ISPa87
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
MF344568 | ND | Pseudomonas aeruginosa | Pseudomonas aeruginosa Pseudomonas aeruginosa 727 Pseudomonas putida strain DLL-E4 |
DNA section
IS Length : 2643 bp
Ends
IR Length : 39/48
IRL : TGGGGATTCCACGCGCACTTGGACACCCATTCCACGAACACTTGGACAGT
IRR : TGCGGATTCCACGACACTTGGACACCCAGCCCGCGCTCATTTGGACACTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGCCAGAATG | GCCATGCG | CACCTCAGAG | 8 |
DNA sequence
TGGGGATTCCACGCGCACTTGGACACCCATTCCACGAACACTTGGACAGTGATTCCACGCTGACTTGGACACCCATTCCACGGTCACTTGGACACTGATT
CCACGAGCACTTGGACAGTGAGCGCTCACTGATCAGTCCCAAGCTCAGGCAGGCAGCAACGCAGGACTATTCACTACCATCGACCTCTTTTTCGAAGCGA
AGAGGTCGTCGTGGAGCGTTTATCCATGCGTAAAATCCGAGAGGTACTACGCCTAAAGTTCGACGCCGGCCTGTCCGTGCGCAAGATCGCCGCAAGCCTG
CAAATCAGTAGCGGCAGTGCTGGCAATTACCTGCACCGGTTCAACGCCTGCGGGCTGACTTGGCCAACGTCATTGTCGGATGCCGAGCTAGAACGGCTTC
TGTTCCCACCGGCCCCAACAGTACCCAGCGATCAACGCCCGATACCAGACTGGGCATGGGTGCACACCGAACTACGCCGCCCCGGCGTAACCCTGGCCCT
GCTCTGGCAGGAGTACCGGCTCAGCCACCCGCAAGGCTTCCAATACAGCTGGTTCTGCGAGCACTACCGCTTGTGGGCCGCCAAGGTCGACGTGGCCATG
CGCCAGGAGCACCGCGCCGGCGAGAAGCTGTTCGTCGATTACGCGGGCCAAACCGTACCGGTCATCGACCGGCAGACCGGTGAAATCCGCCAGGCCCAGG
TTTTCGTCGCTGTTCTCGGAGCATCCAGTTACACCTTCGCCGAAGCCACCTGGTCACAAACGCTGCCTGACTGGCTGGGCTCGCACGCGCGCTGCTTAGC
GTTTCTCGGAGCGGCCCCGCAGATCCTGGTGCCCGACAACTTGCGCAGCGGCGTCAGCAAGGCGCATCGCTACGAGCCCGACATCAACCCCAGCTACCGC
GACCTGGCCGAGCATTACGGCATCGCCGTCGTGCCTGCCCGTGCGCGTAAGCCCAAGGACAAAGCCAAGGTCGAGGTCGGCGTCCAGGTGGTTGAACGCT
GGATCCTCGCGGCATTGCGCAACCGCCAGTTCTTCTCGCTGGGCGAACTCAACACCGCTATCGCACTGCTGCTGGATCGGCTCAACCACAAGCCCTTCAA
AAAGCTGCCCGGCTCACGCCGGTCGGCCTTCGAAGCCATCGACCAACCTGCGTTGCAGGCCTTACCGGAACAGCCCTACGTCTACGCTGAATGGAAAAAG
GTACGCGTCCACATCGACTACCACGTCGAAGTGGACGGCCACTTCTACTCGGTGCCGTACCAACTGGTGAAGCACCAGCTCGAAGTGCGCCTGACCGCCC
AGACCGTCGAGTGCTTCCACGCGAACCAGCGTGTGGCCAGCCACCGCCGCTCGCCGCACAAAGGCCGCCACACCACGCAAACCGAGCACATGCCCAAGAG
