ISCfr13

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
HE578057 ND Citrobacter freundii
Citrobacter freundii plasmid pNDM-CIT
Shigella sp. MO17 plasmid pMO17_54
DNA section
IS Length : 1525 bp

Ends


Left end : GGCTGCTGTGTGCCAGATATAGTCATTCACACCCTGAGAGTTACACTTTTAAGTGATTCAGGGTATGCGCTTATTGGTTACGAATATTGTGCCAGAATCA
Right end : ACGACGAAGCGAAATATTTGCTGGCACTGGAAGCACGAAAGTCGCCCTTACTGAAGCCATAAAAAGCTTGTCGAATGTCTCAGGGCGTGAAGCGGACGTT

Insertion site


Left flankDirect repeatRight flankDR Length
ACATCTTAACATAGGAAGCA0

DNA sequence

GGCTGCTGTGTGCCAGATATAGTCATTCACACCCTGAGAGTTACACTTTTAAGTGATTCAGGGTATGCGCTTATTGGTTACGAATATTGTGCCAGAATCA
TGTGATTCGATGATTGCCGCTTTGCTTTCGAGCCAGTAAGTGCTCCACGTTCGCTAACGAATACTCAGGGCATGCAGAAAAACTGCTGACTATATTTCTT
TCGAAGAGCGTGGAATGCATACCAATCCCCGATAAAAAGGAGTTGGTGATGACTGCGAAAGATCAGTTTGCTGCTCATGTTGGTTTGGACTGGGCGGATA
AAAAACACGATGTCTGCGTTCAGTTTAAAAACGGTGATCGCATATTCCATGTGATTGAACATACGCCTGAGGCACTTGATATCTGGCTCAATGAGTTACA
CCAGAGGGCGAAAGGCAGGATTGCTATTGCCGTTGAGCTGAAGAAAGGCCCGGTGGTGTATGCACTCCAGAAGTACCCATTTGTCACTGTTTTTCCAGTA
CACGCGTTGTCACTGGCCCGCTACCGACAGGCTTTCTGGCCCAGCGGCGCGAAGGATGATCCGCAGGATGCTGAGCTGGCATTAGACCTGATGCTACGTT
ATCCCCACAAGATAAAAGCCATTGAAGCCGACAATCCGGATATCCGATTACTCCAGCAATTAGTTGAGCAGCGCCGACTGCTGGTCGAAGACAAGCGTCG
CTTTGTTAATCGGCTCATCAATACGCTTAAGCAGTATTACCCTCAGCCCCTGGAATGGTTCTCCCATCGGGACAGCTCACTGTTCTGCGAGCTAATCATT
CGCTGGCCGAGTCTGCAACAACTCAAACGGGCTCGCAGCGATACTGTCCGTCATTTTATGAATGCTAAAGGTGGTCCTGCTGTTGCATATACCGAACAGC
GGGTTGCAAGTATTGCCAGCGCTATTCCCCTGACCACCGATAAAACTGTCATCGAGGCAAATGCCTTGATGGCAACAGCACTTGCATCCCAAATCAAACT
GACAGGCGACCTAATCAGAACCTACGATGAACGTATTGAATCCTTATTCGATACTCTTCCGGATGCAGAACTGTTCAAATCACTTCCTGGAATGGGACCG
TGTATGGGCCCACGGATGCTTGCAGCACTGGGTGATAACCGCGACCGCTTCAACAGCGCCGAAGAAATTCAAAACTACGCTGGCATCGCACCAGTAACCG
AGCGAAGTGGTCAAAAATCCTGGGTACACTGGCGTTGGCAGTGCGCGAAGTTCGTCCGACAGACATTCGTGGAATGGACTGCGAAGACGGTTAACTCATC
GTACTGGGCCAGACTTTATTACCAGGGCCAGCGAGAAAAAGGGAAATCTCATCAGTCAGCGATCCGGGCTCTGGCATTTAAATGGATAAGGATCATTTAC
CACTGCTGGAAGACCAGAACCCGGTACGACGAAGCGAAATATTTGCTGGCACTGGAAGCACGAAAGTCGCCCTTACTGAAGCCATAAAAAGCTTGTCGAA
TGTCTCAGGGCGTGAAGCGGACGTT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1239 bp412 aa2491487+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MTAKDQFAAHVGLDWADKKHDVCVQFKNGDRIFHVIEHTPEALDIWLNELHQRAKGRIAIAVELKKGPVVYALQKYPFVTVFPVHALSLARYRQAFWPSG
AKDDPQDAELALDLMLRYPHKIKAIEADNPDIRLLQQLVEQRRLLVEDKRRFVNRLINTLKQYYPQPLEWFSHRDSSLFCELIIRWPSLQQLKRARSDTV
RHFMNAKGGPAVAYTEQRVASIASAIPLTTDKTVIEANALMATALASQIKLTGDLIRTYDERIESLFDTLPDAELFKSLPGMGPCMGPRMLAALGDNRDR
FNSAEEIQNYAGIAPVTERSGQKSWVHWRWQCAKFVRQTFVEWTAKTVNSSYWARLYYQGQREKGKSHQSAIRALAFKWIRIIYHCWKTRTRYDEAKYLL
ALEARKSPLLKP

 

Blast result :
Comments
ISCfr13 is 79% aa similar to ISCsp4.
References
1] Dongsheng Zhou (2016) Direct submission.
2] Dolejska,M., Villa,L., Poirel,L., Nordmann,P. and Carattoli,A. (2013) J. Antimicrob. Chemother. 68 (1), 34-39.
3] Norman,A. (2011) Direct GenBank submission.