ISC1041
- Family IS30
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
U85710 | ND | Sulfolobus solfataricus | Sulfolobus solfataricus MT-4 |
DNA section
IS Length : 1038 bp
Ends
IR Length : 16/18
IRL : AAAACTTGAAGTGCGACATAAACCACCTAATTAATTTAAAGGGTTTATGG
IRR : AAAACATGAGGTGCGACAGTTTGAAAAGTCTTATGATAACAACAAGCTGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
AAAACTTGAAGTGCGACATAAACCACCTAATTAATTTAAAGGGTTTATGGAGTATATAAAAGTTTTCATACCATCATCTTAACTTTGAAGATCGATGCTC
ATTAATGCTTGAGTCAAGAAAAGAAGGCTTTTCAGCCAGAAAATTTGCTGAACTCATTAAAAGACATCCTAGTACCGTAATCTATCGTGAGCTTAAAAGA
AATAGCATCAATGACGTTTATCTTGCTCGATATGCTTCTGATAACACCTTCGCTAGACTAGACTGTGGCACAGAAAACTCAAAATCGATTCAATCCTCTG
GAAATTTATTGTTGTTAAAGGCGATCCCGTGGTTTATGGGCCTCTCAGGAAATACGGAAACTTTATTAACATCGAGAGTACATGTGACCAAAGAATGGGA
GCCGTTGAAAAAAGACTTATTATCCTGTCTGCGTCATGTAAAAAAGGCGGTAAAACGTAACTGGAAGAACCTAAAAAAGATTCTATATTACAGGATTAAT
AACTATTTCAGATGCGATGGACCCAGCCGAAGTTCAAGAAAGAAAAATACCGGACATTGGGAACGTGATTTAATTAAATGGAAAGACAATAAAAGTTCGA
TACGAACATTTATTGACCTTAAGATACACGGCTCTGTATCTTCGGAACATTACCTGATGGCAAAAGGCAGAATACGTGGAAGGGGTTTAACTGAAGCTCT
GAAATATTTACCTGCAGAACGTGCTAAAACGTTGACCTATGACCGTGGACGCGAGATGGCAGAACATAAAATACTTGAAGAAGATTTAGGCATAGATGTA
TATTTCTGTGACCCACATTCACCCTGGCAAAAAGGCACATGCGAAAATATGAATGGTTTAATTAGGCAATATTTACCTAAAGGGATTGATTTAAATCAGG
CAGATCAGCATTATTTAAATCAAGTTGCCATGTCACTGAATACTCGTCCTAGAAAAGCGTTAGTTGGCTTCACCATTGAGAAATTTGCTCAGCTTGTTGT
TATCATAAGACTTTTCAAACTGTCGCACCTCATGTTTT
ATTAATGCTTGAGTCAAGAAAAGAAGGCTTTTCAGCCAGAAAATTTGCTGAACTCATTAAAAGACATCCTAGTACCGTAATCTATCGTGAGCTTAAAAGA
AATAGCATCAATGACGTTTATCTTGCTCGATATGCTTCTGATAACACCTTCGCTAGACTAGACTGTGGCACAGAAAACTCAAAATCGATTCAATCCTCTG
GAAATTTATTGTTGTTAAAGGCGATCCCGTGGTTTATGGGCCTCTCAGGAAATACGGAAACTTTATTAACATCGAGAGTACATGTGACCAAAGAATGGGA
GCCGTTGAAAAAAGACTTATTATCCTGTCTGCGTCATGTAAAAAAGGCGGTAAAACGTAACTGGAAGAACCTAAAAAAGATTCTATATTACAGGATTAAT
AACTATTTCAGATGCGATGGACCCAGCCGAAGTTCAAGAAAGAAAAATACCGGACATTGGGAACGTGATTTAATTAAATGGAAAGACAATAAAAGTTCGA
TACGAACATTTATTGACCTTAAGATACACGGCTCTGTATCTTCGGAACATTACCTGATGGCAAAAGGCAGAATACGTGGAAGGGGTTTAACTGAAGCTCT
GAAATATTTACCTGCAGAACGTGCTAAAACGTTGACCTATGACCGTGGACGCGAGATGGCAGAACATAAAATACTTGAAGAAGATTTAGGCATAGATGTA
TATTTCTGTGACCCACATTCACCCTGGCAAAAAGGCACATGCGAAAATATGAATGGTTTAATTAGGCAATATTTACCTAAAGGGATTGATTTAAATCAGG
CAGATCAGCATTATTTAAATCAAGTTGCCATGTCACTGAATACTCGTCCTAGAAAAGCGTTAGTTGGCTTCACCATTGAGAAATTTGCTCAGCTTGTTGT
TATCATAAGACTTTTCAAACTGTCGCACCTCATGTTTT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
938 bp | 311 aa | 240 | 1177 | + | No |
Chemistry : DDE
ORF sequence :
MLESRKEGFSARKFAELIKRHPSTVIYRELKRNSINDVYLARYASDNTFARLDCGTENSKSIQSSGNLLLLKAIPWFMGLSGNTETLLTSRVHVTKEWEP
LKKDLLSCLRHVKKAVKRNWKNLKKILYYRINNYFRCDGPSRSSRKKNTGHWERDLIKWKDNKSSIRTFIDLKIHGSVSSEHYLMAKGRIRGRGLTEALK
YLPAERAKTLTYDRGREMAEHKILEEDLGIDVYFCDPHSPWQKGTCENMNGLIRQYLPKGIDLNQADQHYLNQVAMSLNTRPRKALVGFTIEKFAQLVVI
IRLFKLSHLMF
LKKDLLSCLRHVKKAVKRNWKNLKKILYYRINNYFRCDGPSRSSRKKNTGHWERDLIKWKDNKSSIRTFIDLKIHGSVSSEHYLMAKGRIRGRGLTEALK
YLPAERAKTLTYDRGREMAEHKILEEDLGIDVYFCDPHSPWQKGTCENMNGLIRQYLPKGIDLNQADQHYLNQVAMSLNTRPRKALVGFTIEKFAQLVVI
IRLFKLSHLMF
Blast result :
Comments
ISC1041 IRs do not ressemble those of others IS30 family members.
References
1] Ammendola, S., Politi, L., and Scandurra R. (1998) FEBS Lett. 428, 217-223.