ISEcret5
- Family IS630
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
KP890199 | ND | Endozoicomonas endosymbiont | Endozoicomonas endosymbiont of Diplodus puntazzo |
DNA section
IS Length : 1149 bp
Ends
IR Length : 15/17
IRL : CCAATCGCTTTTTCTAAATCCTTTAGCTGATGCCAGCTATGCTCAGACAT
IRR : CCAATTGCCTTTTCTAACTACTGTATAACTGCCCACTGGCGAGAGCATAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTTGAGGTTCTTA | TA | TTATGAGCTGGT | 2 |
DNA sequence
CCAATCGCTTTTTCTAAATCCTTTAGCTGATGCCAGCTATGCTCAGACATCATTATCAAGCGTTTTATCTGGAACAGATGTCTCGTCGACCACAGCTACC
CGAAGGTTTTGAGGATGTTGATTTTCAGCATGCTGCCCGTCATGCAGATGATAACCGTGAATGCATCCGGTTGTTGGGGCTGTCATTTATTCAACAAGGA
CACTCTGTTTCTGAGACATCCAAACTGCTTAAAGTCACCAATGATGCGGTACATGACTGGCTGCATCGATTTAAAGATGGCGGCCTTCCAGCTATGAAGG
ATCAAGGTGGAAGGGGACGAAAACCCATAATCCCTAAAGAATCTCATGATGAATTCAAAGAAGCCGTTCTCCACTTGCAGGACGAAAAATATGGAGGACG
TATAGTTGGTCGGGATGTTTATAAACTGTTACAAAATGAGTTTGGGACAGATTGCAACCTTCGCACCGTTTATAAACTGCTGCATAGAGTGAAGCTGTCG
TGGATTTCTGGTAGGTCCAAGCACCCAAAACAGGACCTTGAAGAACAGGAGGTTTTTAAAAAAACTTCAAGCAGGAGGTCGTGAAGGTTGTGCCTCTGGG
AGCCTGGGAAAAAGTCATTGATATCTGGTTCCAGGATGAAGCCAGGTTTGGTCAACAGAATTCAATCAGTCGGATATGGGCACCGACGGGCAGTCGCCCC
GGACTTATCCGGCAGCAACAGTTTGAGTATGCTTATGTATTCGGCGCCGTATGCCCTCAACAGGATAGAGCCATTGGCCTTGTTCTACCCTGTGCAAACG
CCAAAGGTCTTGCCCTTCACCTGGAGCTAATCTCTTTAGCGACTGAAGATGGGCATCATGCAGTGGTTCTTCTGGACAGGGCAGGATTCCATATGGCACA
GGATCTCCCGAAGTTTGAAAATGTCAGCCTGCTCTGGTTGCCAGCATGCGCTCCAGAATTAAACAGTTCAGAAAGATTGTGGGAGTGGATGCGGGAGCAT
GATTTGGCCAATAAAGCATTTAGCGGTTACGAAGATATCGTGGATTGCTGCTGCGAGGCCTGGAACAATCTATGCGGCGAAGCTGGACGTCTATTCAGTT
TATGCTCTCGCCAGTGGGCAGTTATACAGTAGTTAGAAAAGGCAATTGG
CGAAGGTTTTGAGGATGTTGATTTTCAGCATGCTGCCCGTCATGCAGATGATAACCGTGAATGCATCCGGTTGTTGGGGCTGTCATTTATTCAACAAGGA
CACTCTGTTTCTGAGACATCCAAACTGCTTAAAGTCACCAATGATGCGGTACATGACTGGCTGCATCGATTTAAAGATGGCGGCCTTCCAGCTATGAAGG
ATCAAGGTGGAAGGGGACGAAAACCCATAATCCCTAAAGAATCTCATGATGAATTCAAAGAAGCCGTTCTCCACTTGCAGGACGAAAAATATGGAGGACG
TATAGTTGGTCGGGATGTTTATAAACTGTTACAAAATGAGTTTGGGACAGATTGCAACCTTCGCACCGTTTATAAACTGCTGCATAGAGTGAAGCTGTCG
TGGATTTCTGGTAGGTCCAAGCACCCAAAACAGGACCTTGAAGAACAGGAGGTTTTTAAAAAAACTTCAAGCAGGAGGTCGTGAAGGTTGTGCCTCTGGG
AGCCTGGGAAAAAGTCATTGATATCTGGTTCCAGGATGAAGCCAGGTTTGGTCAACAGAATTCAATCAGTCGGATATGGGCACCGACGGGCAGTCGCCCC
GGACTTATCCGGCAGCAACAGTTTGAGTATGCTTATGTATTCGGCGCCGTATGCCCTCAACAGGATAGAGCCATTGGCCTTGTTCTACCCTGTGCAAACG