CCATCGCGAGCATGCCGAATGGACACCGCAGCGACTGATCCGCTGGGCCGAGCAGACAGGGCCCAACACCGCTGGCGTCATCGCCTACATCCTCGAACGC
CGAATCCACCCGCAGCATGGCTTCCGCGCATGCCTGGGCATCCTGCGCTTGAGCAAACAGCACGGCGAAGCGCGGCTGGAGGCCGCTTGCCAGCGTGCGC
TGGCACTGGGCGCGTGCAGCTACAAAAGCCTTGAATCGATCCTGCGCCAAGGGCTGGAACGGCTGCCGCTGGCCCAGCAAAACCTGCCCCTGCTGCCCGA
CGAACACACCAACCTGCGCGGCCCCGGCTACTACCACTGACCTGCAAAAGGAACCTTGAAATGCTACCGAACCCCACCCTGGACAAGCTGCAAACCCTGC
GCCTGCACGGCATGATCAAAGCCCTGAGCGAGCAACAGGCGACGCCTGACATCAACGACCTGAGCTTCGACGAACGCCTCGGCCTGATGGTCGACCGCGA
GCTGACCGAGCGTGAAAACACACGCCTCACGACCCGCCTCAAGGCTGCTCGGCTGCGCCACAACGCCTGCCTGGAGGACATCGACTACCGCAGCCCTCGT
GGGCTGGACAAGTCGCTGATCCTGCAACTGGGCAGCGGCCAATGGCTGCGCGATGGCCTGAACCTGATCATCGGCGGCCCCACCGGCGTGGGCAAAACCT
GGCTTGCCTGCGCCCTGGCCCACAAGGCCTGCCGCGATGGTTACAGCGTGCGCTACCTACGCCTGCCACGCCTGATGGAAGAGCTGGGCTTAGCCCACGG
TGATGGGCGCTTCGCCAAACTGATGACGGGGTATGCCAAGACGGACTTGCTGATCCTGGACGACTGGGGCCTGGCGCCGTTTACCGCAGCGCAACGGCGC
GACATGCTCGAGCTGCTGGACGACCGCTACGGCAGCCGCTCGACGTTGGTGACCAGCCAGATGCCGGTGGACAAATGGCATGCACTGATCGGCGATCCGA
CCCTGGGCGATGCAATCCTCGACCGGCTGGTGCACAACGCTTATCGGATCGAACTGAAGGGTGAATCGATGCGTAAACGCACGACGAAATTGACGGTGGC
AGGGGCTTCAGACTAACAATGCAACCCTGCGTCGCTGCGCTCCGACTGCCTGTCCAAGTGGACGTGGATCAGGTGTCCAAGTGCGCGTGGAACGAGTGTC
CAAATGAGCGCGGGCTGGGTGTCCAAGTGTCGTGGAATCCGCA
CCACGAGCACTTGGACAGTGAGCGCTCACTGATCAGTCCCAAGCTCAGGCAGGCAGCAACGCAGGACTATTCACTACCATCGACCTCTTTTTCGAAGCGA
AGAGGTCGTCGTGGAGCGTTTATCCATGCGTAAAATCCGAGAGGTACTACGCCTAAAGTTCGACGCCGGCCTGTCCGTGCGCAAGATCGCCGCAAGCCTG
CAAATCAGTAGCGGCAGTGCTGGCAATTACCTGCACCGGTTCAACGCCTGCGGGCTGACTTGGCCAACGTCATTGTCGGATGCCGAGCTAGAACGGCTTC
TGTTCCCACCGGCCCCAACAGTACCCAGCGATCAACGCCCGATACCAGACTGGGCATGGGTGCACACCGAACTACGCCGCCCCGGCGTAACCCTGGCCCT
GCTCTGGCAGGAGTACCGGCTCAGCCACCCGCAAGGCTTCCAATACAGCTGGTTCTGCGAGCACTACCGCTTGTGGGCCGCCAAGGTCGACGTGGCCATG
CGCCAGGAGCACCGCGCCGGCGAGAAGCTGTTCGTCGATTACGCGGGCCAAACCGTACCGGTCATCGACCGGCAGACCGGTGAAATCCGCCAGGCCCAGG
