ISHahy11
- Family IS30
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP002304.1 | ND | Halanaerobium hydrogeniformans | Halanaerobium hydrogeniformans |
DNA section
IS Length : 1220 bp
Ends
IR Length : 20/26
IRL : GGTTCATTGTAAAATTAAATGCAACAGACAAAAAAATTAGAACCATAGCT
IRR : CTTAAATTGCAATATTAAATGCAACACTAATAGAAAAACCTAGTATAACG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAAATTGAC | ATCGAACATT | 0 |
DNA sequence
GGTTCATTGTAAAATTAAATGCAACAGACAAAAAAATTAGAACCATAGCTAAAAACCTAGTATGATATAAGTGACCAAACAAAATCATATGGAGGTTTAA
GCTATGGCTCATACTAAAGATAATACCACAACTCAAAGAACTTTTAAACATCTTTCTTCTTACGAAAGAGGCAAAATTGCTGCTTTTTTGCAAGAAGGAT
ATTCTCAAAGAAAGATTGCTGAAAAATTAGGAAGATCTCCCAGTACTATTAATCGTGAAATTAAAAAAGGCACCACAACTCAACTAAACTATGATCTGTC
TACCTATGAGCAGTATTTCCCTGAAACTGGTCAGGCTGTTTATGAGAAAAATCGTTCTCACTGCGGTAATAAACATAAATTACTTAAAGTAGAAACATTT
CTAAATTATGCAGAAAAGATGATTTTAGAAAATAGTTGGTCTCCAGATGTTGTTGTTGGCCATGCTCTGAAAAATAATAAATTTACTAAAGATAAAATGG
TATCTGCTAAAACTTTGTATAATTATATAGACCAAAATCTACTAGATGTTAAAAATATTGATCTTCAGCTTAAAGTTCGTAGAAAAAAAAGAGTTCCTAA
TAAAAGAAAGCATAAAAGACTTAAGGGTAAAAGTATTGAAGAAAGACCAGAAACAGTTGATGACCGAAAAGAATTTGGCCACTGGGAAATTGATACTGTT
AGAGGCACTAGAGCCAAAGACAATGTTCTTTTGACAATTACCGAAAGAACTACTCGTCAACATTTGATTAGAGTTTTAGAAGATAAGAGCTCTGCTGCTG
TAGATCAAGCAATTAAAAAGCTAAAAGTTCAATATTCTAATGTTTTTAATAAGCTATTTAAAACAATTACGGCTGATAATGGAACTGAATTTACTAATTT
ACATAATCACGATATTAATGTTTACTATGCTCATCCCTATTCAGCTTGGGAAAGAGGCACTAATGAAAGACACAATGGTCTCATTAGACGATTCATTCCT
AAAGGAGAACAAATAAGTAAATATACAGAAAAACAAATTCAAAGAATACAAAATTGGTGTAATAATTATCCAAGAAAATTATTGAATTATTTTACTCCAA
ATGAATTATTCCAAAAAGAACTTCAATCTATTATCAGCGATGTATAAATAGTTTTAAATATAATATACTTCGTTATACTAGGTTTTTCTATTAGTGTTGC
ATTTAATATTGCAATTTAAG
GCTATGGCTCATACTAAAGATAATACCACAACTCAAAGAACTTTTAAACATCTTTCTTCTTACGAAAGAGGCAAAATTGCTGCTTTTTTGCAAGAAGGAT
ATTCTCAAAGAAAGATTGCTGAAAAATTAGGAAGATCTCCCAGTACTATTAATCGTGAAATTAAAAAAGGCACCACAACTCAACTAAACTATGATCTGTC
TACCTATGAGCAGTATTTCCCTGAAACTGGTCAGGCTGTTTATGAGAAAAATCGTTCTCACTGCGGTAATAAACATAAATTACTTAAAGTAGAAACATTT
