ISDev1

  • Family IS21
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP026747 ND Devosia sp.
Devosia sp. I507
Aquamicrobium sp.
DNA section
IS Length : 2491 bp

Ends


IR Length : 20/26

IRL : TGTTGAATGTCACTGAGATCTGACCCTCTAGGGGCAGAAGTTTTCACTGA
IRR : TGTTGATTGTCGCCAGGAACTGACCCGGGATTGTCATTGAGAACTGACCC

Insertion site


Left flankDirect repeatRight flankDR Length
CTCTGTGCTCAGGTCCTCGACACTCATGTCCGTTTGCAGTCGATTGATCGCGC7
AGATGCTGAATCCAAAGAACATTGTGAAAGGCCGGTTGTTTATGAACCGCCTGATCGAAC0
TGAAAGCATCCGTGCCATCGATGCCAGGGGCCCAAATTCCGGGAAACCACTGG7
GGCAAGCCTAAGCTGCGGGTTGACGCTGATAATAGTCGTCAGGCGGGCTCGTACGTGTGG0

DNA sequence

TGTTGAATGTCACTGAGATCTGACCCTCTAGGGGCAGAAGTTTTCACTGAGAAATGACCCATGTTTTGATCGTCCCCTGGCTGTTGGTCGGGGGATCCAG
GAGTGATCGACATGGCGTTATTGAGCGTAATCCGGCGCTGGCATTTTCGTGAGGGGATGCCGATCCGGGAGATCGAGCGGCGCACGGGCTTGTCGCGCAA
CACCATCCGCAAGTATCTGCGATCCGACACGGTGGAGCCCAGGTTCAAGGTGCCGGCGCGGCCCAGCAAGCTGGACGCGTTTGCCCAGAAGCTTTCCGAT
TGGCTGCGCGTGGAAGCGGGTAAATCGCGCAAGCAGCGGCGCACGGCCAGGCAGATGCACCGCGATCTTGTGGTTCTGGGCTATGAAGGCTCGTATGAGC
GTGTCGCGGCGTTTGTGCGGGCCTGGAAGACCGGGCGGCAGCAGGAGCAGCAAACTAGCGGTCGTGGCACCTTCGTACCCCTGGTGTTCGGTGCGGGCGA
GGCCTTCCAGTTCGACTGGAGCGAAGACTGGGCCATCCTGGGCGGCGAGCGCACCAAGCTGCAGGTGGCTCATACCAAGCTGTCGCACAGCCGGGCCTTC
ATCGTGCGGGCCTATCTGCTTCAGACCCATGAGATGCTGTTCGACGCGATGACCCAGGCGTTCCGGGTTCTTGGGGGCGTGCCCCGTCGCGGCATCTTCG
ACAACATGAAGACCGCCGTCGACCGGATCGGCTCGGGCAAGGCTCGGCAGATCAATGCCCGGTTCGCGGCCATGGCCAGCCATTACCTGTTCGAGCCCGA
GTTCTGCAATCCCGCTTCAGGATGGGAAAAGGGTCAGGTGGAAAAGAACGTGCAGGATGCCCGCCGGCGTCTGTGGCAGCCGCTGCCCAGCTTCCCTGAC
CTCGACAGTCTGAACGCCTGGCTGGAAGAGCAGTGCATCGCGCAATGGAGCCAGATCGTGCATGGCGGCCTTCCGGGCAGCGTCGCCGACGTGCATGCCG
GCGAGGTCTCGAGCCTGATGGCATTGGGGCGACCCTTCGATGGCTTTATCGAACAGACCAAGCGCGTCTCCCCGACGTGCCTGGTTCACTTCGATCGCAA
TCGCTACAGCGTGCCGGCCTCGTTCGCCAACCGGCCGGTCAGTCTGCGGATTTACCCCGAGCGGATCGCCGTCGTGGCCGAGGGGCAGGTCCTGTGCGAG
CATCCGCGCATTATCGAGCGGTCCCATCACCAGCCTGGGCGCACGGTCTATGACTGGCGGCACTATCTGGCGGTGATCCAGCGCAAGCCAGGCGCCCTGC
GCAATGGCGCCCCCTTCGCTGATCTGCCCGAGGCGTTCCGTCGCCTGCAGGGCCACCTGCTCAAGCATCCAGGCGGCGATCGGGAAATGGTCGAGATCCT
GGCGCTGGTGCTGCATCACGACGAGCAAGCGGTGCTCAAAGCCGTAGAGGTCGCGCTCGAGGCCGGCGTTCCCACCAAAACCCATGTGCTCAACCTCCTG