TTTTCGTCGCTGTTCTCGGAGCATCCAGTTACACCTTCGCCGAAGCCACCTGGTCACAAACGCTGCCTGACTGGCTGGGCTCGCACGCGCGCTGCTTAGC
GTTTCTCGGAGCGGCCCCGCAGATCCTGGTGCCCGACAACTTGCGCAGCGGCGTCAGCAAGGCGCATCGCTACGAGCCCGACATCAACCCCAGCTACCGC
GACCTGGCCGAGCATTACGGCATCGCCGTCGTGCCTGCCCGTGCGCGTAAGCCCAAGGACAAAGCCAAGGTCGAGGTCGGCGTCCAGGTGGTTGAACGCT
GGATCCTCGCGGCATTGCGCAACCGCCAGTTCTTCTCGCTGGGCGAACTCAACACCGCTATCGCACTGCTGCTGGATCGGCTCAACCACAAGCCCTTCAA
AAAGCTGCCCGGCTCACGCCGGTCGGCCTTCGAAGCCATCGACCAACCTGCGTTGCAGGCCTTACCGGAACAGCCCTACGTCTACGCTGAATGGAAAAAG
GTACGCGTCCACATCGACTACCACGTCGAAGTGGACGGCCACTTCTACTCGGTGCCGTACCAACTGGTGAAGCACCAGCTCGAAGTGCGCCTGACCGCCC
AGACCGTCGAGTGCTTCCACGCGAACCAGCGTGTGGCCAGCCACCGCCGCTCGCCGCACAAAGGCCGCCACACCACGCAAACCGAGCACATGCCCAAGAG
CCATCGCGAGCATGCCGAATGGACACCGCAGCGACTGATCCGCTGGGCCGAGCAGACAGGGCCCAACACCGCTGGCGTCATCGCCTACATCCTCGAACGC
CGAATCCACCCGCAGCATGGCTTCCGCGCATGCCTGGGCATCCTGCGCTTGAGCAAACAGCACGGCGAAGCGCGGCTGGAGGCCGCTTGCCAGCGTGCGC
TGGCACTGGGCGCGTGCAGCTACAAAAGCCTTGAATCGATCCTGCGCCAAGGGCTGGAACGGCTGCCGCTGGCCCAGCAAAACCTGCCCCTGCTGCCCGA
CGAACACACCAACCTGCGCGGCCCCGGCTACTACCACTGACCTGCAAAAGGAACCTTGAAATGCTACCGAACCCCACCCTGGACAAGCTGCAAACCCTGC
GCCTGCACGGCATGATCAAAGCCCTGAGCGAGCAACAGGCGACGCCTGACATCAACGACCTGAGCTTCGACGAACGCCTCGGCCTGATGGTCGACCGCGA
GCTGACCGAGCGTGAAAACACACGCCTCACGACCCGCCTCAAGGCTGCTCGGCTGCGCCACAACGCCTGCCTGGAGGACATCGACTACCGCAGCCCTCGT
GGGCTGGACAAGTCGCTGATCCTGCAACTGGGCAGCGGCCAATGGCTGCGCGATGGCCTGAACCTGATCATCGGCGGCCCCACCGGCGTGGGCAAAACCT
GGCTTGCCTGCGCCCTGGCCCACAAGGCCTGCCGCGATGGTTACAGCGTGCGCTACCTACGCCTGCCACGCCTGATGGAAGAGCTGGGCTTAGCCCACGG
TGATGGGCGCTTCGCCAAACTGATGACGGGGTATGCCAAGACGGACTTGCTGATCCTGGACGACTGGGGCCTGGCGCCGTTTACCGCAGCGCAACGGCGC
GACATGCTCGAGCTGCTGGACGACCGCTACGGCAGCCGCTCGACGTTGGTGACCAGCCAGATGCCGGTGGACAAATGGCATGCACTGATCGGCGATCCGA
CCCTGGGCGATGCAATCCTCGACCGGCTGGTGCACAACGCTTATCGGATCGAACTGAAGGGTGAATCGATGCGTAAACGCACGACGAAATTGACGGTGGC
