ISC1359
- Family ISH3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AJ270983 | Y | Sulfolobus solfataricus | Sulfolobus solfataricus PH1-16 |
DNA section
IS Length : 1359 bp
Ends
IR Length : 29/31
IRL : CAGTATGGGAATCTCATTTTTTGCGTAAAAAACGAGATGAATGGAATACA
IRR : CAGTATGGGAATCTCATTTTTCTGATATAAATGATAATATATGTAAGATT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
NNNNNNNNNN | ACTT | NNNNNNNNNN | 4 |
NNNNNNNNNN | ACGT | NNNNNNNNNN | 4 |
DNA sequence
CAGTATGGGAATCTCATTTTTTGCGTAAAAAACGAGATGAATGGAATACAGAAAAAGTTGAGAGGATGAGAATTTCTGGAGAAAAGTTTGTATATACGAG
GGCGAACCTGAATATATGAAACATGAGAATACAACTAAACCGGCGAAGTTCAACCGGGACTTCGCCAGGTCCGCCCTCAAGATAATTTACTCGGTCCTCA
CTAAAATACTTTTCCCTGAGGAACTCCTCAGTGCCTTGCTTAAGGCGAGTGGGAGCTACTTGAGCAGGTTGGGGAAAGATGGGAGAAGAGCGTTGAGAAA
GTTGAACGCGGTTCAAGTTGAGGACGTGAGGGATGCGTTGAGGAAGATGGGAAGGATGACGTTAAGGGGAGTCAGGGACAGGAGGGTAGCAGTGGACTTC
CATGCCATACCTCAATATCACGCTGACAAGAGTTTCTTGAGTAGGATAAAGCCAACTAAGGGGACGTCGTGGGGACTGGTTCAAGCTGCGATCTTCCTCC
TGGGGAGGACGAGGAGCTTCTTGGACGTGATCCCAGTGACCGTGAAGAACGTAGCTGAAGGTTTCAAGGCGGTGATGGAGGTAATCGTGAAGGAGTTGGA
GGAGGACAAGCTGAGGCTCGTCATGGTCTTCGCGGACAGGGAGTTCGCGGTGAACGAAGTGATTAGGTTCCTCTTGGAGTTGGGCTTGGACTTCGTCATA
TCTGCCAAGGCCCAGATGTACAAGAAGTACAAGGGGATGTTGCAAGATGTGGATGTGAGTTTTGGCGGAGTTAGATATACTGGATTTCTCTGCGTGAGAC
ATGGGAGTGGAGCTTATCTCATTATTCTGAGGAAGGAAGACGGCAAGATTATTGCCTTCCTCGTGAGGAAGGAGATGGATCTTTATGATGCCATAGTCCT
TGCCGAGATGTATAGGGAGAGGTGGGGGATAGAGAACGCCTTCCGCTCTCTTGAGGAGTTCAGGATCAGGACTAGGACTTGTGACGTGAGGAAGGAATTG
GTTCTCGTTCTGCTTTCCTATCTTCTCTTGAATGTCTGGTTCTTGATCCGCTCTTGGAGGAAGGTAAAGTTGTGGGAGTTCTCGGTCTCCCTCTCGAATC
TCCTCGATCGGGAGGTAAGAGTGGAACAAGAACGCGCGTTCCGTGAAGTGAAGACGTCATTCCCCCAGACTCCAGCTAACCCTATGCACCTCCTTCCAGC
TACGTGAAATTAATTCTATATATTTATATTCTGCTATTGAAAACTGACTTATTAACTGTCATTTTCATAAAATATATGCAGTTATATTTGAATAAAACTG
GTGCGGTTCAATCTTACATATATTATCATTTATATCAGAAAAATGAGATTCCCATACTG
GGCGAACCTGAATATATGAAACATGAGAATACAACTAAACCGGCGAAGTTCAACCGGGACTTCGCCAGGTCCGCCCTCAAGATAATTTACTCGGTCCTCA
CTAAAATACTTTTCCCTGAGGAACTCCTCAGTGCCTTGCTTAAGGCGAGTGGGAGCTACTTGAGCAGGTTGGGGAAAGATGGGAGAAGAGCGTTGAGAAA
