ISPye13
- Family IS3
- Group IS3
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP020442 | ND | Paracoccus yeei | Paracoccus yeei Paracoccus yeei FDAARGOS_252 |
DNA section
IS Length : 1231 bp
Ends
IR Length : 27/27
IRL : TGGACCTGTCGCGGTTTCGTTCCGGTCTTCTGAGAGCGATGCTCTCACCA
IRR : TGGACCTGTCGCGGTTTCGTTCCGGTCAGGTGCTCATGTTAAGCGGCCCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
tcatgcctta | CTC | ttactccggg | 3 |
DNA sequence
TGGACCTGTCGCGGTTTCGTTCCGGTCTTCTGAGAGCGATGCTCTCACCAAAGGAGACAGGATATGGCAGCGACACATAGCGCGGAATTCAAGCGGGATG
CGGTTCGCATCGCGCTCGCCAGCGGCCTGACACGGCGTCAGGTTGCGTCTGATCTTGGGATCGGGCTTTCGACGCTCGGCAAATGGATTAGGGCGATTTC
GGATGAGACGAAGGTCCCGGAACGGGATTCCGATCTGCTGCGCGAGAATGAACGGCTGCGCAAAGAGAACCGCATATTGAGGGAGGAGAGGGAGGTTCTA
AAAAAGGCAGCTCAGTTCTTCGCGGCTCAAAAGACGTGAGATTTCAGTTCATTGCCAACCACCGCGGCGACCTGCCTCGCAGTCGCCTGTGCCAGTTGAT
GGGCGTGACGGATCGCGGATTTCGGGCCTGGCGGCGCAGGCCCCCGTCCATCCGTCAGCGGCGCGATATGGTGATCCTGGCCCATATCCGTGAACAGCAT
CGGTTGAGCCTGGGCAGCTATGGCAGGCCGTGTATGACCGAGGAGCTGAACGAATTGGGCCTGCGGGTCGGACAGCGCCGGGTAGGCCGTCTGATGCGCC
AGAATGGCATTCGCATCATCCGCAGCCGGAAGTTCAAGCGCACCACCGACAGCGATCACGCCTTCAACATCGCGCCGAACCTCTTGCAACAGGACTTTTC
GGCGAGTGCCCCGAACCAGAAGTGGGCGGGCGACATCACCTACATCTGGACGCGTGAGGGCTGGGTTTATCTGGCCGTCATCATCGACCTGTTCTCGAGG
CGCGTGATCGGGTGGGCCATCAGCAACCGGATGAAGCAGGATCTGGCGATCAGGGCGCTGAACATGGCCGTTGCCCTGCGCCGCCCGCCACCCGGCTGTA
TTCACCATACGGATCGCGGCGCGCAATACTGCGCCCATGACTACCAGAAGCTTCTGCGCAAAAACGGGTTCAAAGTATCAATGAGCGGCAAGGGCAATTG
CTATGATAATTCGGCCGTCGAAAGCTTCTTCAAGTCGCTGAAGGCAGAATTGGTCTGGAGGCGCGACTGGCCCACCCGGCGTGATGTCGAGATTGCCCTC
TTCGAATACATCAACGGCTTCTATAACCCACGCCGCAAACACTCAGCCTTGGGCTGGAAATCACCCGTGGCCTTCGAACAGAGGGCCGCTTAACATGAGC
ACCTGACCGGAACGAAACCGCGACAGGTCCA
CGGTTCGCATCGCGCTCGCCAGCGGCCTGACACGGCGTCAGGTTGCGTCTGATCTTGGGATCGGGCTTTCGACGCTCGGCAAATGGATTAGGGCGATTTC
GGATGAGACGAAGGTCCCGGAACGGGATTCCGATCTGCTGCGCGAGAATGAACGGCTGCGCAAAGAGAACCGCATATTGAGGGAGGAGAGGGAGGTTCTA
AAAAAGGCAGCTCAGTTCTTCGCGGCTCAAAAGACGTGAGATTTCAGTTCATTGCCAACCACCGCGGCGACCTGCCTCGCAGTCGCCTGTGCCAGTTGAT
GGGCGTGACGGATCGCGGATTTCGGGCCTGGCGGCGCAGGCCCCCGTCCATCCGTCAGCGGCGCGATATGGTGATCCTGGCCCATATCCGTGAACAGCAT
CGGTTGAGCCTGGGCAGCTATGGCAGGCCGTGTATGACCGAGGAGCTGAACGAATTGGGCCTGCGGGTCGGACAGCGCCGGGTAGGCCGTCTGATGCGCC
AGAATGGCATTCGCATCATCCGCAGCCGGAAGTTCAAGCGCACCACCGACAGCGATCACGCCTTCAACATCGCGCCGAACCTCTTGCAACAGGACTTTTC
GGCGAGTGCCCCGAACCAGAAGTGGGCGGGCGACATCACCTACATCTGGACGCGTGAGGGCTGGGTTTATCTGGCCGTCATCATCGACCTGTTCTCGAGG
CGCGTGATCGGGTGGGCCATCAGCAACCGGATGAAGCAGGATCTGGCGATCAGGGCGCTGAACATGGCCGTTGCCCTGCGCCGCCCGCCACCCGGCTGTA
TTCACCATACGGATCGCGGCGCGCAATACTGCGCCCATGACTACCAGAAGCTTCTGCGCAAAAACGGGTTCAAAGTATCAATGAGCGGCAAGGGCAATTG
CTATGATAATTCGGCCGTCGAAAGCTTCTTCAAGTCGCTGAAGGCAGAATTGGTCTGGAGGCGCGACTGGCCCACCCGGCGTGATGTCGAGATTGCCCTC
TTCGAATACATCAACGGCTTCTATAACCCACGCCGCAAACACTCAGCCTTGGGCTGGAAATCACCCGTGGCCTTCGAACAGAGGGCCGCTTAACATGAGC
