ISP2

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_004567 ND Lactobacillus plantarum
Lactobacillus plantarum WCFS1
DNA section
IS Length : 1796 bp

Ends


IR Length : 15

IRL : GAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTC
IRR : GAGGCTGTGACATAACTAGCCTCTGTATAAGCAAATGGGACGAGAAACCG

Insertion site


Left flankDirect repeatRight flankDR Length
GGGGAATATTACCCAAAAACGTTTTAATTTAGTGTTTATT0

DNA sequence

GAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGCTTTTGATATAATAGAAAATAAAAAAAGAGCAT
CGGTCGCACCCGATACTCTACGAAATTATCCTCGAAAGGACATTCCTAATATGCAAGATTATTATAACATGAATCAAACCACTTTGAGTATTGCCTTGGA
TTACCAACCAGAAGAGCATCATTCTGCTCGTTACATCAACCAGCTTGTTGAGAGTTTAAAACTAAAATATGATTACCAGTTTGGCCGTCCGCGGGAATAT
AACCTCGGTGCCATGTTAAAACTGGTCCTTTTAGCGTACAGCTATGGCATTTTCAGCAGTCGTAAAATTGAACGGTTTGCCCGTGAAAACAAGCCAGCTG
GGTGGTTAATTGCCGACCAAATTCCGTCCTACCGGACGATTTGTCGCTTTAGAATTTCTGATGAACTGGCCACTTTGACAACCGATAGCTTATCACAACT
AACTCAATATCTTCGTCAAAATGGCATGATTGATGATGTTTCATTTATTGATGGAACTAAGATCCTAGCCGACGCCAACAAGTATAGCTTTGTTTGGAAG
AAGAATACGATACGATTTGACAAGATGAATCGCGAAAAACTCGTTGACCTGTTAGGCGAGCTTCATGAAGCTAAAATTGTCGGTGAAATTCCGGCAGGAT
CAGAGCTGACTCCCGAACTATTGGATATCATGATTAGCAAGGTTGAGGATCACTTAGTGGTCCTTAATGAAACCGTGGAAGCAACTAAGCAGGTTTCCCC
GAACCCAGCCAAACAGCAACGCCGGACTGTTAAATCACAAAAACGTAAGTTGGATAAACGACGTGATAAAATGCGTGAACACCAAGCACAGCAAGCTATT
TATGATCAACGTAACAGCTACTCTAAGACGGATCACGATGCCACCTTTATGCGGGTCAAGGAAGATCCGATGCAAAACGGTCAATTAAAACCTGCCTACA
ACGTTCAAATCGCCACGAGTAATCAGTTCATTACGGGATATCGGCTTTTCCAAAATCCAACCGACACACGAACCTTACAACCGTTTATTGAACATTTAAA
GGCCAACAATGTGTTAGGTCACACCATCGTTGCCGATGCCGGATACGGTTCCGAAAGTAATTATCGGTACTTGGAAGATGAATTCGGTCAGCATACCGTT
TTAATTCCATACGGCACAATGCTTAAAGAGAATAGTCGAAAATGGCAAAGTGATGACCGTAAGGTTATGAACTGGGACTATCATGAAAAAGATGATTATT
TTATCAATCCACAAAACGTCCGGTTTAATTTTAATGCTTATCGTCAACGGACTGATAAGTATGGTTTTACCCGTGACTTTAAAGAATACATTGCCGAAAA
GTATGATGAAAATCATCAACTAATTTCCGCGGCACTAACACCAAAAGGATATCTTAAAAGGATTTCCGTGAACGAAAATTGGGAATATTTCAAATCGAAA
CAACGAGAATTACTTTCAGCTCCAGAAACTGGTCAGATCTACGCTCAACGTAAGATCGATGTTGAACCAGTTTTTGGCAAGATGAAGGCTTCTTTACATT
TCAATCGATTCTCGGTGCGAGGTTTCGACAAGGTCACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAA
CTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGGTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1646 bp550 aa1511796+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MQDYYNMNQTTLSIALDYQPEEHHSARYINQLVESLKLKYDYQFGRPREYNLGAMLKLVLLAYSYGIFSSRKIERFARENKPAGWLIADQIPSYRTICRF
RISDELATLTTDSLSQLTQYLRQNGMIDDVSFIDGTKILADANKYSFVWKKNTIRFDKMNREKLVDLLGELHEAKIVGEIPAGSELTPELLDIMISKVED
HLVVLNETVEATKQVSPNPAKQQRRTVKSQKRKLDKRRDKMREHQAQQAIYDQRNSYSKTDHDATFMRVKEDPMQNGQLKPAYNVQIATSNQFITGYRLF
QNPTDTRTLQPFIEHLKANNVLGHTIVADAGYGSESNYRYLEDEFGQHTVLIPYGTMLKENSRKWQSDDRKVMNWDYHEKDDYFINPQNVRFNFNAYRQR
TDKYGFTRDFKEYIAEKYDENHQLISAALTPKGYLKRISVNENWEYFKSKQRELLSAPETGQIYAQRKIDVEPVFGKMKASLHFNRFSVRGFDKVTKEAG
IVILALNIMKLVTVGTNFKNQRRKQMGRETKIRFLVPFAYTEASYVTASF

 

Blast result :
Comments
ISP2 is 61% aa similar to ISSau3.
The STOP codon is done by the insertion site.
References
1] ISfinder submission (2010)
2] Kleerebezem,M., Boekhorst,J., van Kranenburg,R., Molenaar,D., Kuipers,O.P., Leer,R., Tarchini,R., Peters,S.A., Sandbrink,H.M., Fiers,M.W., Stiekema,W., Lankhorst,R.M., Bron,P.A., Hoffer,S.M., Groot,M.N., Kerkhoven,R., de Vries,M., Ursing,B., de Vos,W.M. and Siezen,R.J. (2003) Proc. Natl. Acad. Sci. U.S.A. 100 (4), 1990-1995
3] Siezen,R.J., Francke,C., Renckens,B., Boekhorst,J., Wels,M., Kleerebezem,M. and van Hijum,S.A. (2012) J. Bacteriol. 194 (1), 195-196