ISPcc6

  • Family IS4
  • Group IS4
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Pectobacterium carotovorum
Pectobacterium carotovorum 3-2
DNA section
IS Length : 1452 bp

Ends


IR Length : 32/38

IRL : AAAAAGCGCGGCATTTGCCTAATGCCGATCAGTTAAGGATCGGTTGACCG
IRR : AAAAAGCGCGGCAAATGCCGTAATGCTTGTCAGTTAAGCTTTTGAAGGTA

Insertion site


Left flankDirect repeatRight flankDR Length
TTATTGGGAGACGGCCTGCGCGATGCGCTCGACCCGAAATTGAAAAGCTGAGCAGTAAGGCAGTTAGAACGAGGTACGTTTGTAGCTGCGGTACTGTGGT0

DNA sequence

AAAAAGCGCGGCATTTGCCTAATGCCGATCAGTTAAGGATCGGTTGACCGATCCTGTGGCTGTGTAAGAATCCGTAATCTCACCAGGATTACGGATTTTT
TTATGCTGCTCAGCCAGGCTCTCAATACCGTCCATAAATTCACTCCAGAGGCGTTTTCTTCTCTTTCTGAACTTCTTTCACCTGAAATTATTGATGAATG
CCTTGCTGATACCGGCACCGTCACCCTCCGTAAGCGTCGGCTTCCAATGGAAATGATGGTCTGGGCGGTTGCCGGAATGACATTGTTCCGCTCGTTGTCC
ATGAATCAGCTGGTTTCGCACCTCGATATCCTGCTTCCGGGTAAACGTCCCTTTGTTGTTCCCAGTGCGGTCGTTCAGGCTCGTCAGCGGCTGGGGGCTG
ACGTCATCCGGCGGGTATTCGAAAAAACGCGCCAGCTCTGGTTTGAAAAAACGCCGCTATCACACTGGAACGGACTTACCCTGATGGCGATAGATGGCAC
TCTGTGGCGAACGCCGGATACGCCTGAAAATGATGCTGCCTTCGGTCGAACGGCGAATGCCAGCTCTCGCTCTGAATGGCCTCAGGTTCGCATGGTCTGC
CAGATGGAAGTCACCAGCCATCTACTGACAGGAACTGCCTTCGGTAGCGTATCGGCAATCAGCGAAGTTGATCTTGCCGCACAGCTGGCAGAACAAACCC
CGGAACATACGCTGACACTCATGGATAAGGGGTTTTACGCCCTGGGGCTACTGCACCACTGGCAGTCATCGGGTGAGGAAAAGCACTGGCTAATCCCGCT
CAAAAAAGAGACGCAGTATCAGGTAATACAAAAGCAGGGTAAGGGGGATGAAATAGTTGAGCTGCACGTGTCGCCACAGGCGATGCGTAAATGGGATGGC
GTCCCTAAAATCCTGACGGCGAGGCTGGTCAGCAAAGAGGTTAACGGGAAAATAGTTCGCGTTCTGACATCAATGAGCGATCCGCTCAGGTACCCCAAAG
CGGATATCGTGGACTTGTACAGTCATCGCTGGGAAATAGAGCATGGGTTCAGGGAAATGAAACAGCACCTTCTGAATAACGAACTGACGTTAAGAAGCCG
GAAACCAGAACTGGTGGAGCAGGAACTGTGGGGAGTCGTGCTGGCGTATAACCTGCTGCGTTTTATGATGGCGCAGATGGCCTACAGCCTGAAAGGTGTT
GAGCCTTATCAGATAGGTTTTAAGCAGGCAAGTCTTTATCTGACGGCGCAACTGAGTCTGTTGCCAGCGGTAGCACCGGGAAAAATCCCGAAGATAATAA
ATGAGATACTGGAAATGGCAGAGAGTTTTGTTCTGCCGGTGCGGAGGGTGAGACACTACCCAAGAGCGGTAAAAAAGAAGCCGCAACGCTACGCGTTACG
GCTACCTTCAAAAGCTTAACTGACAAGCATTACGGCATTTGCCGCGCTTTTT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1317 bp438 aa1031419+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLLSQALNTVHKFTPEAFSSLSELLSPEIIDECLADTGTVTLRKRRLPMEMMVWAVAGMTLFRSLSMNQLVSHLDILLPGKRPFVVPSAVVQARQRLGAD
VIRRVFEKTRQLWFEKTPLSHWNGLTLMAIDGTLWRTPDTPENDAAFGRTANASSRSEWPQVRMVCQMEVTSHLLTGTAFGSVSAISEVDLAAQLAEQTP
EHTLTLMDKGFYALGLLHHWQSSGEEKHWLIPLKKETQYQVIQKQGKGDEIVELHVSPQAMRKWDGVPKILTARLVSKEVNGKIVRVLTSMSDPLRYPKA
DIVDLYSHRWEIEHGFREMKQHLLNNELTLRSRKPELVEQELWGVVLAYNLLRFMMAQMAYSLKGVEPYQIGFKQASLYLTAQLSLLPAVAPGKIPKIIN
EILEMAESFVLPVRRVRHYPRAVKKKPQRYALRLPSKA

 

Blast result :
Comments
ISPcc6 is 83% aa similar to ISIlo1.
References
1] Yevgeny Nikolaichik (2017) Direct submission to ISfinder