ISPa87

  • Family IS21
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
MF344568 ND Pseudomonas aeruginosa
Pseudomonas aeruginosa
Pseudomonas aeruginosa 727
Pseudomonas putida strain DLL-E4
DNA section
IS Length : 2643 bp

Ends


IR Length : 39/48

IRL : TGGGGATTCCACGCGCACTTGGACACCCATTCCACGAACACTTGGACAGT
IRR : TGCGGATTCCACGACACTTGGACACCCAGCCCGCGCTCATTTGGACACTC

Insertion site


Left flankDirect repeatRight flankDR Length
AGCCAGAATGGCCATGCGCACCTCAGAG8

DNA sequence

TGGGGATTCCACGCGCACTTGGACACCCATTCCACGAACACTTGGACAGTGATTCCACGCTGACTTGGACACCCATTCCACGGTCACTTGGACACTGATT
CCACGAGCACTTGGACAGTGAGCGCTCACTGATCAGTCCCAAGCTCAGGCAGGCAGCAACGCAGGACTATTCACTACCATCGACCTCTTTTTCGAAGCGA
AGAGGTCGTCGTGGAGCGTTTATCCATGCGTAAAATCCGAGAGGTACTACGCCTAAAGTTCGACGCCGGCCTGTCCGTGCGCAAGATCGCCGCAAGCCTG
CAAATCAGTAGCGGCAGTGCTGGCAATTACCTGCACCGGTTCAACGCCTGCGGGCTGACTTGGCCAACGTCATTGTCGGATGCCGAGCTAGAACGGCTTC
TGTTCCCACCGGCCCCAACAGTACCCAGCGATCAACGCCCGATACCAGACTGGGCATGGGTGCACACCGAACTACGCCGCCCCGGCGTAACCCTGGCCCT
GCTCTGGCAGGAGTACCGGCTCAGCCACCCGCAAGGCTTCCAATACAGCTGGTTCTGCGAGCACTACCGCTTGTGGGCCGCCAAGGTCGACGTGGCCATG
CGCCAGGAGCACCGCGCCGGCGAGAAGCTGTTCGTCGATTACGCGGGCCAAACCGTACCGGTCATCGACCGGCAGACCGGTGAAATCCGCCAGGCCCAGG
TTTTCGTCGCTGTTCTCGGAGCATCCAGTTACACCTTCGCCGAAGCCACCTGGTCACAAACGCTGCCTGACTGGCTGGGCTCGCACGCGCGCTGCTTAGC
GTTTCTCGGAGCGGCCCCGCAGATCCTGGTGCCCGACAACTTGCGCAGCGGCGTCAGCAAGGCGCATCGCTACGAGCCCGACATCAACCCCAGCTACCGC
GACCTGGCCGAGCATTACGGCATCGCCGTCGTGCCTGCCCGTGCGCGTAAGCCCAAGGACAAAGCCAAGGTCGAGGTCGGCGTCCAGGTGGTTGAACGCT
GGATCCTCGCGGCATTGCGCAACCGCCAGTTCTTCTCGCTGGGCGAACTCAACACCGCTATCGCACTGCTGCTGGATCGGCTCAACCACAAGCCCTTCAA
AAAGCTGCCCGGCTCACGCCGGTCGGCCTTCGAAGCCATCGACCAACCTGCGTTGCAGGCCTTACCGGAACAGCCCTACGTCTACGCTGAATGGAAAAAG
GTACGCGTCCACATCGACTACCACGTCGAAGTGGACGGCCACTTCTACTCGGTGCCGTACCAACTGGTGAAGCACCAGCTCGAAGTGCGCCTGACCGCCC
AGACCGTCGAGTGCTTCCACGCGAACCAGCGTGTGGCCAGCCACCGCCGCTCGCCGCACAAAGGCCGCCACACCACGCAAACCGAGCACATGCCCAAGAG
CCATCGCGAGCATGCCGAATGGACACCGCAGCGACTGATCCGCTGGGCCGAGCAGACAGGGCCCAACACCGCTGGCGTCATCGCCTACATCCTCGAACGC
CGAATCCACCCGCAGCATGGCTTCCGCGCATGCCTGGGCATCCTGCGCTTGAGCAAACAGCACGGCGAAGCGCGGCTGGAGGCCGCTTGCCAGCGTGCGC
TGGCACTGGGCGCGTGCAGCTACAAAAGCCTTGAATCGATCCTGCGCCAAGGGCTGGAACGGCTGCCGCTGGCCCAGCAAAACCTGCCCCTGCTGCCCGA
