ISFw2

  • Family IS5
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AWHF01000021 ND Francisella sp.
Francisella sp. W12-1067
Francisella sp. MA067296
DNA section
IS Length : 1169 bp

Ends


IR Length : 16/20

IRL : GGGCGTGTTGAAAACTAGCCATATATAGAATAATATTTGTTAAAATATAG
IRR : GGGGCTGTTGAAAGCTTACCCAATTTGTGTGTTTAAAGCTTAATTCTTTA

Insertion site


Left flankDirect repeatRight flankDR Length
AGTTTCGCACTTTATGTAAAATTTA4

DNA sequence

GGGCGTGTTGAAAACTAGCCATATATAGAATAATATTTGTTAAAATATAGTTATATTAATTTTCATATGCTTATCTGATGAATCAACTAGAGATGATAAG
TCTTAATGACTTAGTACCGAGAAATCATATATATCGTAAGTTTGTATCGATTTGGAATTTTAAAAATGTTGCTAAGAAATTAAAAAAGTTTGAAAAAGAT
AACCCTTATAAAGGTTATGGAATGCTACGTTTATTTAAATGTTTGCTATTACAATTTATGGAAGATCTTAGCGATAGAGAATTAGAGAAATATCTACAAG
AAAATAACGCAGCAAAATGGTTTTGTGAATTTACATTATTAGAAAAAACTCCCGATCATAGTGTATTTTGTAAATTTAGAAAGAATATAGGTACTCGTTT
TATATCGGAAATTTTTAATGATTTAAGAAAGCAATTAAAACAACAAGGATTTATCAATGAAGTCTTTAGTTTTGTTGATGCTAGTCACTTAATAGCTAAA
GCTAATCTTTGGAAAGAAAGAGATAAAGCTATCAAAGAGAAATATGAAAAGTTAAATAATGAAATACTTCCTAAAGTAGCTATAGATAAGCAAGCACGTA
TAGGCTGTAAAGGTAAAGATAAATTTTGGTATGGTTATAAGAAACATACTAGTGTAGATATGCAGAGTGGACTGATTAATAAAGTAGCTGTGACACCTGC
CAACGTTACAGATGCAAAGGGTATAAAATATGTTTGCCCTGATGGTGGTGCGATTTATGCTGATAAGGGATACTGTACAAAATATGCTAACAAAACTGCC
AGGGATAACTGTTGTGACCTTAAAGCCATAAAGAAGAATAATATGCTTGGTAAAAATCATGATCAAGACAGTTGGTTTAGTGCTATACGTTCACCTTATG
AAAGAGTGTTTGCTCATCAGGATAAACGTGTTAGATATAGAGGAGTTTCAAAAAATCACTTTGCTGAACTGATGAAATCTATTTGCTTCAATCTTAAGCG
ACTTGTAGTGCTTGACCCACTCAATTTGTGCTTGAACTAGGATAAGTGTATCCAAATATCAGAAATATTAATAAAACATAAAGAAAAACTTTAGAATAGT
GGCCTAAGATGCACAGCGTTAAAGAATTAAGCTTTAAACACACAAATTGGGTAAGCTTTCAACAGCCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
963 bp320 aa781040+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNQLEMISLNDLVPRNHIYRKFVSIWNFKNVAKKLKKFEKDNPYKGYGMLRLFKCLLLQFMEDLSDRELEKYLQENNAAKWFCEFTLLEKTPDHSVFCKF
RKNIGTRFISEIFNDLRKQLKQQGFINEVFSFVDASHLIAKANLWKERDKAIKEKYEKLNNEILPKVAIDKQARIGCKGKDKFWYGYKKHTSVDMQSGLI
NKVAVTPANVTDAKGIKYVCPDGGAIYADKGYCTKYANKTARDNCCDLKAIKKNNMLGKNHDQDSWFSAIRSPYERVFAHQDKRVRYRGVSKNHFAELMK
SICFNLKRLVVLDPLNLCLN

 

Blast result :
Comments
ISFw2 is 46% aa similar to ISAtu2.
References
1] Klaus Heuner (2014) Direct submission.
2] Rydzewski,K., Schulz,T., Brzuszkiewicz,E., Holland,G., Luck,C., Fleischer,J., Grunow,R. and Heuner,K. (2014) BMC Microbiol. 14 (1), 169.
3] Kuske,C.R., Challacombe,J.F., Siddaramapa,S. and Petersen,J. (2016) Direct GenBank submission.