ACCTGACCGGAACGAAACCGCGACAGGTCCA
Recoding section
- Recoding by frameshift
- Frame -1
- Type translational
- Experimentally demonstrated No
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
276 bp | 91 aa | 64 | 339 | + | No |
Description : First part of the transposase
ORF sequence :
MAATHSAEFKRDAVRIALASGLTRRQVASDLGIGLSTLGKWIRAISDETKVPERDSDLLRENERLRKENRILREEREVLKKAAQFFAAQKT
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
942 bp | 313 aa | 252 | 1193 | + | No |
Description : Second part of the transposase
ORF sequence :
TAAQREPHIEGGEGGSKKGSSVLRGSKDVRFQFIANHRGDLPRSRLCQLMGVTDRGFRAWRRRPPSIRQRRDMVILAHIREQHRLSLGSYGRPCMTEELN
ELGLRVGQRRVGRLMRQNGIRIIRSRKFKRTTDSDHAFNIAPNLLQQDFSASAPNQKWAGDITYIWTREGWVYLAVIIDLFSRRVIGWAISNRMKQDLAI
RALNMAVALRRPPPGCIHHTDRGAQYCAHDYQKLLRKNGFKVSMSGKGNCYDNSAVESFFKSLKAELVWRRDWPTRRDVEIALFEYINGFYNPRRKHSAL
GWKSPVAFEQRAA
ELGLRVGQRRVGRLMRQNGIRIIRSRKFKRTTDSDHAFNIAPNLLQQDFSASAPNQKWAGDITYIWTREGWVYLAVIIDLFSRRVIGWAISNRMKQDLAI
RALNMAVALRRPPPGCIHHTDRGAQYCAHDYQKLLRKNGFKVSMSGKGNCYDNSAVESFFKSLKAELVWRRDWPTRRDVEIALFEYINGFYNPRRKHSAL
GWKSPVAFEQRAA
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1130 bp | 376 aa | 64 | 1193 | + | Yes |
Chemistry : DDE
ORF sequence :
MAATHSAEFKRDAVRIALASGLTRRQVASDLGIGLSTLGKWIRAISDETKVPERDSDLLRENERLRKENRILREEREVLKKGSSVLRGSKDVRFQFIANH
RGDLPRSRLCQLMGVTDRGFRAWRRRPPSIRQRRDMVILAHIREQHRLSLGSYGRPCMTEELNELGLRVGQRRVGRLMRQNGIRIIRSRKFKRTTDSDHA
FNIAPNLLQQDFSASAPNQKWAGDITYIWTREGWVYLAVIIDLFSRRVIGWAISNRMKQDLAIRALNMAVALRRPPPGCIHHTDRGAQYCAHDYQKLLRK
NGFKVSMSGKGNCYDNSAVESFFKSLKAELVWRRDWPTRRDVEIALFEYINGFYNPRRKHSALGWKSPVAFEQRAA
RGDLPRSRLCQLMGVTDRGFRAWRRRPPSIRQRRDMVILAHIREQHRLSLGSYGRPCMTEELNELGLRVGQRRVGRLMRQNGIRIIRSRKFKRTTDSDHA
FNIAPNLLQQDFSASAPNQKWAGDITYIWTREGWVYLAVIIDLFSRRVIGWAISNRMKQDLAIRALNMAVALRRPPPGCIHHTDRGAQYCAHDYQKLLRK
NGFKVSMSGKGNCYDNSAVESFFKSLKAELVWRRDWPTRRDVEIALFEYINGFYNPRRKHSALGWKSPVAFEQRAA
Blast result :
Comments
ISPye13 is 91% aa similar to IS1133.
ISPye13 was identified by in silico nucleotide sequence analysis of Paracoccus yeei strain FDAARGOS_252. The third ORF is the putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
ISPye13 was identified by in silico nucleotide sequence analysis of Paracoccus yeei strain FDAARGOS_252. The third ORF is the putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
References
1] Chmielowska C., Szuplewska M., Bartosik D. (2018) Direct submission.
2] Goldberg,B., Campos,J., Tallon,L., Sadzewicz,L., Sengamalay,N., Ott,S., Godinez,A., Nagaraj,S., Vavikolanu,K., Aluvathingal,J., Nadendla,S. and Sichtig,H. (2017) Direct GenBank submission.
2] Goldberg,B., Campos,J., Tallon,L., Sadzewicz,L., Sengamalay,N., Ott,S., Godinez,A., Nagaraj,S., Vavikolanu,K., Aluvathingal,J., Nadendla,S. and Sichtig,H. (2017) Direct GenBank submission.