CGAACACACCAACCTGCGCGGCCCCGGCTACTACCACTGACCTGCAAAAGGAACCTTGAAATGCTACCGAACCCCACCCTGGACAAGCTGCAAACCCTGC
GCCTGCACGGCATGATCAAAGCCCTGAGCGAGCAACAGGCGACGCCTGACATCAACGACCTGAGCTTCGACGAACGCCTCGGCCTGATGGTCGACCGCGA
GCTGACCGAGCGTGAAAACACACGCCTCACGACCCGCCTCAAGGCTGCTCGGCTGCGCCACAACGCCTGCCTGGAGGACATCGACTACCGCAGCCCTCGT
GGGCTGGACAAGTCGCTGATCCTGCAACTGGGCAGCGGCCAATGGCTGCGCGATGGCCTGAACCTGATCATCGGCGGCCCCACCGGCGTGGGCAAAACCT
GGCTTGCCTGCGCCCTGGCCCACAAGGCCTGCCGCGATGGTTACAGCGTGCGCTACCTACGCCTGCCACGCCTGATGGAAGAGCTGGGCTTAGCCCACGG
TGATGGGCGCTTCGCCAAACTGATGACGGGGTATGCCAAGACGGACTTGCTGATCCTGGACGACTGGGGCCTGGCGCCGTTTACCGCAGCGCAACGGCGC
GACATGCTCGAGCTGCTGGACGACCGCTACGGCAGCCGCTCGACGTTGGTGACCAGCCAGATGCCGGTGGACAAATGGCATGCACTGATCGGCGATCCGA
CCCTGGGCGATGCAATCCTCGACCGGCTGGTGCACAACGCTTATCGGATCGAACTGAAGGGTGAATCGATGCGTAAACGCACGACGAAATTGACGGTGGC
AGGGGCTTCAGACTAACAATGCAACCCTGCGTCGCTGCGCTCCGACTGCCTGTCCAAGTGGACGTGGATCAGGTGTCCAAGTGCGCGTGGAACGAGTGTC
CAAATGAGCGCGGGCTGGGTGTCCAAGTGTCGTGGAATCCGCA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1515 bp504 aa2261740+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRKIREVLRLKFDAGLSVRKIAASLQISSGSAGNYLHRFNACGLTWPTSLSDAELERLLFPPAPTVPSDQRPIPDWAWVHTELRRPGVTLALLWQEYRLS
HPQGFQYSWFCEHYRLWAAKVDVAMRQEHRAGEKLFVDYAGQTVPVIDRQTGEIRQAQVFVAVLGASSYTFAEATWSQTLPDWLGSHARCLAFLGAAPQI
LVPDNLRSGVSKAHRYEPDINPSYRDLAEHYGIAVVPARARKPKDKAKVEVGVQVVERWILAALRNRQFFSLGELNTAIALLLDRLNHKPFKKLPGSRRS
AFEAIDQPALQALPEQPYVYAEWKKVRVHIDYHVEVDGHFYSVPYQLVKHQLEVRLTAQTVECFHANQRVASHRRSPHKGRHTTQTEHMPKSHREHAEWT
PQRLIRWAEQTGPNTAGVIAYILERRIHPQHGFRACLGILRLSKQHGEARLEAACQRALALGACSYKSLESILRQGLERLPLAQQNLPLLPDEHTNLRGP
GYYH

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
756 bp251 aa17612516+No
ORF function : Accessory Gene
AG : IS21 helper

ORF sequence :

MLPNPTLDKLQTLRLHGMIKALGEQHATPDINDLSFDERLGLMVDRELTEREDARMTTRLKAARLRHNACLEDIDYRSPRGLDKALILQLGSGQWLRDGL
NLIIGGPTGVGKTWLACALAHKACRDGYSVRYLRLPRLMEELGLAHGDGRFAKLMAGYAKTDLLILDDWGLAPFTAAQRRDMLELLDDRYGNRSTLVTSQ
MPVDKWHALIGDPTLGDAILDRLVHNAYRIELKGESMRRRATKLTSAGASD

 

Blast result :
Comments
ISPa87 is 96% aa similar to ISPsy40.
References
1] Dongsheng Zhou (2018) Direct submission.