ISPye51
- Family IS5
- Group IS427
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Paracoccus yeei | Paracoccus yeei Paracoccus yeei CCUG 32053 |
DNA section
IS Length : 841 bp
Ends
IR Length : 9/15
IRL : GGCTCCAGACCCATTGATTTCAATCTGTTAGCGTGATTTAGGCTCTGCAA
IRR : GCGTCAGGACTCGTTCTGGATCATAGCCAGAACAAGACGGTTGCCGCGAG
Comments : Ends based on alignment with other IS from this family.
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ggcccgctcc | TA | tgtacgggag | 2 |
DNA sequence
GGCTCCAGACCCATTGATTTCAATCTGTTAGCGTGATTTAGGCTCTGCAAGGAGACCTGATCCATGAGCAATCTTTACTGGCTGACCGACGCCCAGATGG
AGCGCCTCAAGCCGTTCTTTCCTAAGAGCCATGGCAAGCCCCGCGTCGATGACCGTCGCGTTCTGAGCGGTATAATCTTCATCAATCGCAATGGGTTGCG
CTGGTGTGACGCGCCGAAGGAATACGGCCCGGCCAAGACCCTCTACAACCGTTGGAAGCGCTGGAGCGACAATGGCGTCTTCGCCCGGATCATGGTGGGC
CTTGCCGCGGAGAGCGCCGAGCACAAGACGATCATGATCGATGCAACCTACCTCAAGGCATACCGGACGGCATCAAGCCTGTGCGTGAAAAAGGGGGGCG
TGGGCGCCAGATCGGGCGAACCAAAGGCGGCATGAACACCAAGCTGCACGCCGTTGCCGATGCGAAGGGGCGGCCGATCGGGTTTTTCATGTCGGCCGGT
CAGGTCAGCGATTACACCGGCGCAGCGGCGCTGCTGGGCAGCCTTCCGAAGGCGGGCTGGCTTCTGGCCGATCGGGGCTATGACGCCGACTGGTTCAGAG
AAGCATTGAAAGACATCGGGATAAAGGTTTGCATCCCGGGCAGGAAGTCCCGCAAGAAGGCCGTCAAATACGACAAGCGGCGTTACAAACAACGCAACCG
CATCGAGATCATGTTCGGGCGGCTGAAGGACTGGAGGCGTGTCGCGACGCGTTACGACAGATGCCCACAGACGTTCTTCTCTGCCATCTTGCTCGCGGCA
ACCGTCTTGTTCTGGCTATGATCCAGAACGAGTCCTGACGC
AGCGCCTCAAGCCGTTCTTTCCTAAGAGCCATGGCAAGCCCCGCGTCGATGACCGTCGCGTTCTGAGCGGTATAATCTTCATCAATCGCAATGGGTTGCG
CTGGTGTGACGCGCCGAAGGAATACGGCCCGGCCAAGACCCTCTACAACCGTTGGAAGCGCTGGAGCGACAATGGCGTCTTCGCCCGGATCATGGTGGGC
CTTGCCGCGGAGAGCGCCGAGCACAAGACGATCATGATCGATGCAACCTACCTCAAGGCATACCGGACGGCATCAAGCCTGTGCGTGAAAAAGGGGGGCG
TGGGCGCCAGATCGGGCGAACCAAAGGCGGCATGAACACCAAGCTGCACGCCGTTGCCGATGCGAAGGGGCGGCCGATCGGGTTTTTCATGTCGGCCGGT
CAGGTCAGCGATTACACCGGCGCAGCGGCGCTGCTGGGCAGCCTTCCGAAGGCGGGCTGGCTTCTGGCCGATCGGGGCTATGACGCCGACTGGTTCAGAG
AAGCATTGAAAGACATCGGGATAAAGGTTTGCATCCCGGGCAGGAAGTCCCGCAAGAAGGCCGTCAAATACGACAAGCGGCGTTACAAACAACGCAACCG
CATCGAGATCATGTTCGGGCGGCTGAAGGACTGGAGGCGTGTCGCGACGCGTTACGACAGATGCCCACAGACGTTCTTCTCTGCCATCTTGCTCGCGGCA
ACCGTCTTGTTCTGGCTATGATCCAGAACGAGTCCTGACGC
Recoding section
- Recoding by frameshift
- Frame -1
- Type translational
- Experimentally demonstrated No
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
372 bp | 123 aa | 64 | 435 | + | No |
Description : First part of the transposase
ORF sequence :
MSNLYWLTDAQMERLKPFFPKSHGKPRVDDRRVLSGIIFINRNGLRWCDAPKEYGPAKTLYNRWKRWSDNGVFARIMVGLAAESAEHKTIMIDATYLKAY
RTASSLCVKKGGVGARSGEPKAA
RTASSLCVKKGGVGARSGEPKAA
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
612 bp | 203 aa | 210 | 821 | + | No |
Description : Second part of the transposase
ORF sequence :
RAEGIRPGQDPLQPLEALERQWRLRPDHGGPCRGERRAQDDHDRCNLPQGIPDGIKPVREKGGRGRQIGRTKGGMNTKLHAVADAKGRPIGFFMSAGQVS
DYTGAAALLGSLPKAGWLLADRGYDADWFREALKDIGIKVCIPGRKSRKKAVKYDKRRYKQRNRIEIMFGRLKDWRRVATRYDRCPQTFFSAILLAATVL
FWL
DYTGAAALLGSLPKAGWLLADRGYDADWFREALKDIGIKVCIPGRKSRKKAVKYDKRRYKQRNRIEIMFGRLKDWRRVATRYDRCPQTFFSAILLAATVL
FWL
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
758 bp | 252 aa | 64 | 821 | + | Yes |
Chemistry : DDE
ORF sequence :
MSNLYWLTDAQMERLKPFFPKSHGKPRVDDRRVLSGIIFINRNGLRWCDAPKEYGPAKTLYNRWKRWSDNGVFARIMVGLAAESAEHKTIMIDATYLKAY
RTASSLCVKKGGRGRQIGRTKGGMNTKLHAVADAKGRPIGFFMSAGQVSDYTGAAALLGSLPKAGWLLADRGYDADWFREALKDIGIKVCIPGRKSRKKA
VKYDKRRYKQRNRIEIMFGRLKDWRRVATRYDRCPQTFFSAILLAATVLFWL
RTASSLCVKKGGRGRQIGRTKGGMNTKLHAVADAKGRPIGFFMSAGQVSDYTGAAALLGSLPKAGWLLADRGYDADWFREALKDIGIKVCIPGRKSRKKA
VKYDKRRYKQRNRIEIMFGRLKDWRRVATRYDRCPQTFFSAILLAATVLFWL
Blast result :
Comments
ISPye51 is 98% aa similar to ISPaes2.
ISPye51 was identified by in silico sequence analysis of Paracoccus yeei CCUG 32053 (1 copy).The third ORF is a putative ORFAB transposase reconstructed in silico by a possible -1 frameshift.
ISPye51 was identified by in silico sequence analysis of Paracoccus yeei CCUG 32053 (1 copy).The third ORF is a putative ORFAB transposase reconstructed in silico by a possible -1 frameshift.
References
1] Chmielowska C., Szuplewska M., Bartosik D. (2018) Direct submission.