ISPye23
- Family IS5
- Group IS903
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CP020442 | ND | Paracoccus yeei | Paracoccus yeei Paracoccus yeei FDAARGOS_252 |
DNA section
IS Length : 1051 bp
Ends
IR Length : 16
IRL : GGCGTTGATGCAGAACCCGTGCGGGGGGATTCACTTGAGGAATTCCTGGG
IRR : GGCGTTGATGCAGAACTCCCGCTTCGGGAGTGAGTGCCCCTTACCCCAGC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| agtcctgcac | gatcttgccc | 0 |
DNA sequence
GGCGTTGATGCAGAACCCGTGCGGGGGGATTCACTTGAGGAATTCCTGGGGTTAGGGCGGGGGAATGAGCAGGCCCGCATCACCCCGCTACCGCACGACG
AACTGGAAGTCGTACAATGATGCCCTGAAGCAGCGCGGGTCGCTGCTGATCTGGCTGGACAAAGAGATGGTGTGGCGCGCGCCCAAGGCGGGGAGTAACG
GGCGGCCGCCGGTGTTCAGCGATGGCGCAATCCAGTTCTGCCTGATGGTGAAGGTCCTGTTCGGCCTGCCGTTGCGGCAAACCACAGGGATGGTGGCGAG
CATCCTGTCAATGGCAGAGCTTGACTGGCCGGTGCCGGACTTCTCGACCCTGAGCCGCCGGCAAAAGACCATCACGGTGCAGATCCCCAGCCGCCGTGCG
GCGGGACCACTGAACCTGCTGGTCGACAGCACCGGGATCAAGTTCCTCGGGGACGGCGAATGGCTGGCCCGCAAGCATGGCAGTCACCGCAGACGCCAGT
ATCGCAAGGTCCATCTAGCGATGGACACCGCCACCGGCGACGTCCGGGCGGTGGCGTTCACCTCAAGCGACAAGGGCGACAGCCCCGTCCTGCCGGACCT
TCTGGACCAGTTCCCACCAGACGAGCAGATCGGCACCGTGACCGGCGACGGGGCTTTCGACACCCGACGCTGCCACACCGCGATCCTCGAGCGTGGCGGC
ACGGCGGTCATTCCGATCCGCAGGAATGGCCGCCGCTGGAAAGAGGACGGCCCCGCAGCCAAGGCCCGAAACGACATCCTGCGGGCAACGCAGCGTCTCG
GGCGGGCGATCTGGAAACGATGGTCCGGCTATCACGCCCGAAGCCGGATCGAAGCCCGGATGCGGTGCCTCAAGTCGTTCGGCGAGAGGATCGCCTCACG
AGACCCCGACCGCCAGACCGCCGAAATCCACATCCGCGTCGCGCTCATGAACCGCTTCAATGCCCTCGGCACCGCCGAGATCGAGCGCGTCGCCTGAAGC
CGCTGGGGTAAGGGGCACTCACTCCCGAAGCGGGAGTTCTGCATCAACGCC
AACTGGAAGTCGTACAATGATGCCCTGAAGCAGCGCGGGTCGCTGCTGATCTGGCTGGACAAAGAGATGGTGTGGCGCGCGCCCAAGGCGGGGAGTAACG
GGCGGCCGCCGGTGTTCAGCGATGGCGCAATCCAGTTCTGCCTGATGGTGAAGGTCCTGTTCGGCCTGCCGTTGCGGCAAACCACAGGGATGGTGGCGAG
CATCCTGTCAATGGCAGAGCTTGACTGGCCGGTGCCGGACTTCTCGACCCTGAGCCGCCGGCAAAAGACCATCACGGTGCAGATCCCCAGCCGCCGTGCG
GCGGGACCACTGAACCTGCTGGTCGACAGCACCGGGATCAAGTTCCTCGGGGACGGCGAATGGCTGGCCCGCAAGCATGGCAGTCACCGCAGACGCCAGT
ATCGCAAGGTCCATCTAGCGATGGACACCGCCACCGGCGACGTCCGGGCGGTGGCGTTCACCTCAAGCGACAAGGGCGACAGCCCCGTCCTGCCGGACCT
TCTGGACCAGTTCCCACCAGACGAGCAGATCGGCACCGTGACCGGCGACGGGGCTTTCGACACCCGACGCTGCCACACCGCGATCCTCGAGCGTGGCGGC
ACGGCGGTCATTCCGATCCGCAGGAATGGCCGCCGCTGGAAAGAGGACGGCCCCGCAGCCAAGGCCCGAAACGACATCCTGCGGGCAACGCAGCGTCTCG
GGCGGGCGATCTGGAAACGATGGTCCGGCTATCACGCCCGAAGCCGGATCGAAGCCCGGATGCGGTGCCTCAAGTCGTTCGGCGAGAGGATCGCCTCACG
AGACCCCGACCGCCAGACCGCCGAAATCCACATCCGCGTCGCGCTCATGAACCGCTTCAATGCCCTCGGCACCGCCGAGATCGAGCGCGTCGCCTGAAGC
CGCTGGGGTAAGGGGCACTCACTCCCGAAGCGGGAGTTCTGCATCAACGCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 904 bp | 310 aa | 65 | 968 | + | No |
Chemistry : DDE
ORF sequence :
MSRPASPRYRTTNWKSYNDALKQRGSLLIWLDKEMVWRAPKAGSNGRPPVFSDGAIQFCLMVKVLFGLPLRQTTGMVASILSMAELDWPVPDFSTLSRRQ
KTITVQIPSRRAAGPLNLLVDSTGIKFLGDGEWLARKHGSHRRRQYRKVHLAMDTATGDVRAVAFTSSDKGDSPVLPDLLDQFPPDEQIGTVTGDGAFDT
RRCHTAILERGGTAVIPIRRNGRRWKEDGPAAKARNDILRATQRLGRAIWKRWSGYHARSRIEARMRCLKSFGERIASRDPDRQTAEIHIRVALMNRFNA
LGTAEIERVA
KTITVQIPSRRAAGPLNLLVDSTGIKFLGDGEWLARKHGSHRRRQYRKVHLAMDTATGDVRAVAFTSSDKGDSPVLPDLLDQFPPDEQIGTVTGDGAFDT
RRCHTAILERGGTAVIPIRRNGRRWKEDGPAAKARNDILRATQRLGRAIWKRWSGYHARSRIEARMRCLKSFGERIASRDPDRQTAEIHIRVALMNRFNA
LGTAEIERVA
Blast result :
Comments
ISPye23 is 94% aa similar to ISPpa3.
ISPye23 was identified by in silico sequence analysis of Paracoccus yeei strain FDAARGOS_252. Reconstructed - insertion of 2 copies of ISPye21 within the IRs.
ISPye23 was identified by in silico sequence analysis of Paracoccus yeei strain FDAARGOS_252. Reconstructed - insertion of 2 copies of ISPye21 within the IRs.
References
1] Chmielowska C., Szuplewska M., Bartosik D. (2018) Direct submission.
2] Goldberg,B., Campos,J., Tallon,L., Sadzewicz,L., Sengamalay,N., Ott,S., Godinez,A., Nagaraj,S., Vavikolanu,K., Aluvathingal,J., Nadendla,S. and Sichtig,H. (2017) Direct GenBank submission.
2] Goldberg,B., Campos,J., Tallon,L., Sadzewicz,L., Sengamalay,N., Ott,S., Godinez,A., Nagaraj,S., Vavikolanu,K., Aluvathingal,J., Nadendla,S. and Sichtig,H. (2017) Direct GenBank submission.