ISPcc6
- Family IS4
- Group IS4
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Pectobacterium carotovorum | Pectobacterium carotovorum 3-2 |
DNA section
IS Length : 1452 bp
Ends
IR Length : 32/38
IRL : AAAAAGCGCGGCATTTGCCTAATGCCGATCAGTTAAGGATCGGTTGACCG
IRR : AAAAAGCGCGGCAAATGCCGTAATGCTTGTCAGTTAAGCTTTTGAAGGTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTATTGGGAGACGGCCTGCGCGATGCGCTCGACCCGAAATTGAAAAGCTG | AGCAGTAAGGCAGTTAGAACGAGGTACGTTTGTAGCTGCGGTACTGTGGT | 0 |
DNA sequence
AAAAAGCGCGGCATTTGCCTAATGCCGATCAGTTAAGGATCGGTTGACCGATCCTGTGGCTGTGTAAGAATCCGTAATCTCACCAGGATTACGGATTTTT
TTATGCTGCTCAGCCAGGCTCTCAATACCGTCCATAAATTCACTCCAGAGGCGTTTTCTTCTCTTTCTGAACTTCTTTCACCTGAAATTATTGATGAATG
CCTTGCTGATACCGGCACCGTCACCCTCCGTAAGCGTCGGCTTCCAATGGAAATGATGGTCTGGGCGGTTGCCGGAATGACATTGTTCCGCTCGTTGTCC
ATGAATCAGCTGGTTTCGCACCTCGATATCCTGCTTCCGGGTAAACGTCCCTTTGTTGTTCCCAGTGCGGTCGTTCAGGCTCGTCAGCGGCTGGGGGCTG
ACGTCATCCGGCGGGTATTCGAAAAAACGCGCCAGCTCTGGTTTGAAAAAACGCCGCTATCACACTGGAACGGACTTACCCTGATGGCGATAGATGGCAC
TCTGTGGCGAACGCCGGATACGCCTGAAAATGATGCTGCCTTCGGTCGAACGGCGAATGCCAGCTCTCGCTCTGAATGGCCTCAGGTTCGCATGGTCTGC
CAGATGGAAGTCACCAGCCATCTACTGACAGGAACTGCCTTCGGTAGCGTATCGGCAATCAGCGAAGTTGATCTTGCCGCACAGCTGGCAGAACAAACCC
CGGAACATACGCTGACACTCATGGATAAGGGGTTTTACGCCCTGGGGCTACTGCACCACTGGCAGTCATCGGGTGAGGAAAAGCACTGGCTAATCCCGCT
CAAAAAAGAGACGCAGTATCAGGTAATACAAAAGCAGGGTAAGGGGGATGAAATAGTTGAGCTGCACGTGTCGCCACAGGCGATGCGTAAATGGGATGGC
GTCCCTAAAATCCTGACGGCGAGGCTGGTCAGCAAAGAGGTTAACGGGAAAATAGTTCGCGTTCTGACATCAATGAGCGATCCGCTCAGGTACCCCAAAG
CGGATATCGTGGACTTGTACAGTCATCGCTGGGAAATAGAGCATGGGTTCAGGGAAATGAAACAGCACCTTCTGAATAACGAACTGACGTTAAGAAGCCG
GAAACCAGAACTGGTGGAGCAGGAACTGTGGGGAGTCGTGCTGGCGTATAACCTGCTGCGTTTTATGATGGCGCAGATGGCCTACAGCCTGAAAGGTGTT
GAGCCTTATCAGATAGGTTTTAAGCAGGCAAGTCTTTATCTGACGGCGCAACTGAGTCTGTTGCCAGCGGTAGCACCGGGAAAAATCCCGAAGATAATAA
ATGAGATACTGGAAATGGCAGAGAGTTTTGTTCTGCCGGTGCGGAGGGTGAGACACTACCCAAGAGCGGTAAAAAAGAAGCCGCAACGCTACGCGTTACG
GCTACCTTCAAAAGCTTAACTGACAAGCATTACGGCATTTGCCGCGCTTTTT
TTATGCTGCTCAGCCAGGCTCTCAATACCGTCCATAAATTCACTCCAGAGGCGTTTTCTTCTCTTTCTGAACTTCTTTCACCTGAAATTATTGATGAATG
CCTTGCTGATACCGGCACCGTCACCCTCCGTAAGCGTCGGCTTCCAATGGAAATGATGGTCTGGGCGGTTGCCGGAATGACATTGTTCCGCTCGTTGTCC
