTGACCCAGGATAATAATTTAAAATTGACCCGTTTAAATAGATAATATAAACTGTCCATAATAAAATAAAAATTATGGGCA
GGTGAAAAAGGTGATAAAATTGAATGAAAAAGCCGATATTCTAATTAAACATTTTGTCGAGGGTCAATCAATTAGAAAAATAGCTAGAGAGTCAGAATTT
TCAAGAAATACTATCCGCAAATATATCCGAGATCATGAAGAAAAACTTCAGAATCTGGATAAAGCAAAATCCAGAGATGAAATATTAACCTTAATTGAAT
CTCTAGTAGAAACTCCTGAGTATGACAGCTCTAACCGTAATAAATATAAAATGAATGAAGCTATCAAAAAAGATATTGATTACTGCATTAAAGAAAACAA
AAAACGGCGAGCAACAGGTATGCGTAAGCTGCAGCGTAAAAAGATTGATATTCATGAATATCTGCTCGGTAAAGGTCATGATATTAGTTACTCAACAGTC
TGCAACTACATCAGAAACACCTATGAAAATGCAGCCAAAGAAGCATATATAAAACAGCTCTATCATGAAGGAGAATCCCTTCAGTTCGACTATGGTGAAG
CCAATTTAGAAATTGCAGGTAAAAACAAAACCCTTAATATGGCTCTATTCACAACTGGTTTTGGTTTTCATCACTATGGTAAATTTTATGCTAATAAAAA
GATGACTTCATTTTTAGATGCTCATGTTAAAGCATTTAAGAACTTCAATGGAGTATATCATGAAGTAGTTTATGATAATTTAAAACAGGCTGTAAAAAGA
TTCGTTGGTCCTTCTGAAAAAGAAGCTACTGAGGATCTAGTTAAGCTTTCCCTCTACTATGGCTTTAAATACCGCTTTTGTAACGCATATCGCGGGAACG
AAAAAGGCAAAGTTGAGAAAGGCGTTGATTTCGTCAGGCGGCGGATCTTCTCCCAGAAAACAAGTTTTGAATCCATAGAAGAAGCAAATGAGTATCTTGC
TGCAGGACTAAAAAGGCTTAACTCAATGAAAAAAGCTGAATTAGATAACAGATCACCATATGAGCTCTGGCAGCAGGAAATACCATATCTACTGCCTTTA
AAACCTCCATATGAGGCCTGCAGAGAAAAAGAATGTAGAGTCAATAAATACAGCTTTGTAACCTTTGAGCAGAATAAATATTCTGTACCTGATCATCTTG
TTGGAAGATTTGTTAACAGCAGAATTTACTCAGATTATATAAAAATATACTACAACGATGAGCTGGTAGCAAAGCATCAGAGAATATATGAAGTTCATAA
ATGCAGTATTGAAATAGAACATTATCTTCTAACTCTAAAAAGAAAGCCTGGTGCATTGAAAAAATCCCTAGCTTTTCATCAAATGGCACCAGACCTCAAA
GAGATATATAAATTATACTACGATAATTATACCAGAAAAACTAAAGAATTCATAGAGCTTTTAGAACTGGTAAGTGAGAAAGGTCTGGATGAAATTAAGG
GTGCTATAGAAACTCTTTCTAAAAACAAAAAGTCAATGGTAACAACTGCTAATATCAAAGTGTTAGTTCAAAAGGAGAATACTCCTGATTTTACAATTTC
CAGTGAAATAAATGAGAATTCTCTGGAACTATTAAAAAAATGGGATACTATGTTTAGTCTCCAAAATCATCAGGAGGTGATCCAGTAATGAATAAAGAAA
TAATACTGGAAACTAAAAATTACATCAAAGAACTAAAGATTGCTGGTATTAGAAACGACTTAAATCAAAAACTGGCTGAAGCTTATCGCAACAATACACC
TTACGAAGAACTATTAAGAGATCTATTTCGAGATGCATATGATATGCGTAAAGAAAATGGCCGTAAAAATAGGATTAAAAATGCTAAATTCCCATACAAA
