ISSsu13

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP002651.1 ND Streptococcus suis
Streptococcus suis ST1
DNA section
IS Length : 1414 bp

Ends


IR Length : 20/25

IRL : GGCTCTATAATATCTGTAGTGGGTAAATCCACTGTAGAGATTATGGAGCC
IRR : GGCTCTTTGTCAACTGTAGTGGGTAGACGAAAAGCTAACACCTAGAGAGG

Insertion site


Left flankDirect repeatRight flankDR Length
AAATCCCCCGTAATAAATCTTATTACGGG8

DNA sequence

GGCTCTATAATATCTGTAGTGGGTAAATCCACTGTAGAGATTATGGAGCCTTTTTGAGTATATACAAAAAGTCCCATATGACCTATAATGAAAAGCAACC
ACACTCACATTAGAAAGACTCATATGGAACAACTTTATCATACCACAGAACTAATTGGAATCAAAGACAAAAACATCAAAATTCTCTTCATTTTGAAACA
TCAGACCCATCTAGAAATCAGGGCAAAGCTAGATTACGACAGCCCTCGTTGTCCTCATTGCCAAGGAAAGTGTATCAAGTACGACTTTCAAAAGTCGTCA
AAGATTCCGATTTTGGATTGTCAGGGCTTTCCGACCCTCCTCTTGCTTAAGAAACGGCGGTTTCAATGCAAATCTTGCCAAAAAGTGACTGTAACTGAGA
CAGCTCTAGTCAAGAAAAACTGTCAGATTTCCCTACCTATTTGGGAGAAAGTGACACAACTCCATACAGAAAACATGACCAATATAGCCATCGCTAGGAG
ATTACATATCTCCGTATCGGTCGTCCAGAGGAAACTGGCTCAGTTTCAATTGGAGCATGATTTTACGAAATTACCAAAAGTCTTGAGTTGGGATGAATTT
AGTCGGAACAAGGGAAAACTCGCCTTTATTGCTCAGAATTTTGAGACGAGATCGATTGTGACCATTCTTGACAACAACCGCCAAACCACCATCAAGAACT
ATTTCTACAAGTATCCTAGGGCGGTCAGAGAAACTGTCGAGGTCGTAACAGTGGACATGTCGGGTAGCTATATTCCCATCATCAAAAAACTATTTCCAAG
AGCTAAAATTGTCCTTGATAGATTTCACATTATCCAACACATGAGCCGTGCTATGATGACGACTAGAATTGATATTATGAAGACTTTCGATACGCATTCC
CTACCTTATCGATCCATGAAAAATCACTGGCGTATTCTCCAAAAAGATAGTCGAAAACTGTCTCTGAATCGCTTCTTTTCTCGCACTTTTGGGCAAACAG
TAACACCGAGAGAGGTTGTCCAGAAGACATTGAATTTCTCTGAGGAACTGAAATTCTATTACGAACTCTATCAGATCCTTCTCTTCCATTTCCAAGAGAT
GAACTCGAAATATTTCTTCGAGCTTCTAGAAGACAATCTGGATCTTGTCAATCCTGCCTTTAAAACTGTTTTTAAAACTTTTCTAAAGTATAAAACGTAC
ATCACGAACGCCATGGAGCTTCCATATTCCAACGCTAAGCTGGAAGCGACCAATAAACTCATCAAAGACATCAAGAGGCAAGCGTTCGGCTTTAGGAACT
TTACGAACTTTAAAACAAAGATATATATTGCTTTAAACATCAAAAATGAGAGAACGAATTTCGTCCTCTCTAGGTGTTAGCTTTTCGTCTACCCACTACA
GTTGACAAAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1257 bp418 aa1241380+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MEQLYHTTELIGIKDKNIKILFILKHQTHLEIRAKLDYDSPGCPHCQRKCIKYDFQKSSKIPILDCQGFPTLLLLKKRRFQCKSCQKVTVTETALVKKNC
QISLPIWEKVTQLHTENMTNIAIARRLHISVSVVQRKLAQFQLEHDFTKLPKVLSWDEFSRNKGKLAFIAQNFETRSIVTILDNNRQTTIKNYFYKYPRA
VRETVEVVTVDMSGSYIPIIKKLFPRAKIVLDRFHIIQHMSRAMMTTRIDIMKTFDTHSLPYRSMKNHWRILQKDSRKLSLNRFFSRTFGQTVTPREVVQ
KTLNFSEELKFYYELYQILLFHFQEMNSKYFFELLEDNLDLVNPAFKTVFKTFLKYKTYITNAMELPYSNAKLEATNKLIKDIKRQAFGFRNFTNFKTKI
YIALNIKNERTNFVLSRYELFVYPLQLTKSQEKTPAYEIILS

 

Blast result :
Comments
ISSsu13 is 77% aa similar to IS1193D.
References