CTAAATTATGCAGAAAAGATGATTTTAGAAAATAGTTGGTCTCCAGATGTTGTTGTTGGCCATGCTCTGAAAAATAATAAATTTACTAAAGATAAAATGG
TATCTGCTAAAACTTTGTATAATTATATAGACCAAAATCTACTAGATGTTAAAAATATTGATCTTCAGCTTAAAGTTCGTAGAAAAAAAAGAGTTCCTAA
TAAAAGAAAGCATAAAAGACTTAAGGGTAAAAGTATTGAAGAAAGACCAGAAACAGTTGATGACCGAAAAGAATTTGGCCACTGGGAAATTGATACTGTT
AGAGGCACTAGAGCCAAAGACAATGTTCTTTTGACAATTACCGAAAGAACTACTCGTCAACATTTGATTAGAGTTTTAGAAGATAAGAGCTCTGCTGCTG
TAGATCAAGCAATTAAAAAGCTAAAAGTTCAATATTCTAATGTTTTTAATAAGCTATTTAAAACAATTACGGCTGATAATGGAACTGAATTTACTAATTT
ACATAATCACGATATTAATGTTTACTATGCTCATCCCTATTCAGCTTGGGAAAGAGGCACTAATGAAAGACACAATGGTCTCATTAGACGATTCATTCCT
AAAGGAGAACAAATAAGTAAATATACAGAAAAACAAATTCAAAGAATACAAAATTGGTGTAATAATTATCCAAGAAAATTATTGAATTATTTTACTCCAA
ATGAATTATTCCAAAAAGAACTTCAATCTATTATCAGCGATGTATAAATAGTTTTAAATATAATATACTTCGTTATACTAGGTTTTTCTATTAGTGTTGC
ATTTAATATTGCAATTTAAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1044 bp | 347 aa | 104 | 1147 | + | No |
Chemistry : DDE
ORF sequence :
MAHTKDNTTTQRTFKHLSSYERGKIAAFLQEGYSQRKIAEKLGRSPSTINREIKKGTTTQLNYDLSTYEQYFPETGQAVYEKNRSHCGNKHKLLKVETFL
NYAEKMILENSWSPDVVVGHALKNNKFTKDKMVSAKTLYNYIDQNLLDVKNIDLQLKVRRKKRVPNKRKHKRLKGKSIEERPETVDDRKEFGHWEIDTVR
GTRAKDNVLLTITERTTRQHLIRVLEDKSSAAVDQAIKKLKVQYSNVFNKLFKTITADNGTEFTNLHNHDINVYYAHPYSAWERGTNERHNGLIRRFIPK
GEQISKYTEKQIQRIQNWCNNYPRKLLNYFTPNELFQKELQSIISDV
NYAEKMILENSWSPDVVVGHALKNNKFTKDKMVSAKTLYNYIDQNLLDVKNIDLQLKVRRKKRVPNKRKHKRLKGKSIEERPETVDDRKEFGHWEIDTVR
GTRAKDNVLLTITERTTRQHLIRVLEDKSSAAVDQAIKKLKVQYSNVFNKLFKTITADNGTEFTNLHNHDINVYYAHPYSAWERGTNERHNGLIRRFIPK
GEQISKYTEKQIQRIQNWCNNYPRKLLNYFTPNELFQKELQSIISDV
Blast result :
Comments
ISHahy11 is 96% aa similar to ISHahy10.
References
1] Bassett K. (2018) Direct Submission.
2] Brown S.D., Begemann M.B., Mormile M.R., Wall J.D., Han C.S., Goodwin L.A., Pitluck S., Land M.L., Hauser L.J. and Elias D.A. (2011) J. Bacteriol. 193, 3682-3683
2] Brown S.D., Begemann M.B., Mormile M.R., Wall J.D., Han C.S., Goodwin L.A., Pitluck S., Land M.L., Hauser L.J. and Elias D.A. (2011) J. Bacteriol. 193, 3682-3683