AAATATTTGGATACCCTAATTGTAGACTATCTACCTGAGAGTGCTCAAGCTAAGTTTAAAGAGTTAAAGTCGCTTAAATTTATTGAAGAAAATAGAAACA
TAATTTTCTCAGGAAATCCTGGGACTGGAAAAAGTCATTTGTCTATAGGCCTTGGTATCAAGGCCTGTAACGAGGGCTATAAAGTCTTCTTTGCCACAGT
ACCACAGTTTATCAACCAATTGAAAGAAACCCAGAGCGAAAGAAGATTAACTAATTTTGAATCTAAATTCCAAAAATATGACTTAATAATTTTAGATGAA
TTGGGCTACATCTCTTTTGACCAGAAAGGAAGCGAACTTTTATTCTCCTTTCTTTCACTAAGAGCAGAACGCAAATCTACTATCATAACTTCCAATCTCT
CATTTGAGAGGTGGAATGAGGTGTTTAATGATCCAGCATTAACTGCAGCTATGGTAGATAGATTGACCCACAAATCATATGTAATTAATATGAATGGTAA
TTCTTACCGAATGAAAGAAACTGAAGAGTGGCTGGGTCAATAAAATTAATATTATTTTTTGCTTACCCGGGTCAATTTTCAATTAATAAAAGGGTCAAAT
TTCACTTGACAAAAACA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1578 bp525 aa1111688+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MIKLNEKADILIKHFVEGQSIRKIARESEFSRNTIRKYIRDHEEKLQNLDKAKSRDEILTLIESLVETPEYDSSNRNKYKMNEAIKKDIDYCIKENKKRR
ATGMRKLQRKKIDIHEYLLGKGHDISYSTVCNYIRNTYENAAKEAYIKQLYHEGESLQFDYGEANLEIAGKNKTLNMALFTTGFGFHHYGKFYANKKMTS
FLDAHVKAFKNFNGVYHEVVYDNLKQAVKRFVGPSEKEATEDLVKLSLYYGFKYRFCNAYRGNEKGKVEKGVDFVRRRIFSQKTSFESIEEANEYLAAGL
KRLNSMKKAELDNRSPYELWQQEIPYLLPLKPPYEACREKECRVNKYSFVTFEQNKYSVPDHLVGRFVNSRIYSDYIKIYYNDELVAKHQRIYEVHKCSI
EIEHYLLTLKRKPGALKKSLAFHQMAPDLKEIYKLYYDNYTRKTKEFIELLELVSEKGLDEIKGAIETLSKNKKSMVTTANIKVLVQKENTPDFTISSEI
NENSLELLKKWDTMFSLQNHQEVIQ

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
756 bp251 aa16882443+No
ORF function : Accessory Gene
AG : IS21 helper

ORF sequence :

MNKEIILETKNYIKELKIAGIRNDLNQKLAEAYRNNTPYEELLRDLFRDAYDMRKENGRKNRIKNAKFPYKKYLDTLIVDYLPESAQAKFKELKSLKFIE
ENRNIIFSGNPGTGKSHLSIGLGIKACNEGYKVFFATVPQFINQLKETQSERRLTNFESKFQKYDLIILDELGYISFDQKGSELLFSFLSLRAERKSTII
TSNLSFERWNEVFNDPALTAAMVDRLTHKSYVINMNGNSYRMKETEEWLGQ

 

Blast result :
Comments
ISHahy12 is 56% aa similar to ISSau9.
References
1] Bassett K. (2018) Direct Submission.
2] Brown S.D., Begemann M.B., Mormile M.R., Wall J.D., Han C.S., Goodwin L.A., Pitluck S., Land M.L., Hauser L.J. and Elias D.A. (2011) J. Bacteriol. 193, 3682-3683