ISCfr13
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
HE578057 | ND | Citrobacter freundii | Citrobacter freundii plasmid pNDM-CIT Shigella sp. MO17 plasmid pMO17_54 |
DNA section
IS Length : 1525 bp
Ends
Left end : GGCTGCTGTGTGCCAGATATAGTCATTCACACCCTGAGAGTTACACTTTTAAGTGATTCAGGGTATGCGCTTATTGGTTACGAATATTGTGCCAGAATCA
Right end : ACGACGAAGCGAAATATTTGCTGGCACTGGAAGCACGAAAGTCGCCCTTACTGAAGCCATAAAAAGCTTGTCGAATGTCTCAGGGCGTGAAGCGGACGTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACATCTTAAC | ATAGGAAGCA | 0 |
DNA sequence
GGCTGCTGTGTGCCAGATATAGTCATTCACACCCTGAGAGTTACACTTTTAAGTGATTCAGGGTATGCGCTTATTGGTTACGAATATTGTGCCAGAATCA
TGTGATTCGATGATTGCCGCTTTGCTTTCGAGCCAGTAAGTGCTCCACGTTCGCTAACGAATACTCAGGGCATGCAGAAAAACTGCTGACTATATTTCTT
TCGAAGAGCGTGGAATGCATACCAATCCCCGATAAAAAGGAGTTGGTGATGACTGCGAAAGATCAGTTTGCTGCTCATGTTGGTTTGGACTGGGCGGATA
AAAAACACGATGTCTGCGTTCAGTTTAAAAACGGTGATCGCATATTCCATGTGATTGAACATACGCCTGAGGCACTTGATATCTGGCTCAATGAGTTACA
CCAGAGGGCGAAAGGCAGGATTGCTATTGCCGTTGAGCTGAAGAAAGGCCCGGTGGTGTATGCACTCCAGAAGTACCCATTTGTCACTGTTTTTCCAGTA
CACGCGTTGTCACTGGCCCGCTACCGACAGGCTTTCTGGCCCAGCGGCGCGAAGGATGATCCGCAGGATGCTGAGCTGGCATTAGACCTGATGCTACGTT
ATCCCCACAAGATAAAAGCCATTGAAGCCGACAATCCGGATATCCGATTACTCCAGCAATTAGTTGAGCAGCGCCGACTGCTGGTCGAAGACAAGCGTCG
CTTTGTTAATCGGCTCATCAATACGCTTAAGCAGTATTACCCTCAGCCCCTGGAATGGTTCTCCCATCGGGACAGCTCACTGTTCTGCGAGCTAATCATT
CGCTGGCCGAGTCTGCAACAACTCAAACGGGCTCGCAGCGATACTGTCCGTCATTTTATGAATGCTAAAGGTGGTCCTGCTGTTGCATATACCGAACAGC
GGGTTGCAAGTATTGCCAGCGCTATTCCCCTGACCACCGATAAAACTGTCATCGAGGCAAATGCCTTGATGGCAACAGCACTTGCATCCCAAATCAAACT
GACAGGCGACCTAATCAGAACCTACGATGAACGTATTGAATCCTTATTCGATACTCTTCCGGATGCAGAACTGTTCAAATCACTTCCTGGAATGGGACCG
TGTATGGGCCCACGGATGCTTGCAGCACTGGGTGATAACCGCGACCGCTTCAACAGCGCCGAAGAAATTCAAAACTACGCTGGCATCGCACCAGTAACCG
AGCGAAGTGGTCAAAAATCCTGGGTACACTGGCGTTGGCAGTGCGCGAAGTTCGTCCGACAGACATTCGTGGAATGGACTGCGAAGACGGTTAACTCATC
GTACTGGGCCAGACTTTATTACCAGGGCCAGCGAGAAAAAGGGAAATCTCATCAGTCAGCGATCCGGGCTCTGGCATTTAAATGGATAAGGATCATTTAC
CACTGCTGGAAGACCAGAACCCGGTACGACGAAGCGAAATATTTGCTGGCACTGGAAGCACGAAAGTCGCCCTTACTGAAGCCATAAAAAGCTTGTCGAA
TGTCTCAGGGCGTGAAGCGGACGTT
TGTGATTCGATGATTGCCGCTTTGCTTTCGAGCCAGTAAGTGCTCCACGTTCGCTAACGAATACTCAGGGCATGCAGAAAAACTGCTGACTATATTTCTT
TCGAAGAGCGTGGAATGCATACCAATCCCCGATAAAAAGGAGTTGGTGATGACTGCGAAAGATCAGTTTGCTGCTCATGTTGGTTTGGACTGGGCGGATA
AAAAACACGATGTCTGCGTTCAGTTTAAAAACGGTGATCGCATATTCCATGTGATTGAACATACGCCTGAGGCACTTGATATCTGGCTCAATGAGTTACA
