ISSsu13
- Family ISL3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP002651.1 | ND | Streptococcus suis | Streptococcus suis ST1 |
DNA section
IS Length : 1414 bp
Ends
IR Length : 20/25
IRL : GGCTCTATAATATCTGTAGTGGGTAAATCCACTGTAGAGATTATGGAGCC
IRR : GGCTCTTTGTCAACTGTAGTGGGTAGACGAAAAGCTAACACCTAGAGAGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAATCCCCCGT | AATAAATC | TTATTACGGG | 8 |
DNA sequence
GGCTCTATAATATCTGTAGTGGGTAAATCCACTGTAGAGATTATGGAGCCTTTTTGAGTATATACAAAAAGTCCCATATGACCTATAATGAAAAGCAACC
ACACTCACATTAGAAAGACTCATATGGAACAACTTTATCATACCACAGAACTAATTGGAATCAAAGACAAAAACATCAAAATTCTCTTCATTTTGAAACA
TCAGACCCATCTAGAAATCAGGGCAAAGCTAGATTACGACAGCCCTCGTTGTCCTCATTGCCAAGGAAAGTGTATCAAGTACGACTTTCAAAAGTCGTCA
AAGATTCCGATTTTGGATTGTCAGGGCTTTCCGACCCTCCTCTTGCTTAAGAAACGGCGGTTTCAATGCAAATCTTGCCAAAAAGTGACTGTAACTGAGA
CAGCTCTAGTCAAGAAAAACTGTCAGATTTCCCTACCTATTTGGGAGAAAGTGACACAACTCCATACAGAAAACATGACCAATATAGCCATCGCTAGGAG
ATTACATATCTCCGTATCGGTCGTCCAGAGGAAACTGGCTCAGTTTCAATTGGAGCATGATTTTACGAAATTACCAAAAGTCTTGAGTTGGGATGAATTT
AGTCGGAACAAGGGAAAACTCGCCTTTATTGCTCAGAATTTTGAGACGAGATCGATTGTGACCATTCTTGACAACAACCGCCAAACCACCATCAAGAACT
ATTTCTACAAGTATCCTAGGGCGGTCAGAGAAACTGTCGAGGTCGTAACAGTGGACATGTCGGGTAGCTATATTCCCATCATCAAAAAACTATTTCCAAG
AGCTAAAATTGTCCTTGATAGATTTCACATTATCCAACACATGAGCCGTGCTATGATGACGACTAGAATTGATATTATGAAGACTTTCGATACGCATTCC
CTACCTTATCGATCCATGAAAAATCACTGGCGTATTCTCCAAAAAGATAGTCGAAAACTGTCTCTGAATCGCTTCTTTTCTCGCACTTTTGGGCAAACAG
TAACACCGAGAGAGGTTGTCCAGAAGACATTGAATTTCTCTGAGGAACTGAAATTCTATTACGAACTCTATCAGATCCTTCTCTTCCATTTCCAAGAGAT
GAACTCGAAATATTTCTTCGAGCTTCTAGAAGACAATCTGGATCTTGTCAATCCTGCCTTTAAAACTGTTTTTAAAACTTTTCTAAAGTATAAAACGTAC
ATCACGAACGCCATGGAGCTTCCATATTCCAACGCTAAGCTGGAAGCGACCAATAAACTCATCAAAGACATCAAGAGGCAAGCGTTCGGCTTTAGGAACT
TTACGAACTTTAAAACAAAGATATATATTGCTTTAAACATCAAAAATGAGAGAACGAATTTCGTCCTCTCTAGGTGTTAGCTTTTCGTCTACCCACTACA
GTTGACAAAGAGCC
ACACTCACATTAGAAAGACTCATATGGAACAACTTTATCATACCACAGAACTAATTGGAATCAAAGACAAAAACATCAAAATTCTCTTCATTTTGAAACA
TCAGACCCATCTAGAAATCAGGGCAAAGCTAGATTACGACAGCCCTCGTTGTCCTCATTGCCAAGGAAAGTGTATCAAGTACGACTTTCAAAAGTCGTCA
