ISHde2
- Family IS5
- Group IS427
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001277 | ND | Candidatus Hamiltonella | Candidatus Hamiltonella defensa 5AT Acyrthosiphon pisum 5AT |
DNA section
IS Length : 852 bp
Ends
IR Length : 19/21
IRL : GGCACTGTTAACAAAGTTAATGTTAAGATATTCTCTGTTTTTTAGGGGGA
IRR : GGCAGTGTTAACAAAGTAAATTAAAGACCTTAAGACAAGCGATAGCGAAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACTTCTTGCAT | AT | GTCCCAATCGAAT | 2 |
DNA sequence
GGCACTGTTAACAAAGTTAATGTTAAGATATTCTCTGTTTTTTAGGGGGATAAAGAAATGAAAAACAGGCACTATCCGCTCAAAGAGTGTGATTTTATAA
AAATAATCGAACCTCATATTATAAAATATGATAAACGTCCAGGTAGACCTGCAAGCATCAGTCATTATCAGTTTTTTTCAGCTGTTTTGTACGTATTGAG
AACGGGTATCCCTTGGCGTGATGTACCTGATTTATACGGTCATTGGCATACGATTTATATGCGCTTTAAAAGATGGAGTGAAAATGGCTTGTTCTGGAAC
TTGCTTTATCGTTTACAACAAAAAAAGAAAATCAAAATGGACTGTACATGGGTAGACAGTACGACGGTCGCCATCCACCGACACGGCTCAGGAAGCCTTA
AAAAAAGGGACCTCAATCGATAGGGCGCGGCCGAAAAGGCGTGAGCACTCAAATTCACGTGGGTCTTTCAGGCCGCTTTCTCCGGAGTGCCTGTCTATCT
GAAGGACAGCGCTCCGATATGAAAGCCTTTACTGAGCTGTGGATAAAGGGAAATGGGAGGAAGGTGAGCTACATCATCGCTGATAAGGGAGTTGACTTTT
TTGATGTCAGAAAATTAATCCGGGATAGTGGAAAGAGCCCTGTGATACCCCGACGAAAAGGGGCTGTTTGCACCGGCATTCAACCTAATGATAAAGAAAA
ATACAAAACACGCTCTGCGATTGAACGTTTCTTCTTCAGCATAAAAGAACAAAAAAGACTCGCTTTACGCTTTGATAAACTCGATATCACCTTCTTTTCT
TTCTTCGCTATCGCTTGTCTTAAGGTCTTTAATTTACTTTGTTAACACTGCC
AAATAATCGAACCTCATATTATAAAATATGATAAACGTCCAGGTAGACCTGCAAGCATCAGTCATTATCAGTTTTTTTCAGCTGTTTTGTACGTATTGAG
AACGGGTATCCCTTGGCGTGATGTACCTGATTTATACGGTCATTGGCATACGATTTATATGCGCTTTAAAAGATGGAGTGAAAATGGCTTGTTCTGGAAC
TTGCTTTATCGTTTACAACAAAAAAAGAAAATCAAAATGGACTGTACATGGGTAGACAGTACGACGGTCGCCATCCACCGACACGGCTCAGGAAGCCTTA
AAAAAAGGGACCTCAATCGATAGGGCGCGGCCGAAAAGGCGTGAGCACTCAAATTCACGTGGGTCTTTCAGGCCGCTTTCTCCGGAGTGCCTGTCTATCT
GAAGGACAGCGCTCCGATATGAAAGCCTTTACTGAGCTGTGGATAAAGGGAAATGGGAGGAAGGTGAGCTACATCATCGCTGATAAGGGAGTTGACTTTT
TTGATGTCAGAAAATTAATCCGGGATAGTGGAAAGAGCCCTGTGATACCCCGACGAAAAGGGGCTGTTTGCACCGGCATTCAACCTAATGATAAAGAAAA
ATACAAAACACGCTCTGCGATTGAACGTTTCTTCTTCAGCATAAAAGAACAAAAAAGACTCGCTTTACGCTTTGATAAACTCGATATCACCTTCTTTTCT
TTCTTCGCTATCGCTTGTCTTAAGGTCTTTAATTTACTTTGTTAACACTGCC
Recoding section
- Recoding by frameshift
- Frame -1
- Type translational
- Experimentally demonstrated No
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
366 bp | 121 aa | 58 | 423 | + | No |
Description : First part of the transposase
ORF sequence :
MKNRHYPLKECDFIKIIEPHIIKYDKRPGRPASISHYQFFSAVLYVLRTGIPWRDVPDLYGHWHTIYMRFKRWSENGLFWNLLYRLQQKKKIKMDCTWVD
STTVAIHRHGSGSLKKRDLNR
STTVAIHRHGSGSLKKRDLNR
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
444 bp | 145 aa | 402 | 845 | + | No |
Description : Second part of the transposase
ORF sequence :
KKGPQSIGRGRKGVSTQIHVGLSGRLRSACLSEGQRSDMKAFTELWIKGNGRKVSYIIADKGVDFDVRKLIRDSGKSPVIPRRKGAVCTGIQPNDKEKYK
TRSAIERFFFSIKEQKRLALRFDKLDITFFSFFAIACLKVFNLLC
TRSAIERFFFSIKEQKRLALRFDKLDITFFSFFAIACLKVFNLLC
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
788 bp | 259 aa | 58 | 845 | + | No |
Chemistry : DDE
ORF sequence :
MKNRHYPLKECDFIKIIEPHIIKYDKRPGRPASISHYQFFSAVLYVLRTGIPWRDVPDLYGHWHTIYMRFKRWSENGLFWNLLYRLQQKKKIKMDCTWVD
STTVAIHRHGSGSLKKGPQSIGRGRKGVSTQIHVGLSGRLRSACLSEGQRSDMKAFTELWIKGNGRKVSYIIADKGVDFDVRKLIRDSGKSPVIPRRKGA
VCTGIQPNDKEKYKTRSAIERFFFSIKEQKRLALRFDKLDITFFSFFAIACLKVFNLLC
STTVAIHRHGSGSLKKGPQSIGRGRKGVSTQIHVGLSGRLRSACLSEGQRSDMKAFTELWIKGNGRKVSYIIADKGVDFDVRKLIRDSGKSPVIPRRKGA
VCTGIQPNDKEKYKTRSAIERFFFSIKEQKRLALRFDKLDITFFSFFAIACLKVFNLLC
Blast result :
Comments
ISHde2 is 54% aa similar to ISPpa6.
The third ORF is the putative ORFAB transposase reconstrcuted in silico by possible -1 frameshift.
The third ORF is the putative ORFAB transposase reconstrcuted in silico by possible -1 frameshift.
References
1] ISfinder submission (2018)
2] Degnan,P.H., Yu,Y., Sisneros,N., Wing,R.A. and Moran,N.A. (2009) Proc. Natl. Acad. Sci. U.S.A. 106 (22), 9063-9068
2] Degnan,P.H., Yu,Y., Sisneros,N., Wing,R.A. and Moran,N.A. (2009) Proc. Natl. Acad. Sci. U.S.A. 106 (22), 9063-9068