GTTGAACGCGGTTCAAGTTGAGGACGTGAGGGATGCGTTGAGGAAGATGGGAAGGATGACGTTAAGGGGAGTCAGGGACAGGAGGGTAGCAGTGGACTTC
CATGCCATACCTCAATATCACGCTGACAAGAGTTTCTTGAGTAGGATAAAGCCAACTAAGGGGACGTCGTGGGGACTGGTTCAAGCTGCGATCTTCCTCC
TGGGGAGGACGAGGAGCTTCTTGGACGTGATCCCAGTGACCGTGAAGAACGTAGCTGAAGGTTTCAAGGCGGTGATGGAGGTAATCGTGAAGGAGTTGGA
GGAGGACAAGCTGAGGCTCGTCATGGTCTTCGCGGACAGGGAGTTCGCGGTGAACGAAGTGATTAGGTTCCTCTTGGAGTTGGGCTTGGACTTCGTCATA
TCTGCCAAGGCCCAGATGTACAAGAAGTACAAGGGGATGTTGCAAGATGTGGATGTGAGTTTTGGCGGAGTTAGATATACTGGATTTCTCTGCGTGAGAC
ATGGGAGTGGAGCTTATCTCATTATTCTGAGGAAGGAAGACGGCAAGATTATTGCCTTCCTCGTGAGGAAGGAGATGGATCTTTATGATGCCATAGTCCT
TGCCGAGATGTATAGGGAGAGGTGGGGGATAGAGAACGCCTTCCGCTCTCTTGAGGAGTTCAGGATCAGGACTAGGACTTGTGACGTGAGGAAGGAATTG
GTTCTCGTTCTGCTTTCCTATCTTCTCTTGAATGTCTGGTTCTTGATCCGCTCTTGGAGGAAGGTAAAGTTGTGGGAGTTCTCGGTCTCCCTCTCGAATC
TCCTCGATCGGGAGGTAAGAGTGGAACAAGAACGCGCGTTCCGTGAAGTGAAGACGTCATTCCCCCAGACTCCAGCTAACCCTATGCACCTCCTTCCAGC
TACGTGAAATTAATTCTATATATTTATATTCTGCTATTGAAAACTGACTTATTAACTGTCATTTTCATAAAATATATGCAGTTATATTTGAATAAAACTG
GTGCGGTTCAATCTTACATATATTATCATTTATATCAGAAAAATGAGATTCCCATACTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1092 bp | 363 aa | 116 | 1207 | + | No |
Chemistry : DDE
ORF sequence :
MKHENTTKPAKFNRDFARSALKIIYSVLTKILFPEELLSALLKASGSYLSRLGKDGRRALRKLNAVQVEDVRDALRKMGRMTLRGVRDRRVAVDFHAIPQ
YHADKSFLSRIKPTKGTSWGLVQAAIFLLGRTRSFLDVIPVTVKNVAEGFKAVMEVIVKELEEDKLRLVMVFADREFAVNEVIRFLLELGLDFVISAKAQ
MYKKYKGMLQDVDVSFGGVRYTGFLCVRHGSGAYLIILRKEDGKIIAFLVRKEMDLYDAIVLAEMYRERWGIENAFRSLEEFRIRTRTCDVRKELVLVLL
SYLLLNVWFLIRSWRKVKLWEFSVSLSNLLDREVRVEQERAFREVKTSFPQTPANPMHLLPAT
YHADKSFLSRIKPTKGTSWGLVQAAIFLLGRTRSFLDVIPVTVKNVAEGFKAVMEVIVKELEEDKLRLVMVFADREFAVNEVIRFLLELGLDFVISAKAQ
MYKKYKGMLQDVDVSFGGVRYTGFLCVRHGSGAYLIILRKEDGKIIAFLVRKEMDLYDAIVLAEMYRERWGIENAFRSLEEFRIRTRTCDVRKELVLVLL
SYLLLNVWFLIRSWRKVKLWEFSVSLSNLLDREVRVEQERAFREVKTSFPQTPANPMHLLPAT
Blast result :
Comments
There are 5 copies of ISC1359 in Sulfolobus solfataricus. No copies were found in S. shibatae , S. acidocaldarius , and Acidianus ambivalens.
References
1] Martusewitsch,E., Sensen,C.W. and Schleper,C.(2000) J.Bacteriol 2574-2581