ISPye43
- Family IS256
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CP024425 | ND | Paracoccus yeei | Paracoccus yeei Paracoccus yeei CCUG 32053 Paracoccus yeei TT13 |
DNA section
IS Length : 1333 bp
Ends
IR Length : 20/27
IRL : GAGAGTGTCCGATCTTCTGTGTATCGGTGAAGTGGTCCATGCTTCCTGAG
IRR : GGGAGTGTCAGGAACTCTGTGTATCTGGGCGGGCCCATGCGGTTTTCAGA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| gcatagatca | CGGCCATG | gccgtttcaa | 8 |
| cgggatcagc | tcccgcaagc | 0 | |
| tttcgaggcc | GCTCAGAC | agtcttgcgg | 8 |
| tcctgtgcgg | CTTGCCGC | ggataacgcc | 8 |
| gcttgaaggg | TGTGACAGGC | tcgcagcatc | 10 |
| gaaactaccg | CCCCGGTGC | tggatccggg | 9 |
| cggtgatcgg | GTGGTTGC | ccgtactgcc | 8 |
| tcttgcgcaa | CGGATGCCG | cgcggggatg | 9 |
| tgatatattc | CAGTCAAC | tccttgagac | 8 |
DNA sequence
GAGAGTGTCCGATCTTCTGTGTATCGGTGAAGTGGTCCATGCTTCCTGAGAGGAGCAAGGACGATGACGATTTCCAACGAGTTGCTGGACGAGTTGCTGA
AGGGCTGCAAGCGGCCTGAGGATCTGCTGGGCGATGCCGGGCTGATGAAAGAGCTGAAGGTCCGGCTGATGGAACGGATGCTGGGGGCCGAACTGACCGC
CCATCTGGGCTATGAGGCCGGTGCGGTGCCGCCAGCCGAACAGAGCAACCGCCGGAACGGGGTTGCGGCGAAGCGCGTGAAGGGTTCGGACGGCGAGGTG
CCGCTTTTGGTTCCGCGTGACCGGGACGGCAGTTTCGAGCCGGAGCTGGTGAAGAAAGGCCAGACCCGGATCGACGGGGTTGATGACAAGATCATCGGGC
TCTATGCCGCCGGGCTGTCGGTGCGCGACATCCAGGCCCATCTGGAAGAGCTTTATGGCCTGAGGGTCTCGCCCGACCTGATCAGCCGTGTCACCGATGC
CGTGCTGGGGGAGGTCCGGGAATGGCAGCACCGGGCACTGGACCGGATGTATCCGATCGTCATTTTCGACGCGCTGCGGGTTAAGATCCGCGATGCCGAC
AGCCGGATGGTCAAGAACAAGGCCGTTTACATCGCCCTCGGCGTCACCCGCGAGGGGGAGCGGGAGGTTCTGGGCCTGTGGATCGCCGACAACGAGGGGG
CCAAGTTCTGGCTGTCGGTGATGAATGAACTGCGCAACCGGGGCGTTCAGGACATCCTGATCGCCGTTGTTGACGGGCTGAAGGGCTTCCCGGAGGCTAT
CGCCGCGGCCTTCCCCGAGACCATGGTCCAGACCTGTATCGTCCATCTGATCCGGCATTCGATGAACTTCTGCAGCTGGAAGGACCGCAAGGCAGTGGCC
GCCGATCTGCGCCCGATCTACGAGGCCCCGACCGCCGAGGAGGCCGCCCGCCAGTTGGAGGTATTCGAGGAAAAGTGGGCCGGGAAATACCCGTCCATCG
CCCCGGCCTGGCGCCGGGCATGGGCCGAGGTCACGCCGTTCTATGCCTTCAGCGCGGCGATCCGGAAGATCATCTATACGACCAACGCAGTGGAATCGCT
GAACCGGGTGCTGCGGAAAACGCTGAAGACCAAGGGCTCCTTCCCGACCGAGGAAGCTGCCACGAAGCTGATCTTCCTGGCCATCCGCAACTTCGAGAAG
GGCGGCCGCGCCGTCCGGGAGTGGGTTGCGGCCCGCAATCAGCTGGCCATAATGTTCGCCGGGCGCTTCGACGCCTGAACGTATCTGAAAACCGCATGGG
CCCGCCCAGATACACAGAGTTCCTGACACTCCC
AGGGCTGCAAGCGGCCTGAGGATCTGCTGGGCGATGCCGGGCTGATGAAAGAGCTGAAGGTCCGGCTGATGGAACGGATGCTGGGGGCCGAACTGACCGC
CCATCTGGGCTATGAGGCCGGTGCGGTGCCGCCAGCCGAACAGAGCAACCGCCGGAACGGGGTTGCGGCGAAGCGCGTGAAGGGTTCGGACGGCGAGGTG
