ISPa90

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
MF344571 Y Pseudomonas aeruginosa
Pseudomonas aeruginosa
Pseudomonas aeruginosa R31014
DNA section
IS Length : 1677 bp

Ends


IR Length : 19/20

IRL : CAGACTGTGTAAAAACGCAGGCACCAATCTTGATATGATTTGACCAGACT
IRR : CAGAGTGTGTAAAAACGCAGCGGAGAAGTGTTGACCGGTAGAGCGGCCAC

Insertion site


Left flankDirect repeatRight flankDR Length
GGCAGAAACCGGCCAGAAGCAGTC4

DNA sequence

CAGACTGTGTAAAAACGCAGGCACCAATCTTGATATGATTTGACCAGACTTCATCTCAGCAGGAGATGCCTGTGCGGCGATTCATTCAAGGTGAAAATCG
GACTCAAGTTACCTTGCTCCCAGAGAGTTTGGACGACTACGTGTCGGACACTAATCCGGTGCGGGTAGTCGATGTATTCGTCTCTGAGCTCGACCTAGGC
AAGCTGGGTTTTGACGGTGTCGTACCGGCGGAAACAGGTCGGCCCGCCTACCATCCTGCTGACCTGCTCAAAATTTATATCTACGGTTACCTCAACCGCA
TCCAATCCAGCCGTCGCCTTGAGCGAGAAGCTCAACGGAACGTCGAGCTCATGTGGCTGACTGGACGCTTGATGCCGGACTTCAAAACCATCGCCAATTT
TCGAAAAGACAACGGCAAAGCTATCCGCGCTGTTTGTCGTCAATTTGTGGTGCTGTGCCAGCAGGTTGGCTTGTTCTCTGAAGCTCTCGTTGCAATCGAC
GGAAGCAAATTTAAGGCGGTCAATAACCGGGATCGCAACTTCACTAGCGCCAAGCTCCAGCGGCGCATGGAAGAAATTGAATCGAGTATCAATAAGTACC
TGAGCGCACTCGATACCGCAGATCGTCAGGAGCCTGTCGTTTCGCAACTGAAGGCCGAGCGACTGCACGGCAAGATAGCTGCGTTGAAAATGAAGATGCA
AGAGCTCAAGGAAATCGAGGTACGACTTAATGAGACGCCGGATAAACAGATATCGCTGACCGATCCTGATGCTCGCTCGATGAAGACCCGAGGCACGGGC
ATCGTGGGCTATAACGTGCAAACAGCGGTAGATACAAAGCACCATTTAATCGTGGCTCATGAAGTGACCAACGACGGCAGTGACCGAAGCCAACTAAGTC
CAATGGCCAAGCTGGCGAAACAGGCCATGGGGGCAGAAAAACTATCGGTGGTGGCCGATCGTGGCTACTTCAAAAGCGAAGAAATATTGGCCTGTCAGCA
GTCGAATATAACCGTACACGTGCCAAGGCCTATGACCTCAGGGGCCAAGGCAGATGGGCGATATGACAAAGCTACTTTTATTTACGACACCGAAACCGAC
GAGTACAAATGCCCAGCAGGGCAGCGCTTGATTTGGCGGTACGCCAGTATTGAAAAGGGGCTGAAACTCCACACTTATTGGAGTTCACATTGCCAGAGCT
GCGAGCTGAAAGCGCAATGCACGCCCAGCACGCAGCGACGCGTAAGGCGGTGGGAGCATGAAAGCGTGCTGGAAAGTATGCAGCATCGCCTGGATCAGGC
CCCCGAGATGATGCGTATCCGTAAACAGACCGTTGAGCACCCCTTTGGAACGCTCAAAGCCTGGATGGGCGCTACCCATTTTCTGACCAGAACCTTGCCT
AGGGTCAGCACTGAAATGAGCTTGCATGTGCTCGCCTACAACATGAAGCGGGTGATCAAGATAATGGGTAGCGCAGCGCTGATGGAGGCAATAGCTGCCT
AAGGCAAAATGCCTTTTCGGCTCGCCTGGCGCCCGTACAGCCCGTTTCTTGTAGTTATGCGACCAGGAAGCTTCAGAATCCCACGTATGGCGTAGAAGGC
CAGTGACCAGCTTTCTAGCGTATCTCGGTGGCCGCTCTACCGGTCAACACTTCTCCGCTGCGTTTTTACACACTCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1431 bp476 aa721502+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRRFIQGENRTQVTLLPESLDDYVSDTNPVRVVDVFVSELDLGKLGFDGVVPAETGRPAYHPADLLKIYIYGYLNRIQSSRRLEREAQRNVELMWLTGRL
MPDFKTIANFRKDNGKAIRAVCRQFVVLCQQVGLFSEALVAIDGSKFKAVNNRDRNFTSAKLQRRMEEIESSINKYLSALDTADRQEPVVSQLKAERLHG
KIAALKMKMQELKEIEVRLNETPDKQISLTDPDARSMKTRGTGIVGYNVQTAVDTKHHLIVAHEVTNDGSDRSQLSPMAKLAKQAMGAEKLSVVADRGYF
KSEEILACQQSNITVHVPRPMTSGAKADGRYDKATFIYDTETDEYKCPAGQRLIWRYASIEKGLKLHTYWSSHCQSCELKAQCTPSTQRRVRRWEHESVL
ESMQHRLDQAPEMMRIRKQTVEHPFGTLKAWMGATHFLTRTLPRVSTEMSLHVLAYNMKRVIKIMGSAALMEAIAA

 

Blast result :
Comments
ISPa90 is 91% aa similar to ISPa7.
References
1] Dongsheng Zhou (2018) Direct submission.