ISCp1
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AB444205 | ND | Clostridium perfringens | Clostridium perfringens NCTC 8533B4D plasmid pCP8533etx Clostridium perfringens NCTC2062 Clostridium perfringens NCTC8533 |
DNA section
IS Length : 1412 bp
Ends
IR Length : 22/28
IRL : GAGAGTGTAAAATAGTCTGTGTAAACTAATAAGATGATATAATTAAATAT
IRR : GAGAATGTCAATAATTTTGTGTAAACTATCTAAAAAAATATATTAAAATT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCTTAAGTCT | AATTT | TTATTTTGAA | 5 |
DNA sequence
GAGAGTGTAAAATAGTCTGTGTAAACTAATAAGATGATATAATTAAATATCATATAAAAGGAGGGTGCACAGACTATATCTTATGCCGAAAAAGAATTGA
TAAAACAACTAATATAGAGACTGCTGAATATGCTCAAAATGTTATTAAAAGTTTATTTGGTGGTTTAATTCAACAAATACTTGAAGCTGAAATGGAAGAA
TATTTAGGATATTTAAAATATGATTATTCAAATAAAAATACTACTGATTCTCGTAATTGGGAAAATGAGAAAACTGTTAAATTTGATTTAGATATCCCAA
GAGATCGTGAGGGTTCTTTCGAACCACAAATCGAAAAGAAACATCAAACTACTAGAAAGTTCAATAATAGGGGGGAGGTATGCGAAAGGCATGTCTACAC
GAGATATAGCTACTCAAGTTAATGAAATGTACGGCATGGATGTTTCACCTACTTTAATCTCAAATATAACTGATAAAATAATACCTTCTATAAAAGAATG
GCAATGTAAACCATTAGAAAGTATATATCCTATCGTTTTTATGGATGCTATTCATTTTAAAGTTAAAAAAGATAATTTTATAGTTAATAAGGCTGCTTAC
GCTGCTATCGGTGTAAATATTGAAGGGAAGAAAGATGTTTTAGGTATTTGGATTGGTGCTGCTGAATCTTCAAAGTACTGGTTACTTGTTTTAAATGAAT
TAAAAAACAGTGGAGTTAAAGATATTCTTATAGCTTGTATAGATGGATTAAATGGCTTTAAAGAAGCTATAAAAGCCGTATATCCGAATACTGAGGTACA
ACGTTGTATTATTCACCAAATTAGAAATTCTAGTCGTTATTTATCATATAAAGATATTAAAGAGTTTAATGCTGATTTAAAACTAGTATATACGGCTGTA
AACGAAGATGCTGCACTTCAAGCTCTAAGTTCTCTTGAGGAGAAATGGGGAGATAAATATTTACTTGCTATAAAATCTTGGAGAAACAATTGGGAGGAGC
TATCTACATTCTTTAAATATCCACCGGAGATACGAAGAATAATATATACAACTAATGCTATGGAAGGCTATAATAGACAATTAAGAAAAGTTACTAAAAC
TAAAACAGCTTTTCCTACTGATGAAGCTTTACTTAAAATACTTTATCTTGTAACAATAGATATAACAAAAAAATGGGTTCAATCTATTAGGGGATGGCCT
CAAATCTTAGCACAACTTTCAATTTATTTCGACGAACGTCTTGACAACCATTTATATTAAAAAATTTAATATAATAGCTTTAGTTTTTGTACAATTTATA
TTAAATATAATTACATAAAAAGAAAATTAAGGTTTAAATAAAATGCTATCTAAACCTCAATAAATTTTAATATATTTTTTTAGATAGTTTACACAAAATT
ATTGACATTCTC
TAAAACAACTAATATAGAGACTGCTGAATATGCTCAAAATGTTATTAAAAGTTTATTTGGTGGTTTAATTCAACAAATACTTGAAGCTGAAATGGAAGAA
TATTTAGGATATTTAAAATATGATTATTCAAATAAAAATACTACTGATTCTCGTAATTGGGAAAATGAGAAAACTGTTAAATTTGATTTAGATATCCCAA
GAGATCGTGAGGGTTCTTTCGAACCACAAATCGAAAAGAAACATCAAACTACTAGAAAGTTCAATAATAGGGGGGAGGTATGCGAAAGGCATGTCTACAC
GAGATATAGCTACTCAAGTTAATGAAATGTACGGCATGGATGTTTCACCTACTTTAATCTCAAATATAACTGATAAAATAATACCTTCTATAAAAGAATG
GCAATGTAAACCATTAGAAAGTATATATCCTATCGTTTTTATGGATGCTATTCATTTTAAAGTTAAAAAAGATAATTTTATAGTTAATAAGGCTGCTTAC
GCTGCTATCGGTGTAAATATTGAAGGGAAGAAAGATGTTTTAGGTATTTGGATTGGTGCTGCTGAATCTTCAAAGTACTGGTTACTTGTTTTAAATGAAT
