ISP2
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_004567 | ND | Lactobacillus plantarum | Lactobacillus plantarum WCFS1 |
DNA section
IS Length : 1796 bp
Ends
IR Length : 15
IRL : GAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTC
IRR : GAGGCTGTGACATAACTAGCCTCTGTATAAGCAAATGGGACGAGAAACCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGGGAATATTACCCAAAAAC | GTTTTAATTTAGTGTTTATT | 0 |
DNA sequence
GAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGCTTTTGATATAATAGAAAATAAAAAAAGAGCAT
CGGTCGCACCCGATACTCTACGAAATTATCCTCGAAAGGACATTCCTAATATGCAAGATTATTATAACATGAATCAAACCACTTTGAGTATTGCCTTGGA
TTACCAACCAGAAGAGCATCATTCTGCTCGTTACATCAACCAGCTTGTTGAGAGTTTAAAACTAAAATATGATTACCAGTTTGGCCGTCCGCGGGAATAT
AACCTCGGTGCCATGTTAAAACTGGTCCTTTTAGCGTACAGCTATGGCATTTTCAGCAGTCGTAAAATTGAACGGTTTGCCCGTGAAAACAAGCCAGCTG
GGTGGTTAATTGCCGACCAAATTCCGTCCTACCGGACGATTTGTCGCTTTAGAATTTCTGATGAACTGGCCACTTTGACAACCGATAGCTTATCACAACT
AACTCAATATCTTCGTCAAAATGGCATGATTGATGATGTTTCATTTATTGATGGAACTAAGATCCTAGCCGACGCCAACAAGTATAGCTTTGTTTGGAAG
AAGAATACGATACGATTTGACAAGATGAATCGCGAAAAACTCGTTGACCTGTTAGGCGAGCTTCATGAAGCTAAAATTGTCGGTGAAATTCCGGCAGGAT
CAGAGCTGACTCCCGAACTATTGGATATCATGATTAGCAAGGTTGAGGATCACTTAGTGGTCCTTAATGAAACCGTGGAAGCAACTAAGCAGGTTTCCCC
GAACCCAGCCAAACAGCAACGCCGGACTGTTAAATCACAAAAACGTAAGTTGGATAAACGACGTGATAAAATGCGTGAACACCAAGCACAGCAAGCTATT
TATGATCAACGTAACAGCTACTCTAAGACGGATCACGATGCCACCTTTATGCGGGTCAAGGAAGATCCGATGCAAAACGGTCAATTAAAACCTGCCTACA
ACGTTCAAATCGCCACGAGTAATCAGTTCATTACGGGATATCGGCTTTTCCAAAATCCAACCGACACACGAACCTTACAACCGTTTATTGAACATTTAAA
GGCCAACAATGTGTTAGGTCACACCATCGTTGCCGATGCCGGATACGGTTCCGAAAGTAATTATCGGTACTTGGAAGATGAATTCGGTCAGCATACCGTT
TTAATTCCATACGGCACAATGCTTAAAGAGAATAGTCGAAAATGGCAAAGTGATGACCGTAAGGTTATGAACTGGGACTATCATGAAAAAGATGATTATT
TTATCAATCCACAAAACGTCCGGTTTAATTTTAATGCTTATCGTCAACGGACTGATAAGTATGGTTTTACCCGTGACTTTAAAGAATACATTGCCGAAAA
GTATGATGAAAATCATCAACTAATTTCCGCGGCACTAACACCAAAAGGATATCTTAAAAGGATTTCCGTGAACGAAAATTGGGAATATTTCAAATCGAAA
CAACGAGAATTACTTTCAGCTCCAGAAACTGGTCAGATCTACGCTCAACGTAAGATCGATGTTGAACCAGTTTTTGGCAAGATGAAGGCTTCTTTACATT
TCAATCGATTCTCGGTGCGAGGTTTCGACAAGGTCACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAA
CTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGGTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTC
CGGTCGCACCCGATACTCTACGAAATTATCCTCGAAAGGACATTCCTAATATGCAAGATTATTATAACATGAATCAAACCACTTTGAGTATTGCCTTGGA
TTACCAACCAGAAGAGCATCATTCTGCTCGTTACATCAACCAGCTTGTTGAGAGTTTAAAACTAAAATATGATTACCAGTTTGGCCGTCCGCGGGAATAT
AACCTCGGTGCCATGTTAAAACTGGTCCTTTTAGCGTACAGCTATGGCATTTTCAGCAGTCGTAAAATTGAACGGTTTGCCCGTGAAAACAAGCCAGCTG
GGTGGTTAATTGCCGACCAAATTCCGTCCTACCGGACGATTTGTCGCTTTAGAATTTCTGATGAACTGGCCACTTTGACAACCGATAGCTTATCACAACT
AACTCAATATCTTCGTCAAAATGGCATGATTGATGATGTTTCATTTATTGATGGAACTAAGATCCTAGCCGACGCCAACAAGTATAGCTTTGTTTGGAAG
AAGAATACGATACGATTTGACAAGATGAATCGCGAAAAACTCGTTGACCTGTTAGGCGAGCTTCATGAAGCTAAAATTGTCGGTGAAATTCCGGCAGGAT
CAGAGCTGACTCCCGAACTATTGGATATCATGATTAGCAAGGTTGAGGATCACTTAGTGGTCCTTAATGAAACCGTGGAAGCAACTAAGCAGGTTTCCCC
GAACCCAGCCAAACAGCAACGCCGGACTGTTAAATCACAAAAACGTAAGTTGGATAAACGACGTGATAAAATGCGTGAACACCAAGCACAGCAAGCTATT