AAGATTCCGATTTTGGATTGTCAGGGCTTTCCGACCCTCCTCTTGCTTAAGAAACGGCGGTTTCAATGCAAATCTTGCCAAAAAGTGACTGTAACTGAGA
CAGCTCTAGTCAAGAAAAACTGTCAGATTTCCCTACCTATTTGGGAGAAAGTGACACAACTCCATACAGAAAACATGACCAATATAGCCATCGCTAGGAG
ATTACATATCTCCGTATCGGTCGTCCAGAGGAAACTGGCTCAGTTTCAATTGGAGCATGATTTTACGAAATTACCAAAAGTCTTGAGTTGGGATGAATTT
AGTCGGAACAAGGGAAAACTCGCCTTTATTGCTCAGAATTTTGAGACGAGATCGATTGTGACCATTCTTGACAACAACCGCCAAACCACCATCAAGAACT
ATTTCTACAAGTATCCTAGGGCGGTCAGAGAAACTGTCGAGGTCGTAACAGTGGACATGTCGGGTAGCTATATTCCCATCATCAAAAAACTATTTCCAAG
AGCTAAAATTGTCCTTGATAGATTTCACATTATCCAACACATGAGCCGTGCTATGATGACGACTAGAATTGATATTATGAAGACTTTCGATACGCATTCC
CTACCTTATCGATCCATGAAAAATCACTGGCGTATTCTCCAAAAAGATAGTCGAAAACTGTCTCTGAATCGCTTCTTTTCTCGCACTTTTGGGCAAACAG
TAACACCGAGAGAGGTTGTCCAGAAGACATTGAATTTCTCTGAGGAACTGAAATTCTATTACGAACTCTATCAGATCCTTCTCTTCCATTTCCAAGAGAT
GAACTCGAAATATTTCTTCGAGCTTCTAGAAGACAATCTGGATCTTGTCAATCCTGCCTTTAAAACTGTTTTTAAAACTTTTCTAAAGTATAAAACGTAC
ATCACGAACGCCATGGAGCTTCCATATTCCAACGCTAAGCTGGAAGCGACCAATAAACTCATCAAAGACATCAAGAGGCAAGCGTTCGGCTTTAGGAACT
TTACGAACTTTAAAACAAAGATATATATTGCTTTAAACATCAAAAATGAGAGAACGAATTTCGTCCTCTCTAGGTGTTAGCTTTTCGTCTACCCACTACA
GTTGACAAAGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1257 bp | 418 aa | 124 | 1380 | + | No |
Chemistry : Unknow
ORF sequence :
MEQLYHTTELIGIKDKNIKILFILKHQTHLEIRAKLDYDSPGCPHCQRKCIKYDFQKSSKIPILDCQGFPTLLLLKKRRFQCKSCQKVTVTETALVKKNC
QISLPIWEKVTQLHTENMTNIAIARRLHISVSVVQRKLAQFQLEHDFTKLPKVLSWDEFSRNKGKLAFIAQNFETRSIVTILDNNRQTTIKNYFYKYPRA
VRETVEVVTVDMSGSYIPIIKKLFPRAKIVLDRFHIIQHMSRAMMTTRIDIMKTFDTHSLPYRSMKNHWRILQKDSRKLSLNRFFSRTFGQTVTPREVVQ
KTLNFSEELKFYYELYQILLFHFQEMNSKYFFELLEDNLDLVNPAFKTVFKTFLKYKTYITNAMELPYSNAKLEATNKLIKDIKRQAFGFRNFTNFKTKI
YIALNIKNERTNFVLSRYELFVYPLQLTKSQEKTPAYEIILS
QISLPIWEKVTQLHTENMTNIAIARRLHISVSVVQRKLAQFQLEHDFTKLPKVLSWDEFSRNKGKLAFIAQNFETRSIVTILDNNRQTTIKNYFYKYPRA
VRETVEVVTVDMSGSYIPIIKKLFPRAKIVLDRFHIIQHMSRAMMTTRIDIMKTFDTHSLPYRSMKNHWRILQKDSRKLSLNRFFSRTFGQTVTPREVVQ
KTLNFSEELKFYYELYQILLFHFQEMNSKYFFELLEDNLDLVNPAFKTVFKTFLKYKTYITNAMELPYSNAKLEATNKLIKDIKRQAFGFRNFTNFKTKI
YIALNIKNERTNFVLSRYELFVYPLQLTKSQEKTPAYEIILS
Blast result :
Comments
ISSsu13 is 77% aa similar to IS1193D.
References