TAAAAAACAGTGGAGTTAAAGATATTCTTATAGCTTGTATAGATGGATTAAATGGCTTTAAAGAAGCTATAAAAGCCGTATATCCGAATACTGAGGTACA
ACGTTGTATTATTCACCAAATTAGAAATTCTAGTCGTTATTTATCATATAAAGATATTAAAGAGTTTAATGCTGATTTAAAACTAGTATATACGGCTGTA
AACGAAGATGCTGCACTTCAAGCTCTAAGTTCTCTTGAGGAGAAATGGGGAGATAAATATTTACTTGCTATAAAATCTTGGAGAAACAATTGGGAGGAGC
TATCTACATTCTTTAAATATCCACCGGAGATACGAAGAATAATATATACAACTAATGCTATGGAAGGCTATAATAGACAATTAAGAAAAGTTACTAAAAC
TAAAACAGCTTTTCCTACTGATGAAGCTTTACTTAAAATACTTTATCTTGTAACAATAGATATAACAAAAAAATGGGTTCAATCTATTAGGGGATGGCCT
CAAATCTTAGCACAACTTTCAATTTATTTCGACGAACGTCTTGACAACCATTTATATTAAAAAATTTAATATAATAGCTTTAGTTTTTGTACAATTTATA
TTAAATATAATTACATAAAAAGAAAATTAAGGTTTAAATAAAATGCTATCTAAACCTCAATAAATTTTAATATATTTTTTTAGATAGTTTACACAAAATT
ATTGACATTCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
991 bp | 329 aa | 141 | 1131 | + | No |
Chemistry : DDE
ORF sequence :
MIKSLFGGLIQQILEAEMEEYLGYLKYDYSNKNTTDSRNWENEKTVKFDLDIPRDREGSFEPQIEKKHQTTRKFIIGGRYAKGMSTRDIATQVNEMYGMD
VSPTLISNITDKIIPSIKEWQCKPLESIYPIVFMDAIHFKVKKDNSIVNKAAYAAIGVNIEGKKDVLGIWIGAAESSKYWLLVLNELKNSGVKDILIACI
DGLNGFKEAIKAVYPNTEVQRCIIHQIRNSSRYLSYKDIKEFNADLKLVYTAVNEDAALQALSSLEEKWGDKYLLAIKSWRNNWEELSTFFKYPPEIRRI
IYTTNAMEGYNRQLRKVTKTKTAFPTDEA
VSPTLISNITDKIIPSIKEWQCKPLESIYPIVFMDAIHFKVKKDNSIVNKAAYAAIGVNIEGKKDVLGIWIGAAESSKYWLLVLNELKNSGVKDILIACI
DGLNGFKEAIKAVYPNTEVQRCIIHQIRNSSRYLSYKDIKEFNADLKLVYTAVNEDAALQALSSLEEKWGDKYLLAIKSWRNNWEELSTFFKYPPEIRRI
IYTTNAMEGYNRQLRKVTKTKTAFPTDEA
Blast result :
Comments
The first founded sequence : accession number : X60694 was a partial sequence.
ISCp1 (Daube, 1993) is located 128 bp downstream the epsilon toxin (etxD) in type B and D strains. ISCp1 partial ORF (obtained by 1 deletion and 1 addition to the current sequence) is 24.4 % identical to those of IS256 and IS406. Note the this sequence (somewhat shorter) has also been described by Hunter et al. (1992), and has the Accession Number M80837.
June 21 2012 : the sequence was replaced by the most closely related sequence. The transposase exhibits unexpected frameshift and is probably inactive.
ISCp1 (Daube, 1993) is located 128 bp downstream the epsilon toxin (etxD) in type B and D strains. ISCp1 partial ORF (obtained by 1 deletion and 1 addition to the current sequence) is 24.4 % identical to those of IS256 and IS406. Note the this sequence (somewhat shorter) has also been described by Hunter et al. (1992), and has the Accession Number M80837.
June 21 2012 : the sequence was replaced by the most closely related sequence. The transposase exhibits unexpected frameshift and is probably inactive.
References