ISPye16

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP020442 ND Paracoccus yeei
Paracoccus yeei
Paracoccus yeei FDAARGOS_252
DNA section
IS Length : 1355 bp

Ends


IR Length : 13/14

IRL : TAATGGGATGGCCCGCCCCGCGCCCCGGCGTAGCATCGTGGCACCACCAT
IRR : TGTATGGTCCGCCCCGCTATTGCAAGGTTTTCGTGCGTGGCCGTCCGGCT

Comments : 7 nt separate IRL from the left-hand end, and 3 nt separtae IRR from rigth end. Insertion within another IS enabled precisely defining ends.

Insertion site


Left flankDirect repeatRight flankDR Length
gccctaccacttttttgcaa0
gcgtcaccatttttttgcaa0

DNA sequence

TAATGGGATGGCCCGCCCCGCGCCCCGGCGTAGCATCGTGGCACCACCATCAAACGGAGAGAAAGGATGCGCACAAAACCTGACCCTCAAACGGCGGCCT
TCGGCATCGACATCGGCAAGAAGGTGTTCCACGTCGTCGCCCTGAACGCCGCTGGATCGGTGATTCAGCGCGCGAAGTTCTCGCGCGACACGTTGCTGGC
CTTCTTCGATGCCGCGCCGAATGCACTCATCGGCATGGAGGCCTGCCCGGGCTCGCAATGGCTGGCGCGTCGGCTTGTCGCGATGGGCCATGATGCCCGG
ATCATTCCGGCGCGCTTCGTGAAGCCTTATGTCAAATCGAACAAGACCGACACGGTCGATGCGGCGGCGATTGCAGAGGCGGTGACGCGGCCGACGATGC
GCTTCGTCGAGGTTCGCACACCCGAGCAGATCGATCTGCAAGCCCTGCATCGCATCCGCGACCGGCTCGTGGGGCAGCGGACGGCGCTGATCAACCAGGC
GCGAGCCTTCTGCCTTGAATATGGACTGGCGATGCGCGTCGGCGCTGGCGGCTTTCATGCCGACATCCGTCGGCATCTGGGCAATGTGGAGAATGACCTG
ACCCCCGCCATGCGGGTGCTGCTCGAAGAGCTGCTCGATGACCTCGCCTACATCGAAGGGCGCATCAGGGCTGTGACCGGCAAGGTCGAAGCCTATGCCA
GCCAGCACGACGCCGTCAGTCGCCTGGTGACCATCCCGGGCATCGGAGCTCTCGGCGCGACCGCGATCGTCGCAGCCGCAGGGGACGGACGGCAATTCCG
CAAGGCTCGCGATCTGGCTGCCTGGTTGGGGCTGGTGCCGGCAGAGCATTCGACCGGGGGCAAGCAGACCCTTCTGGGCATCAGCAAACGCGGCAATCGC
TATGTGCGGCGACTGATCATTCATGGCGCCCGGTCCTGCCTTCTGCATCTGAACCGGGCGAACCATGCCCTCGGTGGCTGGCTCTCAGCCCTTGAGGCAC
GAACCCACCGCAACAAGGCCGTCGTCGCCTTGGCAAACAAGCTGACCCGGATCGTATGGGCTATCCTCACAAGGCCCGGCGCCATCTACCTGCCGTCGAG
AGGCGCAGCGTTAAGCTGACCCTTCGGCCGCAGAACCGATTGCAGGGGAAAGTGATGACCAAACGGTTGATCGACCTGGGGTAAGCCACGCGCAAAAAAG
CGGGACGCGATCCCGCACCACTAATCTGGAACCCGAGGGGCGGATCTCATCAAGGCCTTGCCGCCAAAAGCGGCTGACTGATCAGAGGCCGGATACATTT
ACGCAAGCCGGACGGCCACGCACGAAAACCTTGCAATAGCGGGGCGGACCATACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1053 bp350 aa671119+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MRTKPDPQTAAFGIDIGKKVFHVVALNAAGSVIQRAKFSRDTLLAFFDAAPNALIGMEACPGSQWLARRLVAMGHDARIIPARFVKPYVKSNKTDTVDAA
AIAEAVTRPTMRFVEVRTPEQIDLQALHRIRDRLVGQRTALINQARAFCLEYGLAMRVGAGGFHADIRRHLGNVENDLTPAMRVLLEELLDDLAYIEGRI
RAVTGKVEAYASQHDAVSRLVTIPGIGALGATAIVAAAGDGRQFRKARDLAAWLGLVPAEHSTGGKQTLLGISKRGNRYVRRLIIHGARSCLLHLNRANH
ALGGWLSALEARTHRNKAVVALANKLTRIVWAILTRPGAIYLPSRGAALS

 

Blast result :
Comments
ISPye16 is 64% aa similar to ISBj4.
ISPye16 was identified by in silico nucleotide sequence analysis of Paracoccus yeei strain FDAARGOS_252 (4 copies of this IS present in the genome). All copies are inserted in the same position within another IS (IS3 family).
References
1] Chmielowska C., Szuplewska M., Bartosik D. (2018) Direct submission.
2] Goldberg,B., Campos,J., Tallon,L., Sadzewicz,L., Sengamalay,N., Ott,S., Godinez,A., Nagaraj,S., Vavikolanu,K., Aluvathingal,J., Nadendla,S. and Sichtig,H. (2017) Direct GenBank submission.