ISPye12
- Family IS5
- Group IS903
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP020442 | ND | Paracoccus yeei | Paracoccus yeei Paracoccus yeei FDAARGOS_252 |
DNA section
IS Length : 1050 bp
Ends
IR Length : 23/27
IRL : GGCTCTGTTGCACAAATCCTGAGAGGGATTCATCTTGTGGATCCAGCGTG
IRR : GGCTCTGTTGCACAAATCGGTTGAGGGCCGGACGCCCCCTTTCCCCGGAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ggctcgagat | gcttgagata | 0 | |
gaagattgtt | CTGCTGCGG | ttgcatggcc | 9 |
atgcgttgaa | CGATAAAGA | tagccatttg | 9 |
DNA sequence
GGCTCTGTTGCACAAATCCTGAGAGGGATTCATCTTGTGGATCCAGCGTGGTAGCTGGACGGCATGAGCAAACCTACACCGCCAACCTACAAGACCAGGA
ACTGGCCCGCGTACAATAGAGCGCTTAAGCGTCGGGGTTCGCTGACGATATGGTTTGACCCCGCCATGACTTGGGAAGCCGAGCCCACCGGCAAGCGTGG
CCGCCAGCACGACTATAGCGATGCCGCCATCCAAACCTGCCTGACGATGAAGGTTTTGTTCGGCCTGGCGCTAAGACAGACCACTGGGTTCGTCGAGAGC
CTGCTACGGCTGATCGGTCTGGACTGGGCGGTGCCGGACTTCAGCACGCTTAGCCGTCGCCAGAAAACCCTGAAGGTCAGCATTCCCTATCGTGGGTCGG
ATGGGCCGCTGCACCTGCTGGTCGACAGCACTGGCATCAAGGTTGAAGGCGAAGGCGAGTGGAACGCCCGCAAGCATGGCGGCGCTAAACGCAGGGTCTG
GCGCAAGATCCACATCGGAATTGACGAGAAATCCTTGGAAGTCCGGGCAGCTGGATTCACCACGAGTGGGATCGGTGATGCGCCCATACTACCTGAGCTG
CTGGACCAGATCCCGCCCGATCAGGAGATCGCCACCGTCACCGCCGACGGTGCCTTCGACACGCGCAAGTGTCATGATGCCATCGCTGCCCGGGGCGCCG
CCGCAATCATTCCGCCCCGAAAGAACGCCAAGCCCTGGAAGCCCGACACCGCCGGGGCCATCGCTCGGAACGAAATCCTGCGCACATCGAAGCGCGTCGG
TCGGACCATCTGGCGACGATGGAGCGGCTATCACCGCCGAAGCCGGGCCGAGACCAAGATGCACTGCGTCAAGTTGCTGGGCCAACGCCTGTCCGCGCGG
GACTTCGACCGTCAGGTGGCCGAGTTCCAAGTCAGGGTCGCGGTCCTGAACAGCTTCACCGCGCTCGGAACCCCCATCACAGAGCTCGCAGGATAGGTCT
GTCCGGGGAAAGGGGGCGTCCGGCCCTCAACCGATTTGTGCAACAGAGCC
ACTGGCCCGCGTACAATAGAGCGCTTAAGCGTCGGGGTTCGCTGACGATATGGTTTGACCCCGCCATGACTTGGGAAGCCGAGCCCACCGGCAAGCGTGG
CCGCCAGCACGACTATAGCGATGCCGCCATCCAAACCTGCCTGACGATGAAGGTTTTGTTCGGCCTGGCGCTAAGACAGACCACTGGGTTCGTCGAGAGC
CTGCTACGGCTGATCGGTCTGGACTGGGCGGTGCCGGACTTCAGCACGCTTAGCCGTCGCCAGAAAACCCTGAAGGTCAGCATTCCCTATCGTGGGTCGG
ATGGGCCGCTGCACCTGCTGGTCGACAGCACTGGCATCAAGGTTGAAGGCGAAGGCGAGTGGAACGCCCGCAAGCATGGCGGCGCTAAACGCAGGGTCTG
