ISPye7
- Family IS5
- Group IS5
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CP020444 | ND | Paracoccus yeei | Paracoccus yeei Paracoccus yeei FDAARGOS_252 Paracoccus yeei CCUG 32053 |
DNA section
IS Length : 1485 bp
Ends
IR Length : 15/17
IRL : GTCCGATCTGAACAACCTCTACCACGTTGATTTTGAGTAGTGAATCTGCG
IRR : GTCGGCTCTGAACAACCGTGTCAGGCGGCCAATGCTTGCCTGTGAAGGGC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| ccggcgatac | TAAATA | caacccaaaa | 6 |
| agattagtta | taattcttca | 0 | |
| cgcgttcggg | TATTTC | gaaaacagtg | 6 |
| accgcaagtg | taggtagtct | 0 | |
| caataaatca | taccaagggt | 0 |
DNA sequence
GTCCGATCTGAACAACCTCTACCACGTTGATTTTGAGTAGTGAATCTGCGGTTTTGTTCGCTTTGATTTGCAGGGTTTTGTATGCTTGGGGCAGAAACCT
TGCAATTTCAGGTCGCCGATGAAGCCCCATTCCCGCGTGCCCGAACAAGATGATCTCCTTCGCCCGAGGCTGGTCGACATGATCGACGCTCGCCATGAGC
TGGTGAAGCTCGCGACGCTGATCGACTGGGATTTCTTCGAGCGGGAATGGGTGAGTTTCTTTCCCTCGCATCAAGGGCGCCCGGCGACGTCGCCGCGACT
GGTCGCGGGGCTGATGTATCTCCAGCATGCCTTCAAGCTCTCTGACGAGGCGGTCGTCGCCCGGTGGATTGAAAATCCCTACTACCAGCACTTCACCGGC
GAGACCTTCTTCCAGCACCGCCCACCGATCGACCCGTCCTCGCTGACTCGCTGGCGCAAGCGGATCGGCGAAGAGGGAGTGGAGTGGCTGCTGACCAAGA
CGATCAAGGCAGCTCGGGCCTCTGGCGCGGTCACCGACAAGAGCCTGAAGCGGATCGCAGTCGATACGACCGTGATGGAGAAAGACATCGCCCATCCGAC
GGATGCCCGGCTTTACGAGCGCGCCCGGGCTCTGATGGTCAGTCTGGCGAAGGAGGCCGGGATCGAGTTGCGCCAGAGCTACGCGCGGCTTGCCCCGCGT
CTCGCCGCCCAGGTCGGGCGTTATGCCCATGCCCGGCAGTTCAAGCGCATGCGCAAGGCCCTGCGCCAGCTCAAGGGCTATGCCGGCAGGATCCGCCGGG
ACCTGCGCCGGCATTTGCAGGACATCCCTGAGGGCGCCCTGCGCGACAAGGTGCTTGAAGCGCTCTGGCTGGTTGGTCGCCTGCTCGCGCAGACCCCGAA
GAGCAAGGACAAGATTTACTCCCTGCACGAGCCCGAGGTCGATTGCATCTCCAAGGGCAAGGCGCGGGTCCGCTACGAATTCGGCACCAAGGTCAGCCTC
GCCACGACCATCGACGAAGGTTTCGTCGTCGGCGCCCGCAGCTTTGCCGGCAACCCCTATGATGGCCACACCCTGGCACCTGCACTGGAGCAGGTCGCGA
TCCTGACCGACCAGGTGCCCGATCTCGCCGTCGTCGACCGCGGCTATCGCGGCCATGGCGTGGGCACCACCAAGATCCTGATCAGCGGCATGCGGCGCGG
CATCACGCCGTTACTGGCCAAGCTCCTGAAACGACGCAGCGCCATCGAACCCGAAATCGGTCACATGAAGACCGACGGACGTCTTGCCAGATGCCCGCTG
AAGGGCCGCATTGGCGACGCGGTCTTCGCCGTTCTCTGTGCCTGTGGCCACAATATCCGCAAGATCCTGGTCCATCTCAGGGTTCTTTGGGCCCTGTTAC
TCCACCTGATTGCGGCAATCATCTGCCGCGAAAGGGCCCTTCACAGGCAAGCATTGGCCGCCTGACACGGTTGTTCAGAGCCGAC
TGCAATTTCAGGTCGCCGATGAAGCCCCATTCCCGCGTGCCCGAACAAGATGATCTCCTTCGCCCGAGGCTGGTCGACATGATCGACGCTCGCCATGAGC
TGGTGAAGCTCGCGACGCTGATCGACTGGGATTTCTTCGAGCGGGAATGGGTGAGTTTCTTTCCCTCGCATCAAGGGCGCCCGGCGACGTCGCCGCGACT
GGTCGCGGGGCTGATGTATCTCCAGCATGCCTTCAAGCTCTCTGACGAGGCGGTCGTCGCCCGGTGGATTGAAAATCCCTACTACCAGCACTTCACCGGC
GAGACCTTCTTCCAGCACCGCCCACCGATCGACCCGTCCTCGCTGACTCGCTGGCGCAAGCGGATCGGCGAAGAGGGAGTGGAGTGGCTGCTGACCAAGA
CGATCAAGGCAGCTCGGGCCTCTGGCGCGGTCACCGACAAGAGCCTGAAGCGGATCGCAGTCGATACGACCGTGATGGAGAAAGACATCGCCCATCCGAC