CCGCTTTTGGTTCCGCGTGACCGGGACGGCAGTTTCGAGCCGGAGCTGGTGAAGAAAGGCCAGACCCGGATCGACGGGGTTGATGACAAGATCATCGGGC
TCTATGCCGCCGGGCTGTCGGTGCGCGACATCCAGGCCCATCTGGAAGAGCTTTATGGCCTGAGGGTCTCGCCCGACCTGATCAGCCGTGTCACCGATGC
CGTGCTGGGGGAGGTCCGGGAATGGCAGCACCGGGCACTGGACCGGATGTATCCGATCGTCATTTTCGACGCGCTGCGGGTTAAGATCCGCGATGCCGAC
AGCCGGATGGTCAAGAACAAGGCCGTTTACATCGCCCTCGGCGTCACCCGCGAGGGGGAGCGGGAGGTTCTGGGCCTGTGGATCGCCGACAACGAGGGGG
CCAAGTTCTGGCTGTCGGTGATGAATGAACTGCGCAACCGGGGCGTTCAGGACATCCTGATCGCCGTTGTTGACGGGCTGAAGGGCTTCCCGGAGGCTAT
CGCCGCGGCCTTCCCCGAGACCATGGTCCAGACCTGTATCGTCCATCTGATCCGGCATTCGATGAACTTCTGCAGCTGGAAGGACCGCAAGGCAGTGGCC
GCCGATCTGCGCCCGATCTACGAGGCCCCGACCGCCGAGGAGGCCGCCCGCCAGTTGGAGGTATTCGAGGAAAAGTGGGCCGGGAAATACCCGTCCATCG
CCCCGGCCTGGCGCCGGGCATGGGCCGAGGTCACGCCGTTCTATGCCTTCAGCGCGGCGATCCGGAAGATCATCTATACGACCAACGCAGTGGAATCGCT
GAACCGGGTGCTGCGGAAAACGCTGAAGACCAAGGGCTCCTTCCCGACCGAGGAAGCTGCCACGAAGCTGATCTTCCTGGCCATCCGCAACTTCGAGAAG
GGCGGCCGCGCCGTCCGGGAGTGGGTTGCGGCCCGCAATCAGCTGGCCATAATGTTCGCCGGGCGCTTCGACGCCTGAACGTATCTGAAAACCGCATGGG
CCCGCCCAGATACACAGAGTTCCTGACACTCCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1215 bp | 404 aa | 64 | 1278 | + | No |
Chemistry : DDE
ORF sequence :
MTISNELLDELLKGCKRPEDLLGDAGLMKELKVRLMERMLGAELTAHLGYEAGAVPPAEQSNRRNGVAAKRVKGSDGEVPLLVPRDRDGSFEPELVKKGQ
TRIDGVDDKIIGLYAAGLSVRDIQAHLEELYGLRVSPDLISRVTDAVLGEVREWQHRALDRMYPIVIFDALRVKIRDADSRMVKNKAVYIALGVTREGER
EVLGLWIADNEGAKFWLSVMNELRNRGVQDILIAVVDGLKGFPEAIAAAFPETMVQTCIVHLIRHSMNFCSWKDRKAVAADLRPIYEAPTAEEAARQLEV
FEEKWAGKYPSIAPAWRRAWAEVTPFYAFSAAIRKIIYTTNAVESLNRVLRKTLKTKGSFPTEEAATKLIFLAIRNFEKGGRAVREWVAARNQLAIMFAG
RFDA
TRIDGVDDKIIGLYAAGLSVRDIQAHLEELYGLRVSPDLISRVTDAVLGEVREWQHRALDRMYPIVIFDALRVKIRDADSRMVKNKAVYIALGVTREGER
EVLGLWIADNEGAKFWLSVMNELRNRGVQDILIAVVDGLKGFPEAIAAAFPETMVQTCIVHLIRHSMNFCSWKDRKAVAADLRPIYEAPTAEEAARQLEV
FEEKWAGKYPSIAPAWRRAWAEVTPFYAFSAAIRKIIYTTNAVESLNRVLRKTLKTKGSFPTEEAATKLIFLAIRNFEKGGRAVREWVAARNQLAIMFAG
RFDA
Blast result :
Comments
ISPye43 is 71% aa similar to ISXax1.
ISPye43 was identified by in silico sequence analysis of Paracoccus yeei strains: CCUG 32053 (6 copies of ISPye43 and isoforms) and TT13 (4 copies of isoforms of ISPye43).
ISPye43 was identified by in silico sequence analysis of Paracoccus yeei strains: CCUG 32053 (6 copies of ISPye43 and isoforms) and TT13 (4 copies of isoforms of ISPye43).
References