GCGCAAGATCCACATCGGAATTGACGAGAAATCCTTGGAAGTCCGGGCAGCTGGATTCACCACGAGTGGGATCGGTGATGCGCCCATACTACCTGAGCTG
CTGGACCAGATCCCGCCCGATCAGGAGATCGCCACCGTCACCGCCGACGGTGCCTTCGACACGCGCAAGTGTCATGATGCCATCGCTGCCCGGGGCGCCG
CCGCAATCATTCCGCCCCGAAAGAACGCCAAGCCCTGGAAGCCCGACACCGCCGGGGCCATCGCTCGGAACGAAATCCTGCGCACATCGAAGCGCGTCGG
TCGGACCATCTGGCGACGATGGAGCGGCTATCACCGCCGAAGCCGGGCCGAGACCAAGATGCACTGCGTCAAGTTGCTGGGCCAACGCCTGTCCGCGCGG
GACTTCGACCGTCAGGTGGCCGAGTTCCAAGTCAGGGTCGCGGTCCTGAACAGCTTCACCGCGCTCGGAACCCCCATCACAGAGCTCGCAGGATAGGTCT
GTCCGGGGAAAGGGGGCGTCCGGCCCTCAACCGATTTGTGCAACAGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
933 bp | 310 aa | 64 | 996 | + | No |
Chemistry : DDE
ORF sequence :
MSKPTPPTYKTRNWPAYNRALKRRGSLTIWFDPAMTWEAEPTGKRGRQHDYSDAAIQTCLTMKVLFGLALRQTTGFVESLLRLIGLDWAVPDFSTLSRRQ
KTLKVSIPYRGSDGPLHLLVDSTGIKVEGEGEWNARKHGGAKRRVWRKIHIGIDEKSLEVRAAGFTTSGIGDAPILPELLDQIPPDQEIATVTADGAFDT
RKCHDAIAARGAAAIIPPRKNAKPWKPDTAGAIARNEILRTSKRVGRTIWRRWSGYHRRSRAETKMHCVKLLGQRLSARDFDRQVAEFQVRVAVLNSFTA
LGTPITELAG
KTLKVSIPYRGSDGPLHLLVDSTGIKVEGEGEWNARKHGGAKRRVWRKIHIGIDEKSLEVRAAGFTTSGIGDAPILPELLDQIPPDQEIATVTADGAFDT
RKCHDAIAARGAAAIIPPRKNAKPWKPDTAGAIARNEILRTSKRVGRTIWRRWSGYHRRSRAETKMHCVKLLGQRLSARDFDRQVAEFQVRVAVLNSFTA
LGTPITELAG
Blast result :
Comments
ISPye12 is 916 aa similar to ISSpo9.
ISPye12 was identified by in silico nucleotide sequence analysis of Paracoccus yeei FDAARGOS_252 (there are 3 copies of ISPye12 present in the genome).
ISPye12 was identified by in silico nucleotide sequence analysis of Paracoccus yeei FDAARGOS_252 (there are 3 copies of ISPye12 present in the genome).
References
1] Chmielowska C., Szuplewska M., Bartosik D. (2018) Direct submission.
2] Goldberg,B., Campos,J., Tallon,L., Sadzewicz,L., Sengamalay,N., Ott,S., Godinez,A., Nagaraj,S., Vavikolanu,K., Aluvathingal,J., Nadendla,S. and Sichtig,H. (2017) Direct GenBank submission.
2] Goldberg,B., Campos,J., Tallon,L., Sadzewicz,L., Sengamalay,N., Ott,S., Godinez,A., Nagaraj,S., Vavikolanu,K., Aluvathingal,J., Nadendla,S. and Sichtig,H. (2017) Direct GenBank submission.