GGATGCCCGGCTTTACGAGCGCGCCCGGGCTCTGATGGTCAGTCTGGCGAAGGAGGCCGGGATCGAGTTGCGCCAGAGCTACGCGCGGCTTGCCCCGCGT
CTCGCCGCCCAGGTCGGGCGTTATGCCCATGCCCGGCAGTTCAAGCGCATGCGCAAGGCCCTGCGCCAGCTCAAGGGCTATGCCGGCAGGATCCGCCGGG
ACCTGCGCCGGCATTTGCAGGACATCCCTGAGGGCGCCCTGCGCGACAAGGTGCTTGAAGCGCTCTGGCTGGTTGGTCGCCTGCTCGCGCAGACCCCGAA
GAGCAAGGACAAGATTTACTCCCTGCACGAGCCCGAGGTCGATTGCATCTCCAAGGGCAAGGCGCGGGTCCGCTACGAATTCGGCACCAAGGTCAGCCTC
GCCACGACCATCGACGAAGGTTTCGTCGTCGGCGCCCGCAGCTTTGCCGGCAACCCCTATGATGGCCACACCCTGGCACCTGCACTGGAGCAGGTCGCGA
TCCTGACCGACCAGGTGCCCGATCTCGCCGTCGTCGACCGCGGCTATCGCGGCCATGGCGTGGGCACCACCAAGATCCTGATCAGCGGCATGCGGCGCGG
CATCACGCCGTTACTGGCCAAGCTCCTGAAACGACGCAGCGCCATCGAACCCGAAATCGGTCACATGAAGACCGACGGACGTCTTGCCAGATGCCCGCTG
AAGGGCCGCATTGGCGACGCGGTCTTCGCCGTTCTCTGTGCCTGTGGCCACAATATCCGCAAGATCCTGGTCCATCTCAGGGTTCTTTGGGCCCTGTTAC
TCCACCTGATTGCGGCAATCATCTGCCGCGAAAGGGCCCTTCACAGGCAAGCATTGGCCGCCTGACACGGTTGTTCAGAGCCGAC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1347 bp | 448 aa | 119 | 1465 | + | No |
Chemistry : DDE
ORF sequence :
MKPHSRVPEQDDLLRPRLVDMIDARHELVKLATLIDWDFFEREWVSFFPSHQGRPATSPRLVAGLMYLQHAFKLSDEAVVARWIENPYYQHFTGETFFQH
RPPIDPSSLTRWRKRIGEEGVEWLLTKTIKAARASGAVTDKSLKRIAVDTTVMEKDIAHPTDARLYERARALMVSLAKEAGIELRQSYARLAPRLAAQVG
RYAHARQFKRMRKALRQLKGYAGRIRRDLRRHLQDIPEGALRDKVLEALWLVGRLLAQTPKSKDKIYSLHEPEVDCISKGKARVRYEFGTKVSLATTIDE
GFVVGARSFAGNPYDGHTLAPALEQVAILTDQVPDLAVVDRGYRGHGVGTTKILISGMRRGITPLLAKLLKRRSAIEPEIGHMKTDGRLARCPLKGRIGD
AVFAVLCACGHNIRKILVHLRVLWALLLHLIAAIICRERALHRQALAA
RPPIDPSSLTRWRKRIGEEGVEWLLTKTIKAARASGAVTDKSLKRIAVDTTVMEKDIAHPTDARLYERARALMVSLAKEAGIELRQSYARLAPRLAAQVG
RYAHARQFKRMRKALRQLKGYAGRIRRDLRRHLQDIPEGALRDKVLEALWLVGRLLAQTPKSKDKIYSLHEPEVDCISKGKARVRYEFGTKVSLATTIDE
GFVVGARSFAGNPYDGHTLAPALEQVAILTDQVPDLAVVDRGYRGHGVGTTKILISGMRRGITPLLAKLLKRRSAIEPEIGHMKTDGRLARCPLKGRIGD
AVFAVLCACGHNIRKILVHLRVLWALLLHLIAAIICRERALHRQALAA
Blast result :
Comments
ISPye7 is 94% aa similar to ISPhae1.
ISPye7 was identified by in silico nucleotide sequence analysis of Paracoccus yeei strain FDAARGOS_252 (1 copy) and P. yeei CCUG 32053 (isoforms of ISPye7 - 4 copies).
ISPye7 was identified by in silico nucleotide sequence analysis of Paracoccus yeei strain FDAARGOS_252 (1 copy) and P. yeei CCUG 32053 (isoforms of ISPye7 - 4 copies).
References
1] Chmielowska C., Szuplewska M., Bartosik D. (2018) Direct submission.
2] Goldberg,B., Campos,J., Tallon,L., Sadzewicz,L., Sengamalay,N., Ott,S., Godinez,A., Nagaraj,S., Vavikolanu,K., Aluvathingal,J., Nadendla,S. and Sichtig,H. (2017) Direct GenBank submission.
2] Goldberg,B., Campos,J., Tallon,L., Sadzewicz,L., Sengamalay,N., Ott,S., Godinez,A., Nagaraj,S., Vavikolanu,K., Aluvathingal,J., Nadendla,S. and Sichtig,H. (2017) Direct GenBank submission.