ISPye16
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP020442 | ND | Paracoccus yeei | Paracoccus yeei Paracoccus yeei FDAARGOS_252 |
DNA section
IS Length : 1355 bp
Ends
IR Length : 13/14
IRL : TAATGGGATGGCCCGCCCCGCGCCCCGGCGTAGCATCGTGGCACCACCAT
IRR : TGTATGGTCCGCCCCGCTATTGCAAGGTTTTCGTGCGTGGCCGTCCGGCT
Comments : 7 nt separate IRL from the left-hand end, and 3 nt separtae IRR from rigth end. Insertion within another IS enabled precisely defining ends.
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
gccctaccac | ttttttgcaa | 0 | |
gcgtcaccat | ttttttgcaa | 0 |
DNA sequence
TAATGGGATGGCCCGCCCCGCGCCCCGGCGTAGCATCGTGGCACCACCATCAAACGGAGAGAAAGGATGCGCACAAAACCTGACCCTCAAACGGCGGCCT
TCGGCATCGACATCGGCAAGAAGGTGTTCCACGTCGTCGCCCTGAACGCCGCTGGATCGGTGATTCAGCGCGCGAAGTTCTCGCGCGACACGTTGCTGGC
CTTCTTCGATGCCGCGCCGAATGCACTCATCGGCATGGAGGCCTGCCCGGGCTCGCAATGGCTGGCGCGTCGGCTTGTCGCGATGGGCCATGATGCCCGG
ATCATTCCGGCGCGCTTCGTGAAGCCTTATGTCAAATCGAACAAGACCGACACGGTCGATGCGGCGGCGATTGCAGAGGCGGTGACGCGGCCGACGATGC
GCTTCGTCGAGGTTCGCACACCCGAGCAGATCGATCTGCAAGCCCTGCATCGCATCCGCGACCGGCTCGTGGGGCAGCGGACGGCGCTGATCAACCAGGC
GCGAGCCTTCTGCCTTGAATATGGACTGGCGATGCGCGTCGGCGCTGGCGGCTTTCATGCCGACATCCGTCGGCATCTGGGCAATGTGGAGAATGACCTG
ACCCCCGCCATGCGGGTGCTGCTCGAAGAGCTGCTCGATGACCTCGCCTACATCGAAGGGCGCATCAGGGCTGTGACCGGCAAGGTCGAAGCCTATGCCA
GCCAGCACGACGCCGTCAGTCGCCTGGTGACCATCCCGGGCATCGGAGCTCTCGGCGCGACCGCGATCGTCGCAGCCGCAGGGGACGGACGGCAATTCCG
CAAGGCTCGCGATCTGGCTGCCTGGTTGGGGCTGGTGCCGGCAGAGCATTCGACCGGGGGCAAGCAGACCCTTCTGGGCATCAGCAAACGCGGCAATCGC
TATGTGCGGCGACTGATCATTCATGGCGCCCGGTCCTGCCTTCTGCATCTGAACCGGGCGAACCATGCCCTCGGTGGCTGGCTCTCAGCCCTTGAGGCAC
GAACCCACCGCAACAAGGCCGTCGTCGCCTTGGCAAACAAGCTGACCCGGATCGTATGGGCTATCCTCACAAGGCCCGGCGCCATCTACCTGCCGTCGAG
AGGCGCAGCGTTAAGCTGACCCTTCGGCCGCAGAACCGATTGCAGGGGAAAGTGATGACCAAACGGTTGATCGACCTGGGGTAAGCCACGCGCAAAAAAG
CGGGACGCGATCCCGCACCACTAATCTGGAACCCGAGGGGCGGATCTCATCAAGGCCTTGCCGCCAAAAGCGGCTGACTGATCAGAGGCCGGATACATTT
ACGCAAGCCGGACGGCCACGCACGAAAACCTTGCAATAGCGGGGCGGACCATACA
TCGGCATCGACATCGGCAAGAAGGTGTTCCACGTCGTCGCCCTGAACGCCGCTGGATCGGTGATTCAGCGCGCGAAGTTCTCGCGCGACACGTTGCTGGC
CTTCTTCGATGCCGCGCCGAATGCACTCATCGGCATGGAGGCCTGCCCGGGCTCGCAATGGCTGGCGCGTCGGCTTGTCGCGATGGGCCATGATGCCCGG
ATCATTCCGGCGCGCTTCGTGAAGCCTTATGTCAAATCGAACAAGACCGACACGGTCGATGCGGCGGCGATTGCAGAGGCGGTGACGCGGCCGACGATGC
GCTTCGTCGAGGTTCGCACACCCGAGCAGATCGATCTGCAAGCCCTGCATCGCATCCGCGACCGGCTCGTGGGGCAGCGGACGGCGCTGATCAACCAGGC
GCGAGCCTTCTGCCTTGAATATGGACTGGCGATGCGCGTCGGCGCTGGCGGCTTTCATGCCGACATCCGTCGGCATCTGGGCAATGTGGAGAATGACCTG
