ISPye25
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP020444 | ND | Paracoccus yeei | Paracoccus yeei Paracoccus yeei FDAARGOS_252 |
DNA section
IS Length : 1452 bp
Ends
IR Length : 9
IRL : ATGCCGTAACGGGGCCTGCGTCTCGACCCGCCCGTTGCTGTTGCAAGATC
IRR : TCGGTAACGGGGTCATCCCAGTCAAGCGATTTTGCGCATACGGGATGTGC
Comments : Insertion within another IS (isoform of ISPye24) enabled precisely defining ends and DR's. IRs are not at the termini : 5 bp between IRL and left end and 3 bp for the IRR.
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
agcgagaacg | AG | tcctgaccct | 2 |
DNA sequence
ATGCCGTAACGGGGCCTGCGTCTCGACCCGCCCGTTGCTGTTGCAAGATCGAGGGCAAGCTGACGCCATTCCCGTATTGGATCCACATGGAGGAGTGCGG
GATGAAGCTGTTTGTCGGGCTGGATGTGTCGCTGGAGAAGACCGCGATCTGCGTGATCAGCGCGCATGGGAAGATCGTGAAGGAGGCGCAGGTGGCCAGC
GAGCCCGAAGCGCTTTCGTGCTGGATCTGCGATCAGAACGGCGCAATTGCCGCCGTCGGGCTTGAGGCTGGCCCCTTGTCGCAGTGGTTGCATCGCGGGT
TGTCAGATGCGGGACTACCTGTCGTTCTGATGGAAACCAGACAGGTAAAAGGCGCCCTGAAGGCCATGCCGATCAAGACGGACCGGCGGGATGCAGAGGG
TATTGCACGTCTGCTTCATCTTGGTTGGTTCCGACCCGTTCATTGCAAATCGGTGTCTGCACAGGAGGTTAGGGCAGTGCTCAGCGCTCGTAAGGCTGTG
CAACAAGGGTTTATCACGCTGGAAATGTCACTGCGCGGTCTGCTGCGGAACTTCGGGCTCAAGGTTGGCACCATATCCCGTGGTAGGTTCGAACAGCGTA
TCCGCGAACTGGCGGCGGGCAATCTGATGCTGGAAGCGGCAACCGAACCCATGCTTCGCGCGCGCTCGGCGCTGCGGCGAGAGTTGGCGGGTCTTGAACG
CAATGTCCGTCAACTCGCCCAGGAGGATCCGGTCTGTCGTCGGCTGATGTCGATGCCCGGGATCGGCGCCGTCGTGGCGTTGACCTATCGATCTGCTGTC
GATGATCCCGCTCGCTTCACATCCTCGAAGAAGGTCGGACCGTGGGTCGGCCTGACGCCGTCTCGCAACCAGTCGGGCGAGCGCGACGTCTCGGGCGGGA
TCACCAAGGCAGGCGACGTCAACCTTCGACGCGCGCTGTGCCAGGCGGCAACCGTCATGATGCATCGTGGACGGGCGAGCTGGCTGCGAACCTGGGCGGC
AAAACTTGCGCGCCGTCGTGGTGCCAAGCGCGCGATGGTTGCGCTGGCCCGCCGCATCGCCGTGATCCTGCACCGGATGTGGAAGGATAACACCGATTTC
CGCTTTGACATTCCGGTGCTTCATGCCGGCTGAAAATACAGGTTCCAGATTGCTGCCCGCCTGATCGCGGGCCTTTGAGGTCCCCACGGGACGCGGTTCC
GGTGATGCCGTGCTCAGGACTGATGCCGATCGTATCGAGCACGCCAATGAGATGGGCACACCGGAATTGCATTGAACCAGCATCATGTTGGCGGCCACAG
CGCTGACCACGGACCGAAGCATGCACCCGGGTCGATCTCAGGCGAAGGCTGCCGAACAGGGAAGCAGATCAATTGCTCGAAGAACAAGACCGCGCTCCGG
CGGCACATCCCGTATGCGCAAAATCGCTTGACTGGGATGACCCCGTTACCGA
GATGAAGCTGTTTGTCGGGCTGGATGTGTCGCTGGAGAAGACCGCGATCTGCGTGATCAGCGCGCATGGGAAGATCGTGAAGGAGGCGCAGGTGGCCAGC
GAGCCCGAAGCGCTTTCGTGCTGGATCTGCGATCAGAACGGCGCAATTGCCGCCGTCGGGCTTGAGGCTGGCCCCTTGTCGCAGTGGTTGCATCGCGGGT
TGTCAGATGCGGGACTACCTGTCGTTCTGATGGAAACCAGACAGGTAAAAGGCGCCCTGAAGGCCATGCCGATCAAGACGGACCGGCGGGATGCAGAGGG
TATTGCACGTCTGCTTCATCTTGGTTGGTTCCGACCCGTTCATTGCAAATCGGTGTCTGCACAGGAGGTTAGGGCAGTGCTCAGCGCTCGTAAGGCTGTG
CAACAAGGGTTTATCACGCTGGAAATGTCACTGCGCGGTCTGCTGCGGAACTTCGGGCTCAAGGTTGGCACCATATCCCGTGGTAGGTTCGAACAGCGTA