CACCGCCTGGTCGATGGCAAGGCCAGCCAGGTCGAAGCGATCGATGCGCCGCAGGCCCTGGTGCTGCGCCAGGAGCCCAGGGCCAACGTTGCCCGCTATG
ACACGCTGCGCGGCAAGGATGTTCGCCATGCGTCATGACCCTGCCAGTGCCGCCGTTATGGTCATGCTCCGCAGCCTCAAGATGCATGGTATGGCCCAGG
CTGTGGGCGAACTGCTCGAACAGGGTGCACCTGCCTTCGATACCGCCGTGCCGATCCTGTCCCAGTTGCTCAAGGCCGAGCTCGCCGAGCGGGAGGTCCG
GTCCATCGCCTATCAGCTCAAGGCTGCCCGCTTCCCCGCCTTCAAGGATCTGTCCGGCTTCGACTTCGCCTCCAGCGAGATTAATGAGGCCATGGTCCAG
CAGCTTTACCGCGGCGCGTTCATCGAGGGCGCCGACAATGTGGTGCTGATCGGTGGCCCGGGCACTGGCAAAACCCACATCGCTACTGCACTCGGCATCC
AGGCGGTGCAGCATCACCACAAGAAGGTCCGCTTCTTCGCCACCGTCGATCTGGTCAATGCGCTCGAGCAGGAAAAGGCCTTCAACAAGGCCGGCCAGTT
GGCCGAGCGCCTGCTGCGCCTCGATCTGATAATCCTCGACGAACTGGGCTACCTGCCGTTTAGCCCGTCAGGCGGGGCGCTGCTGTTCCATCTGCTCAGC
AAGCTCTACGAGCAGACCAGCGTCGTTATCACCACCAACCTCAGCTTCAGCGAATGGGCCGGTGTGTTCGGCGATGCCAAGATGACCACCGCGCTGCTCG
ATCGGCTCACCCATCACTGCCATATCCTGGAGACCGGCAACGACAGCTTCCGCTTCAGGGCGAGCGCCGCGGCGCCCAAAACACGAAAGGAAAAACCCGC
CACTTGACCGTCCCCGCAGCGCGGGAAACTATCGTCCAACCGGGTCAGTTCTCAATGACAATCCCGGGTCAGTTCCTGGCGACAATCAACA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1527 bp508 aa1121638+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MALLSVIRRWHFREGMPIREIERRTGLSRNTIRKYLRSDTVEPRFKVPARPSKLDAFAQKLSDWLRVEAGKSRKQRRTARQMHRDLVVLGYEGSYERVAA
FVRAWKTGRQQEQQTSGRGTFVPLVFGAGEAFQFDWSEDWAILGGERTKLQVAHTKLSHSRAFIVRAYLLQTHEMLFDAMTQAFRVLGGVPRRGIFDNMK
TAVDRIGSGKARQINARFAAMASHYLFEPEFCNPASGWEKGQVEKNVQDARRRLWQPLPSFPDLDSLNAWLEEQCIAQWSQIVHGGLPGSVADVHAGEVS
SLMALGRPFDGFIEQTKRVSPTCLVHFDRNRYSVPASFANRPVSLRIYPERIAVVAEGQVLCEHPRIIERSHHQPGRTVYDWRHYLAVIQRKPGALRNGA
PFADLPEAFRRLQGHLLKHPGGDREMVEILALVLHHDEQAVLKAVEVALEAGVPTKTHVLNLLHRLVDGKASQVEAIDAPQALVLRQEPRANVARYDTLR
GKDVRHAS

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
780 bp259 aa16282407+No
ORF function : Accessory Gene
AG : IS21 helper

ORF sequence :

MRHDPASAAVMVMLRSLKMHGMAQAVGELLEQGAPAFDTAVPILSQLLKAELAEREVRSIAYQLKAARFPAFKDLSGFDFASSEINEAMVQQLYRGAFIE
GADNVVLIGGPGTGKTHIATALGIQAVQHHHKKVRFFATVDLVNALEQEKAFNKAGQLAERLLRLDLIILDELGYLPFSPSGGALLFHLLSKLYEQTSVV
ITTNLSFSEWAGVFGDAKMTTALLDRLTHHCHILETGNDSFRFRASAAAPKTRKEKPAT

 

Blast result :
Comments
ISDev1 is 90% aa similar to ISRsp3.
References
1] Hong (2018) Direct submission.
2] ISfinder annotation (2018).