ISLmo4
- Family IS6
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| ND | Listeria monocytogenes | Listeria monocytogenes Listeria monocytogenes CFSAN004330 Listeria welshimeri 40/07 |
DNA section
IS Length : 812 bp
Ends
IR Length : 17/17
IRL : GGTTCTGTTGCAAAGTTTCCCCTCAGATCCATTATAGGGTAAACTGAGTT
IRR : GGTTCTGTTGCAAAGTTCCAAAATGAACAATACTAGTCTAACACTAGCTA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| ccgaccgagacgcgcgggcg | gtttcggtcatatcgtgatc | 0 | |
| AGCCTATGCTTTCTTAAAAC | GTTTCGGTCATATCGTGATC | 0 |
DNA sequence
GGTTCTGTTGCAAAGTTTCCCCTCAGATCCATTATAGGGTAAACTGAGTTTAATAGGAACTAGGAGGAGTAACGAAGATGAACCATTTTAAAGGCAAACA
ATTTCAGAAAGATGTGATTATTGTCGCTGTAGGCTACTATCTTCGGTACAACCTGAGTTATCGTGACGTCCAAGAAATTCTGTACAACCGTGGTATTAAC
GTGTCTCACACCACTGTCTATCGTTGGGTACAGGAATATGGGAAACTACTTTACAACATTTGGAAGAGGAAAAACAAACAGTCCATTTATTCGTGGAAAA
TGGACGAGACCTATATTAAAATCAAAGGAAAATGGCATTATCTTTATCGCGCCATTGATGCAGATGGTCTCACTCTGGATATATGGTTACGGAAAAAGCG
AGATACACAAGCAGCTTACGCCTTTCTCAAGAGATTAGTTAAACAGTTCGATGAACCAAGGGTTCTGGTGACCGATAAAGCTCCCTCTATTGCCAGTGCC
TTTAAAAAATTACAGGCACACGGGTTTTACCAGCGAACAGAACATCGCACGGTGAAATATCTAAATAACCTCATTGAACAAGATCATCGTCCCATCAAGA
GACGAAACAAATTTTATCGAAGCTTACGAACAGCCTCAACCACGATTAAAGGCATGGAAGCCATTCGAGGATTATATAAGAAGAACCGAAAAGAAGGCAC
TCTCTTCGGGTTTTCAGTCTGCACGGAAATGAAGATATTATTAGGAATACCTGCATAAACTATAGCTAGTGTTAGACTAGTATTGTTCATTTTGGAACTT
TGCAACAGAACC
ATTTCAGAAAGATGTGATTATTGTCGCTGTAGGCTACTATCTTCGGTACAACCTGAGTTATCGTGACGTCCAAGAAATTCTGTACAACCGTGGTATTAAC
GTGTCTCACACCACTGTCTATCGTTGGGTACAGGAATATGGGAAACTACTTTACAACATTTGGAAGAGGAAAAACAAACAGTCCATTTATTCGTGGAAAA
TGGACGAGACCTATATTAAAATCAAAGGAAAATGGCATTATCTTTATCGCGCCATTGATGCAGATGGTCTCACTCTGGATATATGGTTACGGAAAAAGCG
AGATACACAAGCAGCTTACGCCTTTCTCAAGAGATTAGTTAAACAGTTCGATGAACCAAGGGTTCTGGTGACCGATAAAGCTCCCTCTATTGCCAGTGCC
TTTAAAAAATTACAGGCACACGGGTTTTACCAGCGAACAGAACATCGCACGGTGAAATATCTAAATAACCTCATTGAACAAGATCATCGTCCCATCAAGA
GACGAAACAAATTTTATCGAAGCTTACGAACAGCCTCAACCACGATTAAAGGCATGGAAGCCATTCGAGGATTATATAAGAAGAACCGAAAAGAAGGCAC
TCTCTTCGGGTTTTCAGTCTGCACGGAAATGAAGATATTATTAGGAATACCTGCATAAACTATAGCTAGTGTTAGACTAGTATTGTTCATTTTGGAACTT
TGCAACAGAACC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 681 bp | 226 aa | 78 | 758 | + | No |
Chemistry : DDE
ORF sequence :
MNHFKGKQFQKDVIIVAVGYYLRYNLSYRDVQEILYNRGINVSHTTVYRWVQEYGKLLYNIWKRKNKQSIYSWKMDETYIKIKGKWHYLYRAIDADGLTL
DIWLRKKRDTQAAYAFLKRLVKQFDEPRVLVTDKAPSIASAFKKLQAHGFYQRTEHRTVKYLNNLIEQDHRPIKRRNKFYRSLRTASTTIKGMEAIRGLY
KKNRKEGTLFGFSVCTEMKILLGIPA
DIWLRKKRDTQAAYAFLKRLVKQFDEPRVLVTDKAPSIASAFKKLQAHGFYQRTEHRTVKYLNNLIEQDHRPIKRRNKFYRSLRTASTTIKGMEAIRGLY
KKNRKEGTLFGFSVCTEMKILLGIPA
Blast result :
Comments
ISLmo4 is 97% aa similar to IS1216E.
ISLmo4 was identified by in silico nucleotide sequence analysis of Listeria monocytogenes strain CFSAN004330 plasmid pCFSAN004330. Isoforms of ISLmo4 are present in plasmids of many L. monocytogenes strains.
ISLmo4 was identified by in silico nucleotide sequence analysis of Listeria monocytogenes strain CFSAN004330 plasmid pCFSAN004330. Isoforms of ISLmo4 are present in plasmids of many L. monocytogenes strains.
References
1] Chmielowska, C. and Bartosik, D. (2018) Direct submission .