TCCGCGAACTGGCGGCGGGCAATCTGATGCTGGAAGCGGCAACCGAACCCATGCTTCGCGCGCGCTCGGCGCTGCGGCGAGAGTTGGCGGGTCTTGAACG
CAATGTCCGTCAACTCGCCCAGGAGGATCCGGTCTGTCGTCGGCTGATGTCGATGCCCGGGATCGGCGCCGTCGTGGCGTTGACCTATCGATCTGCTGTC
GATGATCCCGCTCGCTTCACATCCTCGAAGAAGGTCGGACCGTGGGTCGGCCTGACGCCGTCTCGCAACCAGTCGGGCGAGCGCGACGTCTCGGGCGGGA
TCACCAAGGCAGGCGACGTCAACCTTCGACGCGCGCTGTGCCAGGCGGCAACCGTCATGATGCATCGTGGACGGGCGAGCTGGCTGCGAACCTGGGCGGC
AAAACTTGCGCGCCGTCGTGGTGCCAAGCGCGCGATGGTTGCGCTGGCCCGCCGCATCGCCGTGATCCTGCACCGGATGTGGAAGGATAACACCGATTTC
CGCTTTGACATTCCGGTGCTTCATGCCGGCTGAAAATACAGGTTCCAGATTGCTGCCCGCCTGATCGCGGGCCTTTGAGGTCCCCACGGGACGCGGTTCC
GGTGATGCCGTGCTCAGGACTGATGCCGATCGTATCGAGCACGCCAATGAGATGGGCACACCGGAATTGCATTGAACCAGCATCATGTTGGCGGCCACAG
CGCTGACCACGGACCGAAGCATGCACCCGGGTCGATCTCAGGCGAAGGCTGCCGAACAGGGAAGCAGATCAATTGCTCGAAGAACAAGACCGCGCTCCGG
CGGCACATCCCGTATGCGCAAAATCGCTTGACTGGGATGACCCCGTTACCGA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1032 bp | 343 aa | 102 | 1133 | + | No |
Chemistry : DEDD
ORF sequence :
MKLFVGLDVSLEKTAICVISAHGKIVKEAQVASEPEALSCWICDQNGAIAAVGLEAGPLSQWLHRGLSDAGLPVVLMETRQVKGALKAMPIKTDRRDAEG
IARLLHLGWFRPVHCKSVSAQEVRAVLSARKAVQQGFITLEMSLRGLLRNFGLKVGTISRGRFEQRIRELAAGNLMLEAATEPMLRARSALRRELAGLER
NVRQLAQEDPVCRRLMSMPGIGAVVALTYRSAVDDPARFTSSKKVGPWVGLTPSRNQSGERDVSGGITKAGDVNLRRALCQAATVMMHRGRASWLRTWAA
KLARRRGAKRAMVALARRIAVILHRMWKDNTDFRFDIPVLHAG
IARLLHLGWFRPVHCKSVSAQEVRAVLSARKAVQQGFITLEMSLRGLLRNFGLKVGTISRGRFEQRIRELAAGNLMLEAATEPMLRARSALRRELAGLER
NVRQLAQEDPVCRRLMSMPGIGAVVALTYRSAVDDPARFTSSKKVGPWVGLTPSRNQSGERDVSGGITKAGDVNLRRALCQAATVMMHRGRASWLRTWAA
KLARRRGAKRAMVALARRIAVILHRMWKDNTDFRFDIPVLHAG
Blast result :
Comments
ISPye25 is 73% aa similar to ISRhru3.
ISPye25 was identified by in silico sequence analysis of Paracoccus yeei strain FDAARGOS_252 (there are 3 copies od ISPye25 present in the genome, all inserted in the same position within the IR of ISPye24).
ISPye25 was identified by in silico sequence analysis of Paracoccus yeei strain FDAARGOS_252 (there are 3 copies od ISPye25 present in the genome, all inserted in the same position within the IR of ISPye24).
References
1] Chmielowska C., Szuplewska M., Bartosik D. (2018) Direct submission.
2] Goldberg,B., Campos,J., Tallon,L., Sadzewicz,L., Sengamalay,N., Ott,S., Godinez,A., Nagaraj,S., Vavikolanu,K., Aluvathingal,J., Nadendla,S. and Sichtig,H. (2017) Direct GenBank submission.
2] Goldberg,B., Campos,J., Tallon,L., Sadzewicz,L., Sengamalay,N., Ott,S., Godinez,A., Nagaraj,S., Vavikolanu,K., Aluvathingal,J., Nadendla,S. and Sichtig,H. (2017) Direct GenBank submission.