ISPa90
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
MF344571 | Y | Pseudomonas aeruginosa | Pseudomonas aeruginosa Pseudomonas aeruginosa R31014 |
DNA section
IS Length : 1677 bp
Ends
IR Length : 19/20
IRL : CAGACTGTGTAAAAACGCAGGCACCAATCTTGATATGATTTGACCAGACT
IRR : CAGAGTGTGTAAAAACGCAGCGGAGAAGTGTTGACCGGTAGAGCGGCCAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGCAGAAACC | GGCC | AGAAGCAGTC | 4 |
DNA sequence
CAGACTGTGTAAAAACGCAGGCACCAATCTTGATATGATTTGACCAGACTTCATCTCAGCAGGAGATGCCTGTGCGGCGATTCATTCAAGGTGAAAATCG
GACTCAAGTTACCTTGCTCCCAGAGAGTTTGGACGACTACGTGTCGGACACTAATCCGGTGCGGGTAGTCGATGTATTCGTCTCTGAGCTCGACCTAGGC
AAGCTGGGTTTTGACGGTGTCGTACCGGCGGAAACAGGTCGGCCCGCCTACCATCCTGCTGACCTGCTCAAAATTTATATCTACGGTTACCTCAACCGCA
TCCAATCCAGCCGTCGCCTTGAGCGAGAAGCTCAACGGAACGTCGAGCTCATGTGGCTGACTGGACGCTTGATGCCGGACTTCAAAACCATCGCCAATTT
TCGAAAAGACAACGGCAAAGCTATCCGCGCTGTTTGTCGTCAATTTGTGGTGCTGTGCCAGCAGGTTGGCTTGTTCTCTGAAGCTCTCGTTGCAATCGAC
GGAAGCAAATTTAAGGCGGTCAATAACCGGGATCGCAACTTCACTAGCGCCAAGCTCCAGCGGCGCATGGAAGAAATTGAATCGAGTATCAATAAGTACC
TGAGCGCACTCGATACCGCAGATCGTCAGGAGCCTGTCGTTTCGCAACTGAAGGCCGAGCGACTGCACGGCAAGATAGCTGCGTTGAAAATGAAGATGCA
AGAGCTCAAGGAAATCGAGGTACGACTTAATGAGACGCCGGATAAACAGATATCGCTGACCGATCCTGATGCTCGCTCGATGAAGACCCGAGGCACGGGC
ATCGTGGGCTATAACGTGCAAACAGCGGTAGATACAAAGCACCATTTAATCGTGGCTCATGAAGTGACCAACGACGGCAGTGACCGAAGCCAACTAAGTC
CAATGGCCAAGCTGGCGAAACAGGCCATGGGGGCAGAAAAACTATCGGTGGTGGCCGATCGTGGCTACTTCAAAAGCGAAGAAATATTGGCCTGTCAGCA
GTCGAATATAACCGTACACGTGCCAAGGCCTATGACCTCAGGGGCCAAGGCAGATGGGCGATATGACAAAGCTACTTTTATTTACGACACCGAAACCGAC
GAGTACAAATGCCCAGCAGGGCAGCGCTTGATTTGGCGGTACGCCAGTATTGAAAAGGGGCTGAAACTCCACACTTATTGGAGTTCACATTGCCAGAGCT
GCGAGCTGAAAGCGCAATGCACGCCCAGCACGCAGCGACGCGTAAGGCGGTGGGAGCATGAAAGCGTGCTGGAAAGTATGCAGCATCGCCTGGATCAGGC
CCCCGAGATGATGCGTATCCGTAAACAGACCGTTGAGCACCCCTTTGGAACGCTCAAAGCCTGGATGGGCGCTACCCATTTTCTGACCAGAACCTTGCCT
AGGGTCAGCACTGAAATGAGCTTGCATGTGCTCGCCTACAACATGAAGCGGGTGATCAAGATAATGGGTAGCGCAGCGCTGATGGAGGCAATAGCTGCCT
AAGGCAAAATGCCTTTTCGGCTCGCCTGGCGCCCGTACAGCCCGTTTCTTGTAGTTATGCGACCAGGAAGCTTCAGAATCCCACGTATGGCGTAGAAGGC
CAGTGACCAGCTTTCTAGCGTATCTCGGTGGCCGCTCTACCGGTCAACACTTCTCCGCTGCGTTTTTACACACTCTG
GACTCAAGTTACCTTGCTCCCAGAGAGTTTGGACGACTACGTGTCGGACACTAATCCGGTGCGGGTAGTCGATGTATTCGTCTCTGAGCTCGACCTAGGC
AAGCTGGGTTTTGACGGTGTCGTACCGGCGGAAACAGGTCGGCCCGCCTACCATCCTGCTGACCTGCTCAAAATTTATATCTACGGTTACCTCAACCGCA
TCCAATCCAGCCGTCGCCTTGAGCGAGAAGCTCAACGGAACGTCGAGCTCATGTGGCTGACTGGACGCTTGATGCCGGACTTCAAAACCATCGCCAATTT