ACCCCCGCCATGCGGGTGCTGCTCGAAGAGCTGCTCGATGACCTCGCCTACATCGAAGGGCGCATCAGGGCTGTGACCGGCAAGGTCGAAGCCTATGCCA
GCCAGCACGACGCCGTCAGTCGCCTGGTGACCATCCCGGGCATCGGAGCTCTCGGCGCGACCGCGATCGTCGCAGCCGCAGGGGACGGACGGCAATTCCG
CAAGGCTCGCGATCTGGCTGCCTGGTTGGGGCTGGTGCCGGCAGAGCATTCGACCGGGGGCAAGCAGACCCTTCTGGGCATCAGCAAACGCGGCAATCGC
TATGTGCGGCGACTGATCATTCATGGCGCCCGGTCCTGCCTTCTGCATCTGAACCGGGCGAACCATGCCCTCGGTGGCTGGCTCTCAGCCCTTGAGGCAC
GAACCCACCGCAACAAGGCCGTCGTCGCCTTGGCAAACAAGCTGACCCGGATCGTATGGGCTATCCTCACAAGGCCCGGCGCCATCTACCTGCCGTCGAG
AGGCGCAGCGTTAAGCTGACCCTTCGGCCGCAGAACCGATTGCAGGGGAAAGTGATGACCAAACGGTTGATCGACCTGGGGTAAGCCACGCGCAAAAAAG
CGGGACGCGATCCCGCACCACTAATCTGGAACCCGAGGGGCGGATCTCATCAAGGCCTTGCCGCCAAAAGCGGCTGACTGATCAGAGGCCGGATACATTT
ACGCAAGCCGGACGGCCACGCACGAAAACCTTGCAATAGCGGGGCGGACCATACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1053 bp | 350 aa | 67 | 1119 | + | No |
Chemistry : DEDD
ORF sequence :
MRTKPDPQTAAFGIDIGKKVFHVVALNAAGSVIQRAKFSRDTLLAFFDAAPNALIGMEACPGSQWLARRLVAMGHDARIIPARFVKPYVKSNKTDTVDAA
AIAEAVTRPTMRFVEVRTPEQIDLQALHRIRDRLVGQRTALINQARAFCLEYGLAMRVGAGGFHADIRRHLGNVENDLTPAMRVLLEELLDDLAYIEGRI
RAVTGKVEAYASQHDAVSRLVTIPGIGALGATAIVAAAGDGRQFRKARDLAAWLGLVPAEHSTGGKQTLLGISKRGNRYVRRLIIHGARSCLLHLNRANH
ALGGWLSALEARTHRNKAVVALANKLTRIVWAILTRPGAIYLPSRGAALS
AIAEAVTRPTMRFVEVRTPEQIDLQALHRIRDRLVGQRTALINQARAFCLEYGLAMRVGAGGFHADIRRHLGNVENDLTPAMRVLLEELLDDLAYIEGRI
RAVTGKVEAYASQHDAVSRLVTIPGIGALGATAIVAAAGDGRQFRKARDLAAWLGLVPAEHSTGGKQTLLGISKRGNRYVRRLIIHGARSCLLHLNRANH
ALGGWLSALEARTHRNKAVVALANKLTRIVWAILTRPGAIYLPSRGAALS
Blast result :
Comments
ISPye16 is 64% aa similar to ISBj4.
ISPye16 was identified by in silico nucleotide sequence analysis of Paracoccus yeei strain FDAARGOS_252 (4 copies of this IS present in the genome). All copies are inserted in the same position within another IS (IS3 family).
ISPye16 was identified by in silico nucleotide sequence analysis of Paracoccus yeei strain FDAARGOS_252 (4 copies of this IS present in the genome). All copies are inserted in the same position within another IS (IS3 family).
References
1] Chmielowska C., Szuplewska M., Bartosik D. (2018) Direct submission.
2] Goldberg,B., Campos,J., Tallon,L., Sadzewicz,L., Sengamalay,N., Ott,S., Godinez,A., Nagaraj,S., Vavikolanu,K., Aluvathingal,J., Nadendla,S. and Sichtig,H. (2017) Direct GenBank submission.
2] Goldberg,B., Campos,J., Tallon,L., Sadzewicz,L., Sengamalay,N., Ott,S., Godinez,A., Nagaraj,S., Vavikolanu,K., Aluvathingal,J., Nadendla,S. and Sichtig,H. (2017) Direct GenBank submission.