ISLmo3

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP022021.1 ND Listeria monocytogenes
Listeria monocytogenes
Listeria monocytogenes CFSAN004330
Listeria welshimeri 40/07
DNA section
IS Length : 807 bp

Ends


IR Length : 17/17

IRL : GGTTCTGTTGCAAAGTTTTATTTAACTGATTATTTAGTGTAGAATGGAAG
IRR : GGTTCTGTTGCAAAGTTCAAAGAAGTAAAATGATATCTCAACTATTTTCT

Insertion site


Left flankDirect repeatRight flankDR Length
ATAAAAGATAATTTATATCA0

DNA sequence

GGTTCTGTTGCAAAGTTTTATTTAACTGATTATTTAGTGTAGAATGGAAGAAACTACACGAGGAGAATAACAATGTCCCATTTTAAAGGTAAACGATTCA
AACAGGATATCATCATGGTAGCCGTGGGCTACTACTTAAGATACAATTTGAGCTATCGTGATGTTTCAGAAATCCTTAATGAGCGTGGAATCAAGGTTTG
TCACACAACTGTTTATCGATGGGTACAAGAATATGGTTCGATTATTTATTGCCTATGGAAGAAAAGAAATAAGTCTGCTAGCGATTCTTGGAGAATGGAT
GAAACATATATTAAAGTAAAAGGAAAATGGCATTATTTGTATCGTGCCATCGATTCTACAGGTTTGACATTAGATATTTGGTTTCGAAAGAATCGGGATA
AACAGGCGGCCTATGCTTTCTTTAAACGATTAATCAAGCAATTTGGAGAACCTAGAGTTTTTGTAACGGACAAAGCTCCTTCGCTAAGCAGTGCGTTCAA
TCGACTTAAATCTGAAGGTTTATTTTCTAACACTGAACATCGAACGAGTAAATATTTGAATAATATCATTGAACAAGATCATAGGCCTATCAAGAAAAGG
CACAAATTATATCAGTCCATAAGGACTGCCTCATCCACAATCAAAGGAATTGAAACTATACATGCTTTATACAAAACTAGCCAAAGAGACTTTTCTCTCT
TTGGCTTTTCAGTGATTCATGAAATAAATAATCTAATGGGTGTTCCAGCTTAAAATTAGAAAATAGTTGAGATATCATTTTACTTCTTTGAACTTTGCAA
CAGAACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
681 bp226 aa73753+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSHFKGKRFKQDIIMVAVGYYLRYNLSYRDVSEILNERGIKVCHTTVYRWVQEYGSIIYCLWKKRNKSASDSWRMDETYIKVKGKWHYLYRAIDSTGLTL
DIWFRKNRDKQAAYAFFKRLIKQFGEPRVFVTDKAPSLSSAFNRLKSEGLFSNTEHRTSKYLNNIIEQDHRPIKKRHKLYQSIRTASSTIKGIETIHALY
KTSQRDFSLFGFSVIHEINNLMGVPA

 

Blast result :
Comments
ISLmo3 is 87% aa similar to ISTeha2.
ISLmo3 was identified by in silico nucleotide sequence analysis of Listeria monocytogenes strain CFSAN004330 plasmid pCFSAN004330. Isoforms of ISLmo3 are present in plasmids of L. monocytogenes, L. innocua, L. grayi and L. welshimeri strains.
References
1] Chmielowska, C. and Bartosik, D.(2018) Direct submission .