ATGAATCAGCTGGTTTCGCACCTCGATATCCTGCTTCCGGGTAAACGTCCCTTTGTTGTTCCCAGTGCGGTCGTTCAGGCTCGTCAGCGGCTGGGGGCTG
ACGTCATCCGGCGGGTATTCGAAAAAACGCGCCAGCTCTGGTTTGAAAAAACGCCGCTATCACACTGGAACGGACTTACCCTGATGGCGATAGATGGCAC
TCTGTGGCGAACGCCGGATACGCCTGAAAATGATGCTGCCTTCGGTCGAACGGCGAATGCCAGCTCTCGCTCTGAATGGCCTCAGGTTCGCATGGTCTGC
CAGATGGAAGTCACCAGCCATCTACTGACAGGAACTGCCTTCGGTAGCGTATCGGCAATCAGCGAAGTTGATCTTGCCGCACAGCTGGCAGAACAAACCC
CGGAACATACGCTGACACTCATGGATAAGGGGTTTTACGCCCTGGGGCTACTGCACCACTGGCAGTCATCGGGTGAGGAAAAGCACTGGCTAATCCCGCT
CAAAAAAGAGACGCAGTATCAGGTAATACAAAAGCAGGGTAAGGGGGATGAAATAGTTGAGCTGCACGTGTCGCCACAGGCGATGCGTAAATGGGATGGC
GTCCCTAAAATCCTGACGGCGAGGCTGGTCAGCAAAGAGGTTAACGGGAAAATAGTTCGCGTTCTGACATCAATGAGCGATCCGCTCAGGTACCCCAAAG
CGGATATCGTGGACTTGTACAGTCATCGCTGGGAAATAGAGCATGGGTTCAGGGAAATGAAACAGCACCTTCTGAATAACGAACTGACGTTAAGAAGCCG
GAAACCAGAACTGGTGGAGCAGGAACTGTGGGGAGTCGTGCTGGCGTATAACCTGCTGCGTTTTATGATGGCGCAGATGGCCTACAGCCTGAAAGGTGTT
GAGCCTTATCAGATAGGTTTTAAGCAGGCAAGTCTTTATCTGACGGCGCAACTGAGTCTGTTGCCAGCGGTAGCACCGGGAAAAATCCCGAAGATAATAA
ATGAGATACTGGAAATGGCAGAGAGTTTTGTTCTGCCGGTGCGGAGGGTGAGACACTACCCAAGAGCGGTAAAAAAGAAGCCGCAACGCTACGCGTTACG
GCTACCTTCAAAAGCTTAACTGACAAGCATTACGGCATTTGCCGCGCTTTTT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1317 bp | 438 aa | 103 | 1419 | + | No |
Chemistry : DDE
ORF sequence :
MLLSQALNTVHKFTPEAFSSLSELLSPEIIDECLADTGTVTLRKRRLPMEMMVWAVAGMTLFRSLSMNQLVSHLDILLPGKRPFVVPSAVVQARQRLGAD
VIRRVFEKTRQLWFEKTPLSHWNGLTLMAIDGTLWRTPDTPENDAAFGRTANASSRSEWPQVRMVCQMEVTSHLLTGTAFGSVSAISEVDLAAQLAEQTP
EHTLTLMDKGFYALGLLHHWQSSGEEKHWLIPLKKETQYQVIQKQGKGDEIVELHVSPQAMRKWDGVPKILTARLVSKEVNGKIVRVLTSMSDPLRYPKA
DIVDLYSHRWEIEHGFREMKQHLLNNELTLRSRKPELVEQELWGVVLAYNLLRFMMAQMAYSLKGVEPYQIGFKQASLYLTAQLSLLPAVAPGKIPKIIN
EILEMAESFVLPVRRVRHYPRAVKKKPQRYALRLPSKA
VIRRVFEKTRQLWFEKTPLSHWNGLTLMAIDGTLWRTPDTPENDAAFGRTANASSRSEWPQVRMVCQMEVTSHLLTGTAFGSVSAISEVDLAAQLAEQTP
EHTLTLMDKGFYALGLLHHWQSSGEEKHWLIPLKKETQYQVIQKQGKGDEIVELHVSPQAMRKWDGVPKILTARLVSKEVNGKIVRVLTSMSDPLRYPKA
DIVDLYSHRWEIEHGFREMKQHLLNNELTLRSRKPELVEQELWGVVLAYNLLRFMMAQMAYSLKGVEPYQIGFKQASLYLTAQLSLLPAVAPGKIPKIIN
EILEMAESFVLPVRRVRHYPRAVKKKPQRYALRLPSKA
Blast result :
Comments
ISPcc6 is 83% aa similar to ISIlo1.
References
1] Yevgeny Nikolaichik (2017) Direct submission to ISfinder