ISC1217
- Family ISNCY
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| X70335 | Y | Sulfolobus solfataricus | Sulfolobus solfataricus DSM1616 |
DNA section
IS Length : 1147 bp
Ends
IR Length : 10/13
IRL : TAGCATTTATCGGAAAATCCTGGCAGTTCAAGAGGCCCATAAAAACTTTT
IRR : TAGCACTTTACGGTTTTCTCCTCCTCTTGAACAGTTTTTTGATCCCACCC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| ATGAGCTATT | AGCGTA | AATAATTCCA | 6 |
DNA sequence
TAGCATTTATCGGAAAATCCTGGCAGTTCAAGAGGCCCATAAAAACTTTTTAAAATTAGAACCTTTAATTTTGGTATGACCAAAGAATTGACGAGGGAGG
AGTACTATAAGGCATTGGAAAAGGCAGTTAACGAGGTCATACTATCCATGACTGGAACGAGGAAGGACGTTGCCAAGAGGCTACTCTTGGGGGCGGTTGT
GGGAAGAAATGCTACCGAGATAGCTCAAGAGGCCGAGATGGACTACGAGACCGTACTGAATAACTTGGACAAGGCAGCTCAAGCCAAACTAATCGAGGTC
GTGAAGAAGTTAGTCGGGGATCATCCTGTCCTTCTCATAGTGGACGACACCCACGACCACAAGCTCTACGCTAGGGCCATGCCGGTCTCCAGAAACGGGG
CGCAGATCTTCTACTGTAGGGCGCACAAGAGGTTCGAACCCGCGATCCAACTCCTTGTGATTGGCGTCAAGGATCTGGTGAACAACCAGATCTACGTGAT
CCACATAATTGCCTACATACCCCGAAAGGTGGAAGAGGAGCTCAAGCGTAGGGGTGAGGAGGTGAAGTTCAAGACCAAGATAGATGCCCTCTTGGAGTTT
CTCTCCTCCCTCTCAGGTTTGAATGTAAAAGCTAGGGTCTTCGACTCATGGTACGTGAACTCGAGGACTCTCCAAGGGAATACTGTGGGGGAACTCAAGT
CCAGCGCGCGAGTCGTCGAGGGTGGCAGATCCGTGCCCGTTAGCGAGTTCCCCCAAGGGGAGTACCTGGTAGAGTACTTGGGGACTCCCATAAAGTTACT
TGTTATAGATGACTATAAGGGTTACGGGAGGAGGTATTTCTTCTCCACCGACCTTAACGACACGGCTGAAGATATCATAACGACCTGGGAGAACCGTTGG
GACATAGAGGTCTTGATCAGGGAGCTCAAGGCCTTGGGACTCGAGGGTGGGTCCTTCTTGACCTGGGTTAGGAACTCAGGCTTCGTGGCCTTGAAGGCTC
TCTCCCTCCTCGTTGTTCAATACTTCAAGTACTCCACGGGTCTGATGCTCGGGGCCAAAAGGTTGGCCAGATTGATAAAAAGTATTTACCGTGAGGCGGG
TGGGATCAAAAAACTGTTCAAGAGGAGGAGAAAACCGTAAAGTGCTA
AGTACTATAAGGCATTGGAAAAGGCAGTTAACGAGGTCATACTATCCATGACTGGAACGAGGAAGGACGTTGCCAAGAGGCTACTCTTGGGGGCGGTTGT
GGGAAGAAATGCTACCGAGATAGCTCAAGAGGCCGAGATGGACTACGAGACCGTACTGAATAACTTGGACAAGGCAGCTCAAGCCAAACTAATCGAGGTC
GTGAAGAAGTTAGTCGGGGATCATCCTGTCCTTCTCATAGTGGACGACACCCACGACCACAAGCTCTACGCTAGGGCCATGCCGGTCTCCAGAAACGGGG
CGCAGATCTTCTACTGTAGGGCGCACAAGAGGTTCGAACCCGCGATCCAACTCCTTGTGATTGGCGTCAAGGATCTGGTGAACAACCAGATCTACGTGAT
CCACATAATTGCCTACATACCCCGAAAGGTGGAAGAGGAGCTCAAGCGTAGGGGTGAGGAGGTGAAGTTCAAGACCAAGATAGATGCCCTCTTGGAGTTT
CTCTCCTCCCTCTCAGGTTTGAATGTAAAAGCTAGGGTCTTCGACTCATGGTACGTGAACTCGAGGACTCTCCAAGGGAATACTGTGGGGGAACTCAAGT
CCAGCGCGCGAGTCGTCGAGGGTGGCAGATCCGTGCCCGTTAGCGAGTTCCCCCAAGGGGAGTACCTGGTAGAGTACTTGGGGACTCCCATAAAGTTACT
TGTTATAGATGACTATAAGGGTTACGGGAGGAGGTATTTCTTCTCCACCGACCTTAACGACACGGCTGAAGATATCATAACGACCTGGGAGAACCGTTGG
GACATAGAGGTCTTGATCAGGGAGCTCAAGGCCTTGGGACTCGAGGGTGGGTCCTTCTTGACCTGGGTTAGGAACTCAGGCTTCGTGGCCTTGAAGGCTC
TCTCCCTCCTCGTTGTTCAATACTTCAAGTACTCCACGGGTCTGATGCTCGGGGCCAAAAGGTTGGCCAGATTGATAAAAAGTATTTACCGTGAGGCGGG
TGGGATCAAAAAACTGTTCAAGAGGAGGAGAAAACCGTAAAGTGCTA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1065 bp | 354 aa | 82 | 1146 | + | No |
Chemistry : Unknow
ORF sequence :
MTKELTREEYYKALEKAVNEVILSMTGTRKDVAKRLLLGAVVGRNATEIAQEAEMDYETVLNNLDKAAQAKLIEVVKKLVGDHPVLLIVDDTHDHKLYAR
AMPVSRNGAQIFYCRAHKRFEPAIQLLVIGVKDLVNNQIYVIHIIAYIPRKVEEELKRRGEEVKFKTKIDALLEFLSSLSGLNVKARVFDSWYVNSRTLQ
GNTVGELKSSARVVEGGRSVPVSEFPQGEYLVEYLGTPIKLLVIDDYKGYGRRYFFSTDLNDTAEDIITTWENRWDIEVLIRELKALGLEGGSFLTWVRN
SGFVALKALSLLVVQYFKYSTGLMLGAKRLARLIKSIYREAGGIKKLFKRRRKP
AMPVSRNGAQIFYCRAHKRFEPAIQLLVIGVKDLVNNQIYVIHIIAYIPRKVEEELKRRGEEVKFKTKIDALLEFLSSLSGLNVKARVFDSWYVNSRTLQ
GNTVGELKSSARVVEGGRSVPVSEFPQGEYLVEYLGTPIKLLVIDDYKGYGRRYFFSTDLNDTAEDIITTWENRWDIEVLIRELKALGLEGGSFLTWVRN
SGFVALKALSLLVVQYFKYSTGLMLGAKRLARLIKSIYREAGGIKKLFKRRRKP
Blast result :
Comments
Sulfolobus solfataricus DSM1616 is an extremely thermophilic archeon that belongs to the Crenarchaeota kingdom of the Archaea. ISC1217 was found in the lacS (beta-galactosidase and other beta-D-glycosidic activities) gene. ISC1217 is present in several copies (about 8) in the various Sulfolobus solfataricus strains tested.
References