ISC1359

  • Family ISH3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AJ270983 Y Sulfolobus solfataricus
Sulfolobus solfataricus PH1-16
DNA section
IS Length : 1359 bp

Ends


IR Length : 29/31

IRL : CAGTATGGGAATCTCATTTTTTGCGTAAAAAACGAGATGAATGGAATACA
IRR : CAGTATGGGAATCTCATTTTTCTGATATAAATGATAATATATGTAAGATT

Insertion site


Left flankDirect repeatRight flankDR Length
NNNNNNNNNNACTTNNNNNNNNNN4
NNNNNNNNNNACGTNNNNNNNNNN4

DNA sequence

CAGTATGGGAATCTCATTTTTTGCGTAAAAAACGAGATGAATGGAATACAGAAAAAGTTGAGAGGATGAGAATTTCTGGAGAAAAGTTTGTATATACGAG
GGCGAACCTGAATATATGAAACATGAGAATACAACTAAACCGGCGAAGTTCAACCGGGACTTCGCCAGGTCCGCCCTCAAGATAATTTACTCGGTCCTCA
CTAAAATACTTTTCCCTGAGGAACTCCTCAGTGCCTTGCTTAAGGCGAGTGGGAGCTACTTGAGCAGGTTGGGGAAAGATGGGAGAAGAGCGTTGAGAAA
GTTGAACGCGGTTCAAGTTGAGGACGTGAGGGATGCGTTGAGGAAGATGGGAAGGATGACGTTAAGGGGAGTCAGGGACAGGAGGGTAGCAGTGGACTTC
CATGCCATACCTCAATATCACGCTGACAAGAGTTTCTTGAGTAGGATAAAGCCAACTAAGGGGACGTCGTGGGGACTGGTTCAAGCTGCGATCTTCCTCC
TGGGGAGGACGAGGAGCTTCTTGGACGTGATCCCAGTGACCGTGAAGAACGTAGCTGAAGGTTTCAAGGCGGTGATGGAGGTAATCGTGAAGGAGTTGGA
GGAGGACAAGCTGAGGCTCGTCATGGTCTTCGCGGACAGGGAGTTCGCGGTGAACGAAGTGATTAGGTTCCTCTTGGAGTTGGGCTTGGACTTCGTCATA
TCTGCCAAGGCCCAGATGTACAAGAAGTACAAGGGGATGTTGCAAGATGTGGATGTGAGTTTTGGCGGAGTTAGATATACTGGATTTCTCTGCGTGAGAC
ATGGGAGTGGAGCTTATCTCATTATTCTGAGGAAGGAAGACGGCAAGATTATTGCCTTCCTCGTGAGGAAGGAGATGGATCTTTATGATGCCATAGTCCT
TGCCGAGATGTATAGGGAGAGGTGGGGGATAGAGAACGCCTTCCGCTCTCTTGAGGAGTTCAGGATCAGGACTAGGACTTGTGACGTGAGGAAGGAATTG
GTTCTCGTTCTGCTTTCCTATCTTCTCTTGAATGTCTGGTTCTTGATCCGCTCTTGGAGGAAGGTAAAGTTGTGGGAGTTCTCGGTCTCCCTCTCGAATC
TCCTCGATCGGGAGGTAAGAGTGGAACAAGAACGCGCGTTCCGTGAAGTGAAGACGTCATTCCCCCAGACTCCAGCTAACCCTATGCACCTCCTTCCAGC
TACGTGAAATTAATTCTATATATTTATATTCTGCTATTGAAAACTGACTTATTAACTGTCATTTTCATAAAATATATGCAGTTATATTTGAATAAAACTG
GTGCGGTTCAATCTTACATATATTATCATTTATATCAGAAAAATGAGATTCCCATACTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1092 bp363 aa1161207+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKHENTTKPAKFNRDFARSALKIIYSVLTKILFPEELLSALLKASGSYLSRLGKDGRRALRKLNAVQVEDVRDALRKMGRMTLRGVRDRRVAVDFHAIPQ
YHADKSFLSRIKPTKGTSWGLVQAAIFLLGRTRSFLDVIPVTVKNVAEGFKAVMEVIVKELEEDKLRLVMVFADREFAVNEVIRFLLELGLDFVISAKAQ
MYKKYKGMLQDVDVSFGGVRYTGFLCVRHGSGAYLIILRKEDGKIIAFLVRKEMDLYDAIVLAEMYRERWGIENAFRSLEEFRIRTRTCDVRKELVLVLL
SYLLLNVWFLIRSWRKVKLWEFSVSLSNLLDREVRVEQERAFREVKTSFPQTPANPMHLLPAT

 

Blast result :
Comments
There are 5 copies of ISC1359 in Sulfolobus solfataricus. No copies were found in S. shibatae , S. acidocaldarius , and Acidianus ambivalens.
References
1] Martusewitsch,E., Sensen,C.W. and Schleper,C.(2000) J.Bacteriol 2574-2581