TATGATCAACGTAACAGCTACTCTAAGACGGATCACGATGCCACCTTTATGCGGGTCAAGGAAGATCCGATGCAAAACGGTCAATTAAAACCTGCCTACA
ACGTTCAAATCGCCACGAGTAATCAGTTCATTACGGGATATCGGCTTTTCCAAAATCCAACCGACACACGAACCTTACAACCGTTTATTGAACATTTAAA
GGCCAACAATGTGTTAGGTCACACCATCGTTGCCGATGCCGGATACGGTTCCGAAAGTAATTATCGGTACTTGGAAGATGAATTCGGTCAGCATACCGTT
TTAATTCCATACGGCACAATGCTTAAAGAGAATAGTCGAAAATGGCAAAGTGATGACCGTAAGGTTATGAACTGGGACTATCATGAAAAAGATGATTATT
TTATCAATCCACAAAACGTCCGGTTTAATTTTAATGCTTATCGTCAACGGACTGATAAGTATGGTTTTACCCGTGACTTTAAAGAATACATTGCCGAAAA
GTATGATGAAAATCATCAACTAATTTCCGCGGCACTAACACCAAAAGGATATCTTAAAAGGATTTCCGTGAACGAAAATTGGGAATATTTCAAATCGAAA
CAACGAGAATTACTTTCAGCTCCAGAAACTGGTCAGATCTACGCTCAACGTAAGATCGATGTTGAACCAGTTTTTGGCAAGATGAAGGCTTCTTTACATT
TCAATCGATTCTCGGTGCGAGGTTTCGACAAGGTCACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAA
CTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGGTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1646 bp | 550 aa | 151 | 1796 | + | No |
Chemistry : DDE
ORF sequence :
MQDYYNMNQTTLSIALDYQPEEHHSARYINQLVESLKLKYDYQFGRPREYNLGAMLKLVLLAYSYGIFSSRKIERFARENKPAGWLIADQIPSYRTICRF
RISDELATLTTDSLSQLTQYLRQNGMIDDVSFIDGTKILADANKYSFVWKKNTIRFDKMNREKLVDLLGELHEAKIVGEIPAGSELTPELLDIMISKVED
HLVVLNETVEATKQVSPNPAKQQRRTVKSQKRKLDKRRDKMREHQAQQAIYDQRNSYSKTDHDATFMRVKEDPMQNGQLKPAYNVQIATSNQFITGYRLF
QNPTDTRTLQPFIEHLKANNVLGHTIVADAGYGSESNYRYLEDEFGQHTVLIPYGTMLKENSRKWQSDDRKVMNWDYHEKDDYFINPQNVRFNFNAYRQR
TDKYGFTRDFKEYIAEKYDENHQLISAALTPKGYLKRISVNENWEYFKSKQRELLSAPETGQIYAQRKIDVEPVFGKMKASLHFNRFSVRGFDKVTKEAG
IVILALNIMKLVTVGTNFKNQRRKQMGRETKIRFLVPFAYTEASYVTASF
RISDELATLTTDSLSQLTQYLRQNGMIDDVSFIDGTKILADANKYSFVWKKNTIRFDKMNREKLVDLLGELHEAKIVGEIPAGSELTPELLDIMISKVED
HLVVLNETVEATKQVSPNPAKQQRRTVKSQKRKLDKRRDKMREHQAQQAIYDQRNSYSKTDHDATFMRVKEDPMQNGQLKPAYNVQIATSNQFITGYRLF
QNPTDTRTLQPFIEHLKANNVLGHTIVADAGYGSESNYRYLEDEFGQHTVLIPYGTMLKENSRKWQSDDRKVMNWDYHEKDDYFINPQNVRFNFNAYRQR
TDKYGFTRDFKEYIAEKYDENHQLISAALTPKGYLKRISVNENWEYFKSKQRELLSAPETGQIYAQRKIDVEPVFGKMKASLHFNRFSVRGFDKVTKEAG
IVILALNIMKLVTVGTNFKNQRRKQMGRETKIRFLVPFAYTEASYVTASF
Blast result :
Comments
ISP2 is 61% aa similar to ISSau3.
The STOP codon is done by the insertion site.
The STOP codon is done by the insertion site.
References
1] ISfinder submission (2010)
2] Kleerebezem,M., Boekhorst,J., van Kranenburg,R., Molenaar,D., Kuipers,O.P., Leer,R., Tarchini,R., Peters,S.A., Sandbrink,H.M., Fiers,M.W., Stiekema,W., Lankhorst,R.M., Bron,P.A., Hoffer,S.M., Groot,M.N., Kerkhoven,R., de Vries,M., Ursing,B., de Vos,W.M. and Siezen,R.J. (2003) Proc. Natl. Acad. Sci. U.S.A. 100 (4), 1990-1995
3] Siezen,R.J., Francke,C., Renckens,B., Boekhorst,J., Wels,M., Kleerebezem,M. and van Hijum,S.A. (2012) J. Bacteriol. 194 (1), 195-196
2] Kleerebezem,M., Boekhorst,J., van Kranenburg,R., Molenaar,D., Kuipers,O.P., Leer,R., Tarchini,R., Peters,S.A., Sandbrink,H.M., Fiers,M.W., Stiekema,W., Lankhorst,R.M., Bron,P.A., Hoffer,S.M., Groot,M.N., Kerkhoven,R., de Vries,M., Ursing,B., de Vos,W.M. and Siezen,R.J. (2003) Proc. Natl. Acad. Sci. U.S.A. 100 (4), 1990-1995
3] Siezen,R.J., Francke,C., Renckens,B., Boekhorst,J., Wels,M., Kleerebezem,M. and van Hijum,S.A. (2012) J. Bacteriol. 194 (1), 195-196