CCAGAGGGCGAAAGGCAGGATTGCTATTGCCGTTGAGCTGAAGAAAGGCCCGGTGGTGTATGCACTCCAGAAGTACCCATTTGTCACTGTTTTTCCAGTA
CACGCGTTGTCACTGGCCCGCTACCGACAGGCTTTCTGGCCCAGCGGCGCGAAGGATGATCCGCAGGATGCTGAGCTGGCATTAGACCTGATGCTACGTT
ATCCCCACAAGATAAAAGCCATTGAAGCCGACAATCCGGATATCCGATTACTCCAGCAATTAGTTGAGCAGCGCCGACTGCTGGTCGAAGACAAGCGTCG
CTTTGTTAATCGGCTCATCAATACGCTTAAGCAGTATTACCCTCAGCCCCTGGAATGGTTCTCCCATCGGGACAGCTCACTGTTCTGCGAGCTAATCATT
CGCTGGCCGAGTCTGCAACAACTCAAACGGGCTCGCAGCGATACTGTCCGTCATTTTATGAATGCTAAAGGTGGTCCTGCTGTTGCATATACCGAACAGC
GGGTTGCAAGTATTGCCAGCGCTATTCCCCTGACCACCGATAAAACTGTCATCGAGGCAAATGCCTTGATGGCAACAGCACTTGCATCCCAAATCAAACT
GACAGGCGACCTAATCAGAACCTACGATGAACGTATTGAATCCTTATTCGATACTCTTCCGGATGCAGAACTGTTCAAATCACTTCCTGGAATGGGACCG
TGTATGGGCCCACGGATGCTTGCAGCACTGGGTGATAACCGCGACCGCTTCAACAGCGCCGAAGAAATTCAAAACTACGCTGGCATCGCACCAGTAACCG
AGCGAAGTGGTCAAAAATCCTGGGTACACTGGCGTTGGCAGTGCGCGAAGTTCGTCCGACAGACATTCGTGGAATGGACTGCGAAGACGGTTAACTCATC
GTACTGGGCCAGACTTTATTACCAGGGCCAGCGAGAAAAAGGGAAATCTCATCAGTCAGCGATCCGGGCTCTGGCATTTAAATGGATAAGGATCATTTAC
CACTGCTGGAAGACCAGAACCCGGTACGACGAAGCGAAATATTTGCTGGCACTGGAAGCACGAAAGTCGCCCTTACTGAAGCCATAAAAAGCTTGTCGAA
TGTCTCAGGGCGTGAAGCGGACGTT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1239 bp | 412 aa | 249 | 1487 | + | No |
Chemistry : DEDD
ORF sequence :
MTAKDQFAAHVGLDWADKKHDVCVQFKNGDRIFHVIEHTPEALDIWLNELHQRAKGRIAIAVELKKGPVVYALQKYPFVTVFPVHALSLARYRQAFWPSG
AKDDPQDAELALDLMLRYPHKIKAIEADNPDIRLLQQLVEQRRLLVEDKRRFVNRLINTLKQYYPQPLEWFSHRDSSLFCELIIRWPSLQQLKRARSDTV
RHFMNAKGGPAVAYTEQRVASIASAIPLTTDKTVIEANALMATALASQIKLTGDLIRTYDERIESLFDTLPDAELFKSLPGMGPCMGPRMLAALGDNRDR
FNSAEEIQNYAGIAPVTERSGQKSWVHWRWQCAKFVRQTFVEWTAKTVNSSYWARLYYQGQREKGKSHQSAIRALAFKWIRIIYHCWKTRTRYDEAKYLL
ALEARKSPLLKP
AKDDPQDAELALDLMLRYPHKIKAIEADNPDIRLLQQLVEQRRLLVEDKRRFVNRLINTLKQYYPQPLEWFSHRDSSLFCELIIRWPSLQQLKRARSDTV
RHFMNAKGGPAVAYTEQRVASIASAIPLTTDKTVIEANALMATALASQIKLTGDLIRTYDERIESLFDTLPDAELFKSLPGMGPCMGPRMLAALGDNRDR
FNSAEEIQNYAGIAPVTERSGQKSWVHWRWQCAKFVRQTFVEWTAKTVNSSYWARLYYQGQREKGKSHQSAIRALAFKWIRIIYHCWKTRTRYDEAKYLL
ALEARKSPLLKP
Blast result :
Comments
ISCfr13 is 79% aa similar to ISCsp4.
References
1] Dongsheng Zhou (2016) Direct submission.
2] Dolejska,M., Villa,L., Poirel,L., Nordmann,P. and Carattoli,A. (2013) J. Antimicrob. Chemother. 68 (1), 34-39.
3] Norman,A. (2011) Direct GenBank submission.
2] Dolejska,M., Villa,L., Poirel,L., Nordmann,P. and Carattoli,A. (2013) J. Antimicrob. Chemother. 68 (1), 34-39.
3] Norman,A. (2011) Direct GenBank submission.