ISHahy11

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP002304.1 ND Halanaerobium hydrogeniformans
Halanaerobium hydrogeniformans
DNA section
IS Length : 1220 bp

Ends


IR Length : 20/26

IRL : GGTTCATTGTAAAATTAAATGCAACAGACAAAAAAATTAGAACCATAGCT
IRR : CTTAAATTGCAATATTAAATGCAACACTAATAGAAAAACCTAGTATAACG

Insertion site


Left flankDirect repeatRight flankDR Length
AAAATTGACATCGAACATT0

DNA sequence

GGTTCATTGTAAAATTAAATGCAACAGACAAAAAAATTAGAACCATAGCTAAAAACCTAGTATGATATAAGTGACCAAACAAAATCATATGGAGGTTTAA
GCTATGGCTCATACTAAAGATAATACCACAACTCAAAGAACTTTTAAACATCTTTCTTCTTACGAAAGAGGCAAAATTGCTGCTTTTTTGCAAGAAGGAT
ATTCTCAAAGAAAGATTGCTGAAAAATTAGGAAGATCTCCCAGTACTATTAATCGTGAAATTAAAAAAGGCACCACAACTCAACTAAACTATGATCTGTC
TACCTATGAGCAGTATTTCCCTGAAACTGGTCAGGCTGTTTATGAGAAAAATCGTTCTCACTGCGGTAATAAACATAAATTACTTAAAGTAGAAACATTT
CTAAATTATGCAGAAAAGATGATTTTAGAAAATAGTTGGTCTCCAGATGTTGTTGTTGGCCATGCTCTGAAAAATAATAAATTTACTAAAGATAAAATGG
TATCTGCTAAAACTTTGTATAATTATATAGACCAAAATCTACTAGATGTTAAAAATATTGATCTTCAGCTTAAAGTTCGTAGAAAAAAAAGAGTTCCTAA
TAAAAGAAAGCATAAAAGACTTAAGGGTAAAAGTATTGAAGAAAGACCAGAAACAGTTGATGACCGAAAAGAATTTGGCCACTGGGAAATTGATACTGTT
AGAGGCACTAGAGCCAAAGACAATGTTCTTTTGACAATTACCGAAAGAACTACTCGTCAACATTTGATTAGAGTTTTAGAAGATAAGAGCTCTGCTGCTG
TAGATCAAGCAATTAAAAAGCTAAAAGTTCAATATTCTAATGTTTTTAATAAGCTATTTAAAACAATTACGGCTGATAATGGAACTGAATTTACTAATTT
ACATAATCACGATATTAATGTTTACTATGCTCATCCCTATTCAGCTTGGGAAAGAGGCACTAATGAAAGACACAATGGTCTCATTAGACGATTCATTCCT
AAAGGAGAACAAATAAGTAAATATACAGAAAAACAAATTCAAAGAATACAAAATTGGTGTAATAATTATCCAAGAAAATTATTGAATTATTTTACTCCAA
ATGAATTATTCCAAAAAGAACTTCAATCTATTATCAGCGATGTATAAATAGTTTTAAATATAATATACTTCGTTATACTAGGTTTTTCTATTAGTGTTGC
ATTTAATATTGCAATTTAAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1044 bp347 aa1041147+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAHTKDNTTTQRTFKHLSSYERGKIAAFLQEGYSQRKIAEKLGRSPSTINREIKKGTTTQLNYDLSTYEQYFPETGQAVYEKNRSHCGNKHKLLKVETFL
NYAEKMILENSWSPDVVVGHALKNNKFTKDKMVSAKTLYNYIDQNLLDVKNIDLQLKVRRKKRVPNKRKHKRLKGKSIEERPETVDDRKEFGHWEIDTVR
GTRAKDNVLLTITERTTRQHLIRVLEDKSSAAVDQAIKKLKVQYSNVFNKLFKTITADNGTEFTNLHNHDINVYYAHPYSAWERGTNERHNGLIRRFIPK
GEQISKYTEKQIQRIQNWCNNYPRKLLNYFTPNELFQKELQSIISDV

 

Blast result :
Comments
ISHahy11 is 96% aa similar to ISHahy10.
References
1] Bassett K. (2018) Direct Submission.
2] Brown S.D., Begemann M.B., Mormile M.R., Wall J.D., Han C.S., Goodwin L.A., Pitluck S., Land M.L., Hauser L.J. and Elias D.A. (2011) J. Bacteriol. 193, 3682-3683