AGGGGCTTCAGACTAACAATGCAACCCTGCGTCGCTGCGCTCCGACTGCCTGTCCAAGTGGACGTGGATCAGGTGTCCAAGTGCGCGTGGAACGAGTGTC
CAAATGAGCGCGGGCTGGGTGTCCAAGTGTCGTGGAATCCGCA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1515 bp | 504 aa | 226 | 1740 | + | No |
Chemistry : DDE
ORF sequence :
MRKIREVLRLKFDAGLSVRKIAASLQISSGSAGNYLHRFNACGLTWPTSLSDAELERLLFPPAPTVPSDQRPIPDWAWVHTELRRPGVTLALLWQEYRLS
HPQGFQYSWFCEHYRLWAAKVDVAMRQEHRAGEKLFVDYAGQTVPVIDRQTGEIRQAQVFVAVLGASSYTFAEATWSQTLPDWLGSHARCLAFLGAAPQI
LVPDNLRSGVSKAHRYEPDINPSYRDLAEHYGIAVVPARARKPKDKAKVEVGVQVVERWILAALRNRQFFSLGELNTAIALLLDRLNHKPFKKLPGSRRS
AFEAIDQPALQALPEQPYVYAEWKKVRVHIDYHVEVDGHFYSVPYQLVKHQLEVRLTAQTVECFHANQRVASHRRSPHKGRHTTQTEHMPKSHREHAEWT
PQRLIRWAEQTGPNTAGVIAYILERRIHPQHGFRACLGILRLSKQHGEARLEAACQRALALGACSYKSLESILRQGLERLPLAQQNLPLLPDEHTNLRGP
GYYH
HPQGFQYSWFCEHYRLWAAKVDVAMRQEHRAGEKLFVDYAGQTVPVIDRQTGEIRQAQVFVAVLGASSYTFAEATWSQTLPDWLGSHARCLAFLGAAPQI
LVPDNLRSGVSKAHRYEPDINPSYRDLAEHYGIAVVPARARKPKDKAKVEVGVQVVERWILAALRNRQFFSLGELNTAIALLLDRLNHKPFKKLPGSRRS
AFEAIDQPALQALPEQPYVYAEWKKVRVHIDYHVEVDGHFYSVPYQLVKHQLEVRLTAQTVECFHANQRVASHRRSPHKGRHTTQTEHMPKSHREHAEWT
PQRLIRWAEQTGPNTAGVIAYILERRIHPQHGFRACLGILRLSKQHGEARLEAACQRALALGACSYKSLESILRQGLERLPLAQQNLPLLPDEHTNLRGP
GYYH
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
756 bp | 251 aa | 1761 | 2516 | + | No |
AG : IS21 helper
ORF sequence :
MLPNPTLDKLQTLRLHGMIKALGEQHATPDINDLSFDERLGLMVDRELTEREDARMTTRLKAARLRHNACLEDIDYRSPRGLDKALILQLGSGQWLRDGL
NLIIGGPTGVGKTWLACALAHKACRDGYSVRYLRLPRLMEELGLAHGDGRFAKLMAGYAKTDLLILDDWGLAPFTAAQRRDMLELLDDRYGNRSTLVTSQ
MPVDKWHALIGDPTLGDAILDRLVHNAYRIELKGESMRRRATKLTSAGASD
NLIIGGPTGVGKTWLACALAHKACRDGYSVRYLRLPRLMEELGLAHGDGRFAKLMAGYAKTDLLILDDWGLAPFTAAQRRDMLELLDDRYGNRSTLVTSQ
MPVDKWHALIGDPTLGDAILDRLVHNAYRIELKGESMRRRATKLTSAGASD
Blast result :
Comments
ISPa87 is 96% aa similar to ISPsy40.
References
1] Dongsheng Zhou (2018) Direct submission.