ISC1041

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
U85710 ND Sulfolobus solfataricus
Sulfolobus solfataricus MT-4
DNA section
IS Length : 1038 bp

Ends


IR Length : 16/18

IRL : AAAACTTGAAGTGCGACATAAACCACCTAATTAATTTAAAGGGTTTATGG
IRR : AAAACATGAGGTGCGACAGTTTGAAAAGTCTTATGATAACAACAAGCTGA

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

AAAACTTGAAGTGCGACATAAACCACCTAATTAATTTAAAGGGTTTATGGAGTATATAAAAGTTTTCATACCATCATCTTAACTTTGAAGATCGATGCTC
ATTAATGCTTGAGTCAAGAAAAGAAGGCTTTTCAGCCAGAAAATTTGCTGAACTCATTAAAAGACATCCTAGTACCGTAATCTATCGTGAGCTTAAAAGA
AATAGCATCAATGACGTTTATCTTGCTCGATATGCTTCTGATAACACCTTCGCTAGACTAGACTGTGGCACAGAAAACTCAAAATCGATTCAATCCTCTG
GAAATTTATTGTTGTTAAAGGCGATCCCGTGGTTTATGGGCCTCTCAGGAAATACGGAAACTTTATTAACATCGAGAGTACATGTGACCAAAGAATGGGA
GCCGTTGAAAAAAGACTTATTATCCTGTCTGCGTCATGTAAAAAAGGCGGTAAAACGTAACTGGAAGAACCTAAAAAAGATTCTATATTACAGGATTAAT
AACTATTTCAGATGCGATGGACCCAGCCGAAGTTCAAGAAAGAAAAATACCGGACATTGGGAACGTGATTTAATTAAATGGAAAGACAATAAAAGTTCGA
TACGAACATTTATTGACCTTAAGATACACGGCTCTGTATCTTCGGAACATTACCTGATGGCAAAAGGCAGAATACGTGGAAGGGGTTTAACTGAAGCTCT
GAAATATTTACCTGCAGAACGTGCTAAAACGTTGACCTATGACCGTGGACGCGAGATGGCAGAACATAAAATACTTGAAGAAGATTTAGGCATAGATGTA
TATTTCTGTGACCCACATTCACCCTGGCAAAAAGGCACATGCGAAAATATGAATGGTTTAATTAGGCAATATTTACCTAAAGGGATTGATTTAAATCAGG
CAGATCAGCATTATTTAAATCAAGTTGCCATGTCACTGAATACTCGTCCTAGAAAAGCGTTAGTTGGCTTCACCATTGAGAAATTTGCTCAGCTTGTTGT
TATCATAAGACTTTTCAAACTGTCGCACCTCATGTTTT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
938 bp311 aa2401177+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLESRKEGFSARKFAELIKRHPSTVIYRELKRNSINDVYLARYASDNTFARLDCGTENSKSIQSSGNLLLLKAIPWFMGLSGNTETLLTSRVHVTKEWEP
LKKDLLSCLRHVKKAVKRNWKNLKKILYYRINNYFRCDGPSRSSRKKNTGHWERDLIKWKDNKSSIRTFIDLKIHGSVSSEHYLMAKGRIRGRGLTEALK
YLPAERAKTLTYDRGREMAEHKILEEDLGIDVYFCDPHSPWQKGTCENMNGLIRQYLPKGIDLNQADQHYLNQVAMSLNTRPRKALVGFTIEKFAQLVVI
IRLFKLSHLMF

 

Blast result :
Comments
ISC1041 IRs do not ressemble those of others IS30 family members.
References
1] Ammendola, S., Politi, L., and Scandurra R. (1998) FEBS Lett. 428, 217-223.