CCAAAGGTCTTGCCCTTCACCTGGAGCTAATCTCTTTAGCGACTGAAGATGGGCATCATGCAGTGGTTCTTCTGGACAGGGCAGGATTCCATATGGCACA
GGATCTCCCGAAGTTTGAAAATGTCAGCCTGCTCTGGTTGCCAGCATGCGCTCCAGAATTAAACAGTTCAGAAAGATTGTGGGAGTGGATGCGGGAGCAT
GATTTGGCCAATAAAGCATTTAGCGGTTACGAAGATATCGTGGATTGCTGCTGCGAGGCCTGGAACAATCTATGCGGCGAAGCTGGACGTCTATTCAGTT
TATGCTCTCGCCAGTGGGCAGTTATACAGTAGTTAGAAAAGGCAATTGG
Recoding section
- Recoding by frameshift
- Frame -1
- Type translational
- Experimentally demonstrated No
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
507 bp | 168 aa | 78 | 584 | + | No |
Description : First part of the transposase
ORF sequence :
MSRRPQLPEGFEDVDFQHAARHADDNRECIRLLGLSFIQQGHSVSETSKLLKVTNDAVHDWLHRFKDGGLPAMKDQGGRGRKPIIPKESHDEFKEAVLHL
QDEKYGGRIVGRDVYKLLQNEFGTDCNLRTVYKLLHRVKLSWISGRSKHPKQDLEEQEVFKKTSSRRS
QDEKYGGRIVGRDVYKLLQNEFGTDCNLRTVYKLLHRVKLSWISGRSKHPKQDLEEQEVFKKTSSRRS
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
573 bp | 190 aa | 560 | 1132 | + | No |
Description : Second part of the transposase
ORF sequence :
KNFKQEVVKVVPLGAWEKVIDIWFQDEARFGQQNSISRIWAPTGSRPGLIRQQQFEYAYVFGAVCPQQDRAIGLVLPCANAKGLALHLELISLATEDGHH
AVVLLDRAGFHMAQDLPKFENVSLLWLPACAPELNSSERLWEWMREHDLANKAFSGYEDIVDCCCEAWNNLCGEAGRLFSLCSRQWAVIQ
AVVLLDRAGFHMAQDLPKFENVSLLWLPACAPELNSSERLWEWMREHDLANKAFSGYEDIVDCCCEAWNNLCGEAGRLFSLCSRQWAVIQ
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1055 bp | 351 aa | 78 | 1132 | + | Yes |
Chemistry : DDE
ORF sequence :
MSRRPQLPEGFEDVDFQHAARHADDNRECIRLLGLSFIQQGHSVSETSKLLKVTNDAVHDWLHRFKDGGLPAMKDQGGRGRKPIIPKESHDEFKEAVLHL
QDEKYGGRIVGRDVYKLLQNEFGTDCNLRTVYKLLHRVKLSWISGRSKHPKQDLEEQEVFKKNFKQEVVKVVPLGAWEKVIDIWFQDEARFGQQNSISRI
WAPTGSRPGLIRQQQFEYAYVFGAVCPQQDRAIGLVLPCANAKGLALHLELISLATEDGHHAVVLLDRAGFHMAQDLPKFENVSLLWLPACAPELNSSER
LWEWMREHDLANKAFSGYEDIVDCCCEAWNNLCGEAGRLFSLCSRQWAVIQ
QDEKYGGRIVGRDVYKLLQNEFGTDCNLRTVYKLLHRVKLSWISGRSKHPKQDLEEQEVFKKNFKQEVVKVVPLGAWEKVIDIWFQDEARFGQQNSISRI
WAPTGSRPGLIRQQQFEYAYVFGAVCPQQDRAIGLVLPCANAKGLALHLELISLATEDGHHAVVLLDRAGFHMAQDLPKFENVSLLWLPACAPELNSSER
LWEWMREHDLANKAFSGYEDIVDCCCEAWNNLCGEAGRLFSLCSRQWAVIQ
Blast result :
Comments
ISEcret5 is 62% aa similar to ISShfr2.
The third ORF is the putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
The third ORF is the putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
References
1] Helena Seth-Smith (2015) Direct submission.