ISPye12

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP020442 ND Paracoccus yeei
Paracoccus yeei
Paracoccus yeei FDAARGOS_252
DNA section
IS Length : 1050 bp

Ends


IR Length : 23/27

IRL : GGCTCTGTTGCACAAATCCTGAGAGGGATTCATCTTGTGGATCCAGCGTG
IRR : GGCTCTGTTGCACAAATCGGTTGAGGGCCGGACGCCCCCTTTCCCCGGAC

Insertion site


Left flankDirect repeatRight flankDR Length
ggctcgagatgcttgagata0
gaagattgttCTGCTGCGGttgcatggcc9
atgcgttgaaCGATAAAGAtagccatttg9

DNA sequence

GGCTCTGTTGCACAAATCCTGAGAGGGATTCATCTTGTGGATCCAGCGTGGTAGCTGGACGGCATGAGCAAACCTACACCGCCAACCTACAAGACCAGGA
ACTGGCCCGCGTACAATAGAGCGCTTAAGCGTCGGGGTTCGCTGACGATATGGTTTGACCCCGCCATGACTTGGGAAGCCGAGCCCACCGGCAAGCGTGG
CCGCCAGCACGACTATAGCGATGCCGCCATCCAAACCTGCCTGACGATGAAGGTTTTGTTCGGCCTGGCGCTAAGACAGACCACTGGGTTCGTCGAGAGC
CTGCTACGGCTGATCGGTCTGGACTGGGCGGTGCCGGACTTCAGCACGCTTAGCCGTCGCCAGAAAACCCTGAAGGTCAGCATTCCCTATCGTGGGTCGG
ATGGGCCGCTGCACCTGCTGGTCGACAGCACTGGCATCAAGGTTGAAGGCGAAGGCGAGTGGAACGCCCGCAAGCATGGCGGCGCTAAACGCAGGGTCTG
GCGCAAGATCCACATCGGAATTGACGAGAAATCCTTGGAAGTCCGGGCAGCTGGATTCACCACGAGTGGGATCGGTGATGCGCCCATACTACCTGAGCTG
CTGGACCAGATCCCGCCCGATCAGGAGATCGCCACCGTCACCGCCGACGGTGCCTTCGACACGCGCAAGTGTCATGATGCCATCGCTGCCCGGGGCGCCG
CCGCAATCATTCCGCCCCGAAAGAACGCCAAGCCCTGGAAGCCCGACACCGCCGGGGCCATCGCTCGGAACGAAATCCTGCGCACATCGAAGCGCGTCGG
TCGGACCATCTGGCGACGATGGAGCGGCTATCACCGCCGAAGCCGGGCCGAGACCAAGATGCACTGCGTCAAGTTGCTGGGCCAACGCCTGTCCGCGCGG
GACTTCGACCGTCAGGTGGCCGAGTTCCAAGTCAGGGTCGCGGTCCTGAACAGCTTCACCGCGCTCGGAACCCCCATCACAGAGCTCGCAGGATAGGTCT
GTCCGGGGAAAGGGGGCGTCCGGCCCTCAACCGATTTGTGCAACAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
933 bp310 aa64996+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSKPTPPTYKTRNWPAYNRALKRRGSLTIWFDPAMTWEAEPTGKRGRQHDYSDAAIQTCLTMKVLFGLALRQTTGFVESLLRLIGLDWAVPDFSTLSRRQ
KTLKVSIPYRGSDGPLHLLVDSTGIKVEGEGEWNARKHGGAKRRVWRKIHIGIDEKSLEVRAAGFTTSGIGDAPILPELLDQIPPDQEIATVTADGAFDT
RKCHDAIAARGAAAIIPPRKNAKPWKPDTAGAIARNEILRTSKRVGRTIWRRWSGYHRRSRAETKMHCVKLLGQRLSARDFDRQVAEFQVRVAVLNSFTA
LGTPITELAG

 

Blast result :
Comments
ISPye12 is 916 aa similar to ISSpo9.
ISPye12 was identified by in silico nucleotide sequence analysis of Paracoccus yeei FDAARGOS_252 (there are 3 copies of ISPye12 present in the genome).
References
1] Chmielowska C., Szuplewska M., Bartosik D. (2018) Direct submission.
2] Goldberg,B., Campos,J., Tallon,L., Sadzewicz,L., Sengamalay,N., Ott,S., Godinez,A., Nagaraj,S., Vavikolanu,K., Aluvathingal,J., Nadendla,S. and Sichtig,H. (2017) Direct GenBank submission.