ISLmo3
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP022021.1 | ND | Listeria monocytogenes | Listeria monocytogenes Listeria monocytogenes CFSAN004330 Listeria welshimeri 40/07 |
DNA section
IS Length : 807 bp
Ends
IR Length : 17/17
IRL : GGTTCTGTTGCAAAGTTTTATTTAACTGATTATTTAGTGTAGAATGGAAG
IRR : GGTTCTGTTGCAAAGTTCAAAGAAGTAAAATGATATCTCAACTATTTTCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATAAAAGATAATTTATATCA | 0 |
DNA sequence
GGTTCTGTTGCAAAGTTTTATTTAACTGATTATTTAGTGTAGAATGGAAGAAACTACACGAGGAGAATAACAATGTCCCATTTTAAAGGTAAACGATTCA
AACAGGATATCATCATGGTAGCCGTGGGCTACTACTTAAGATACAATTTGAGCTATCGTGATGTTTCAGAAATCCTTAATGAGCGTGGAATCAAGGTTTG
TCACACAACTGTTTATCGATGGGTACAAGAATATGGTTCGATTATTTATTGCCTATGGAAGAAAAGAAATAAGTCTGCTAGCGATTCTTGGAGAATGGAT
GAAACATATATTAAAGTAAAAGGAAAATGGCATTATTTGTATCGTGCCATCGATTCTACAGGTTTGACATTAGATATTTGGTTTCGAAAGAATCGGGATA
AACAGGCGGCCTATGCTTTCTTTAAACGATTAATCAAGCAATTTGGAGAACCTAGAGTTTTTGTAACGGACAAAGCTCCTTCGCTAAGCAGTGCGTTCAA
TCGACTTAAATCTGAAGGTTTATTTTCTAACACTGAACATCGAACGAGTAAATATTTGAATAATATCATTGAACAAGATCATAGGCCTATCAAGAAAAGG
CACAAATTATATCAGTCCATAAGGACTGCCTCATCCACAATCAAAGGAATTGAAACTATACATGCTTTATACAAAACTAGCCAAAGAGACTTTTCTCTCT
TTGGCTTTTCAGTGATTCATGAAATAAATAATCTAATGGGTGTTCCAGCTTAAAATTAGAAAATAGTTGAGATATCATTTTACTTCTTTGAACTTTGCAA
CAGAACC
AACAGGATATCATCATGGTAGCCGTGGGCTACTACTTAAGATACAATTTGAGCTATCGTGATGTTTCAGAAATCCTTAATGAGCGTGGAATCAAGGTTTG
TCACACAACTGTTTATCGATGGGTACAAGAATATGGTTCGATTATTTATTGCCTATGGAAGAAAAGAAATAAGTCTGCTAGCGATTCTTGGAGAATGGAT
GAAACATATATTAAAGTAAAAGGAAAATGGCATTATTTGTATCGTGCCATCGATTCTACAGGTTTGACATTAGATATTTGGTTTCGAAAGAATCGGGATA
AACAGGCGGCCTATGCTTTCTTTAAACGATTAATCAAGCAATTTGGAGAACCTAGAGTTTTTGTAACGGACAAAGCTCCTTCGCTAAGCAGTGCGTTCAA
TCGACTTAAATCTGAAGGTTTATTTTCTAACACTGAACATCGAACGAGTAAATATTTGAATAATATCATTGAACAAGATCATAGGCCTATCAAGAAAAGG
CACAAATTATATCAGTCCATAAGGACTGCCTCATCCACAATCAAAGGAATTGAAACTATACATGCTTTATACAAAACTAGCCAAAGAGACTTTTCTCTCT
TTGGCTTTTCAGTGATTCATGAAATAAATAATCTAATGGGTGTTCCAGCTTAAAATTAGAAAATAGTTGAGATATCATTTTACTTCTTTGAACTTTGCAA
CAGAACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
681 bp | 226 aa | 73 | 753 | + | No |
Chemistry : DDE
ORF sequence :
MSHFKGKRFKQDIIMVAVGYYLRYNLSYRDVSEILNERGIKVCHTTVYRWVQEYGSIIYCLWKKRNKSASDSWRMDETYIKVKGKWHYLYRAIDSTGLTL
DIWFRKNRDKQAAYAFFKRLIKQFGEPRVFVTDKAPSLSSAFNRLKSEGLFSNTEHRTSKYLNNIIEQDHRPIKKRHKLYQSIRTASSTIKGIETIHALY
KTSQRDFSLFGFSVIHEINNLMGVPA
DIWFRKNRDKQAAYAFFKRLIKQFGEPRVFVTDKAPSLSSAFNRLKSEGLFSNTEHRTSKYLNNIIEQDHRPIKKRHKLYQSIRTASSTIKGIETIHALY
KTSQRDFSLFGFSVIHEINNLMGVPA
Blast result :
Comments
ISLmo3 is 87% aa similar to ISTeha2.
ISLmo3 was identified by in silico nucleotide sequence analysis of Listeria monocytogenes strain CFSAN004330 plasmid pCFSAN004330. Isoforms of ISLmo3 are present in plasmids of L. monocytogenes, L. innocua, L. grayi and L. welshimeri strains.
ISLmo3 was identified by in silico nucleotide sequence analysis of Listeria monocytogenes strain CFSAN004330 plasmid pCFSAN004330. Isoforms of ISLmo3 are present in plasmids of L. monocytogenes, L. innocua, L. grayi and L. welshimeri strains.
References
1] Chmielowska, C. and Bartosik, D.(2018) Direct submission .