TCGAAAAGACAACGGCAAAGCTATCCGCGCTGTTTGTCGTCAATTTGTGGTGCTGTGCCAGCAGGTTGGCTTGTTCTCTGAAGCTCTCGTTGCAATCGAC
GGAAGCAAATTTAAGGCGGTCAATAACCGGGATCGCAACTTCACTAGCGCCAAGCTCCAGCGGCGCATGGAAGAAATTGAATCGAGTATCAATAAGTACC
TGAGCGCACTCGATACCGCAGATCGTCAGGAGCCTGTCGTTTCGCAACTGAAGGCCGAGCGACTGCACGGCAAGATAGCTGCGTTGAAAATGAAGATGCA
AGAGCTCAAGGAAATCGAGGTACGACTTAATGAGACGCCGGATAAACAGATATCGCTGACCGATCCTGATGCTCGCTCGATGAAGACCCGAGGCACGGGC
ATCGTGGGCTATAACGTGCAAACAGCGGTAGATACAAAGCACCATTTAATCGTGGCTCATGAAGTGACCAACGACGGCAGTGACCGAAGCCAACTAAGTC
CAATGGCCAAGCTGGCGAAACAGGCCATGGGGGCAGAAAAACTATCGGTGGTGGCCGATCGTGGCTACTTCAAAAGCGAAGAAATATTGGCCTGTCAGCA
GTCGAATATAACCGTACACGTGCCAAGGCCTATGACCTCAGGGGCCAAGGCAGATGGGCGATATGACAAAGCTACTTTTATTTACGACACCGAAACCGAC
GAGTACAAATGCCCAGCAGGGCAGCGCTTGATTTGGCGGTACGCCAGTATTGAAAAGGGGCTGAAACTCCACACTTATTGGAGTTCACATTGCCAGAGCT
GCGAGCTGAAAGCGCAATGCACGCCCAGCACGCAGCGACGCGTAAGGCGGTGGGAGCATGAAAGCGTGCTGGAAAGTATGCAGCATCGCCTGGATCAGGC
CCCCGAGATGATGCGTATCCGTAAACAGACCGTTGAGCACCCCTTTGGAACGCTCAAAGCCTGGATGGGCGCTACCCATTTTCTGACCAGAACCTTGCCT
AGGGTCAGCACTGAAATGAGCTTGCATGTGCTCGCCTACAACATGAAGCGGGTGATCAAGATAATGGGTAGCGCAGCGCTGATGGAGGCAATAGCTGCCT
AAGGCAAAATGCCTTTTCGGCTCGCCTGGCGCCCGTACAGCCCGTTTCTTGTAGTTATGCGACCAGGAAGCTTCAGAATCCCACGTATGGCGTAGAAGGC
CAGTGACCAGCTTTCTAGCGTATCTCGGTGGCCGCTCTACCGGTCAACACTTCTCCGCTGCGTTTTTACACACTCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1431 bp | 476 aa | 72 | 1502 | + | No |
Chemistry : DDE
ORF sequence :
MRRFIQGENRTQVTLLPESLDDYVSDTNPVRVVDVFVSELDLGKLGFDGVVPAETGRPAYHPADLLKIYIYGYLNRIQSSRRLEREAQRNVELMWLTGRL
MPDFKTIANFRKDNGKAIRAVCRQFVVLCQQVGLFSEALVAIDGSKFKAVNNRDRNFTSAKLQRRMEEIESSINKYLSALDTADRQEPVVSQLKAERLHG
KIAALKMKMQELKEIEVRLNETPDKQISLTDPDARSMKTRGTGIVGYNVQTAVDTKHHLIVAHEVTNDGSDRSQLSPMAKLAKQAMGAEKLSVVADRGYF
KSEEILACQQSNITVHVPRPMTSGAKADGRYDKATFIYDTETDEYKCPAGQRLIWRYASIEKGLKLHTYWSSHCQSCELKAQCTPSTQRRVRRWEHESVL
ESMQHRLDQAPEMMRIRKQTVEHPFGTLKAWMGATHFLTRTLPRVSTEMSLHVLAYNMKRVIKIMGSAALMEAIAA
MPDFKTIANFRKDNGKAIRAVCRQFVVLCQQVGLFSEALVAIDGSKFKAVNNRDRNFTSAKLQRRMEEIESSINKYLSALDTADRQEPVVSQLKAERLHG
KIAALKMKMQELKEIEVRLNETPDKQISLTDPDARSMKTRGTGIVGYNVQTAVDTKHHLIVAHEVTNDGSDRSQLSPMAKLAKQAMGAEKLSVVADRGYF
KSEEILACQQSNITVHVPRPMTSGAKADGRYDKATFIYDTETDEYKCPAGQRLIWRYASIEKGLKLHTYWSSHCQSCELKAQCTPSTQRRVRRWEHESVL
ESMQHRLDQAPEMMRIRKQTVEHPFGTLKAWMGATHFLTRTLPRVSTEMSLHVLAYNMKRVIKIMGSAALMEAIAA
Blast result :
Comments
ISPa90 is 91% aa similar to ISPa7.
References
1] Dongsheng Zhou (2018) Direct submission.